Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:63087341-64297374

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
sevr 18 61139376 to 63741971 2602595 heritable phenotypic marker severe runting
Piezo2 18 63010213 to 63387183 376970 - protein coding gene piezo-type mechanosensitive ion channel component 2
Tssr153636 18 63087476 to 63087480 4 - TSS region transcription start site region 153636
Tssr151513 18 63150835 to 63150841 6 + TSS region transcription start site region 151513
Carcdq2 18 63290216 to 63290216 0 QTL cardiac collagen deposition QTL 2
Cpgi10130 18 63385984 to 63387396 1412 CpG island CpG island 10130
Tssr153637 18 63386495 to 63386507 12 - TSS region transcription start site region 153637
Tssr153638 18 63386511 to 63386526 15 - TSS region transcription start site region 153638
Tssr5350 18 63387045 to 63387054 9 - TSS region transcription start site region 5350
Tssr153639 18 63387124 to 63387189 65 - TSS region transcription start site region 153639
Gm26972 18 63399245 to 63402876 3631 + lincRNA gene predicted gene, 26972
Cpgi10131 18 63492004 to 63492350 346 CpG island CpG island 10131
Gm23581 18 63508169 to 63508231 62 + snRNA gene predicted gene, 23581
Gm22560 18 63509895 to 63510014 119 + rRNA gene predicted gene, 22560
Gm22210 18 63533068 to 63533211 143 + snoRNA gene predicted gene, 22210
Gm6789 18 63543434 to 63545204 1770 - pseudogene predicted gene 6789
Tssr153640 18 63545196 to 63545206 10 - TSS region transcription start site region 153640
Gm24848 18 63584736 to 63584842 106 + snRNA gene predicted gene, 24848
Txnl1 18 63662801 to 63692359 29558 - protein coding gene thioredoxin-like 1
Mcsq1 18 63670000 to 65295000 1625000 QTL methacholine sensitivity QTL 1, baseline
Tssr153641 18 63682254 to 63682265 11 - TSS region transcription start site region 153641
Tssr153642 18 63682273 to 63682312 39 - TSS region transcription start site region 153642
Cpgi10132 18 63691709 to 63692798 1089 CpG island CpG island 10132
Tssr153643 18 63692217 to 63692228 11 - TSS region transcription start site region 153643
Tssr153644 18 63692279 to 63692290 11 - TSS region transcription start site region 153644
Tssr153645 18 63692291 to 63692302 11 - TSS region transcription start site region 153645
Tssr153646 18 63692309 to 63692338 29 - TSS region transcription start site region 153646
Tssr153647 18 63692341 to 63692374 33 - TSS region transcription start site region 153647
Tssr153648 18 63692386 to 63692391 5 - TSS region transcription start site region 153648
Tssr153649 18 63692392 to 63692416 24 - TSS region transcription start site region 153649
Tssr153650 18 63692420 to 63692431 11 - TSS region transcription start site region 153650
Tssr5351 18 63692462 to 63692473 11 + TSS region transcription start site region 5351
Gm41754 18 63693887 to 63708563 14676 - lncRNA gene predicted gene, 41754
Tssr153651 18 63694872 to 63694879 7 - TSS region transcription start site region 153651
Gm41753 18 63700620 to 63704354 3734 + lncRNA gene predicted gene, 41753
Cpgi10133 18 63708451 to 63708893 442 CpG island CpG island 10133
Tssr153652 18 63708551 to 63708574 23 - TSS region transcription start site region 153652
Tssr151514 18 63708689 to 63708730 41 + TSS region transcription start site region 151514
Wdr7 18 63708695 to 63989760 281065 + protein coding gene WD repeat domain 7
Tssr151515 18 63708732 to 63708741 9 + TSS region transcription start site region 151515
D18Mit40 18 63741832 to 63741971 139 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 40
Ltpr8d 18 63741832 to 63741971 139 QTL Leishmania tropica response 8d
Ltpr8 18 63741832 to 76047170 12305338 QTL Leishmania tropica response 8
Ltpr8b 18 63741832 to 63741971 139 QTL Leishmania tropica response 8b
Tssr151516 18 63757798 to 63757809 11 + TSS region transcription start site region 151516
Gm19076 18 63898335 to 63899031 696 - pseudogene predicted gene, 19076
Gm24384 18 63909082 to 63909156 74 - snRNA gene predicted gene, 24384
D18Ertd169e 18 63910202 to 63910421 219 DNA segment DNA segment, Chr 18, ERATO Doi 169, expressed
Tssr151517 18 63926540 to 63926551 11 + TSS region transcription start site region 151517
Tssr151518 18 63981718 to 63981722 4 + TSS region transcription start site region 151518
Tssr151519 18 63988517 to 63988532 15 + TSS region transcription start site region 151519
Flal2 18 64000000 to 66000000 2000000 QTL fatty liver accumulation QTL 2, females only
Tssr151520 18 64075295 to 64075299 4 + TSS region transcription start site region 151520
Gm6974 18 64080765 to 64081420 655 - pseudogene predicted gene 6974
St8sia3os 18 64157724 to 64277180 119456 - antisense lncRNA gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3, opposite strand
Tssr151521 18 64190502 to 64190520 18 + TSS region transcription start site region 151521
Tssr153653 18 64191744 to 64191747 3 - TSS region transcription start site region 153653
Gm45934 18 64200104 to 64200551 447 - pseudogene predicted gene, 45934
Prdx1-ps 18 64219945 to 64220522 577 - pseudogene peroxiredoxin 1, pseudogene 1
St8sia3 18 64254359 to 64276144 21785 + protein coding gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3
Tssr151522 18 64254359 to 64254387 28 + TSS region transcription start site region 151522
Tssr151523 18 64264610 to 64264639 29 + TSS region transcription start site region 151523
Tssr151524 18 64264851 to 64264862 11 + TSS region transcription start site region 151524
Tssr151525 18 64264869 to 64264881 12 + TSS region transcription start site region 151525
Cpgi10134 18 64265037 to 64266664 1627 CpG island CpG island 10134
Tssr151526 18 64265038 to 64265067 29 + TSS region transcription start site region 151526
Tssr151527 18 64265072 to 64265087 15 + TSS region transcription start site region 151527
Tssr151528 18 64265153 to 64265181 28 + TSS region transcription start site region 151528
Tssr151529 18 64265190 to 64265203 13 + TSS region transcription start site region 151529
Tssr151530 18 64265207 to 64265222 15 + TSS region transcription start site region 151530
Tssr151531 18 64265225 to 64265234 9 + TSS region transcription start site region 151531
Tssr151532 18 64265342 to 64265365 23 + TSS region transcription start site region 151532
Tssr151533 18 64265367 to 64265413 46 + TSS region transcription start site region 151533
Tssr151534 18 64265418 to 64265430 12 + TSS region transcription start site region 151534
C630043D15Rik 18 64267737 to 64268332 595 unclassified gene RIKEN cDNA C630043D15 gene
Tssr153654 18 64277157 to 64277169 12 - TSS region transcription start site region 153654
Tssr153655 18 64277170 to 64277182 12 - TSS region transcription start site region 153655
Rps15-ps3 18 64286284 to 64288834 2550 + pseudogene ribosomal protein S15, pseudogene 3
Tssr151535 18 64288335 to 64288336 1 + TSS region transcription start site region 151535
Tssr151536 18 64289002 to 64289052 50 + TSS region transcription start site region 151536