Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:62880000-66085000

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420 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
sevr 18 61139376 to 63741971 2602595 heritable phenotypic marker severe runting
Cpgi10128 18 62921927 to 62923268 1341 CpG island CpG island 10128
Tssr151501 18 62922290 to 62922308 18 + TSS region transcription start site region 151501
Tssr151502 18 62922317 to 62922339 22 + TSS region transcription start site region 151502
Apcdd1 18 62922327 to 62953195 30868 + protein coding gene adenomatosis polyposis coli down-regulated 1
Tssr151503 18 62922422 to 62922458 36 + TSS region transcription start site region 151503
Tssr151504 18 62922481 to 62922494 13 + TSS region transcription start site region 151504
Tssr151505 18 62937209 to 62937220 11 + TSS region transcription start site region 151505
Tssr151506 18 62950071 to 62950074 3 + TSS region transcription start site region 151506
Tssr151507 18 62951211 to 62951212 1 + TSS region transcription start site region 151507
Cpgi10129 18 62977665 to 62978540 875 CpG island CpG island 10129
Tssr151508 18 62977826 to 62977839 13 + TSS region transcription start site region 151508
Napg 18 62977838 to 62999450 21612 + protein coding gene N-ethylmaleimide sensitive fusion protein attachment protein gamma
Tssr151509 18 62977854 to 62977931 77 + TSS region transcription start site region 151509
Tssr151510 18 62977934 to 62977952 18 + TSS region transcription start site region 151510
Tssr151511 18 62994875 to 62994886 11 + TSS region transcription start site region 151511
Tssr151512 18 62994889 to 62994923 34 + TSS region transcription start site region 151512
Piezo2 18 63010213 to 63387183 376970 - protein coding gene piezo-type mechanosensitive ion channel component 2
Gm36651 18 63050708 to 63068897 18189 + lncRNA gene predicted gene, 36651
Tssr153636 18 63087476 to 63087480 4 - TSS region transcription start site region 153636
Tssr151513 18 63150835 to 63150841 6 + TSS region transcription start site region 151513
Carcdq2 18 63290216 to 63290216 0 QTL cardiac collagen deposition QTL 2
Cpgi10130 18 63385984 to 63387396 1412 CpG island CpG island 10130
Tssr153637 18 63386495 to 63386507 12 - TSS region transcription start site region 153637
Tssr153638 18 63386511 to 63386526 15 - TSS region transcription start site region 153638
Tssr5350 18 63387045 to 63387054 9 - TSS region transcription start site region 5350
Tssr153639 18 63387124 to 63387189 65 - TSS region transcription start site region 153639
Gm26972 18 63399245 to 63402876 3631 + lincRNA gene predicted gene, 26972
Cpgi10131 18 63492004 to 63492350 346 CpG island CpG island 10131
Gm23581 18 63508169 to 63508231 62 + snRNA gene predicted gene, 23581
Gm22560 18 63509895 to 63510014 119 + rRNA gene predicted gene, 22560
Gm22210 18 63533068 to 63533211 143 + snoRNA gene predicted gene, 22210
Gm6789 18 63543434 to 63545204 1770 - pseudogene predicted gene 6789
Tssr153640 18 63545196 to 63545206 10 - TSS region transcription start site region 153640
Gm24848 18 63584736 to 63584842 106 + snRNA gene predicted gene, 24848
Txnl1 18 63662801 to 63692359 29558 - protein coding gene thioredoxin-like 1
Mcsq1 18 63670000 to 65295000 1625000 QTL methacholine sensitivity QTL 1, baseline
Tssr153641 18 63682254 to 63682265 11 - TSS region transcription start site region 153641
Tssr153642 18 63682273 to 63682312 39 - TSS region transcription start site region 153642
Cpgi10132 18 63691709 to 63692798 1089 CpG island CpG island 10132
Tssr153643 18 63692217 to 63692228 11 - TSS region transcription start site region 153643
Tssr153644 18 63692279 to 63692290 11 - TSS region transcription start site region 153644
Tssr153645 18 63692291 to 63692302 11 - TSS region transcription start site region 153645
Tssr153646 18 63692309 to 63692338 29 - TSS region transcription start site region 153646
Tssr153647 18 63692341 to 63692374 33 - TSS region transcription start site region 153647
Tssr153648 18 63692386 to 63692391 5 - TSS region transcription start site region 153648
Tssr153649 18 63692392 to 63692416 24 - TSS region transcription start site region 153649
Tssr153650 18 63692420 to 63692431 11 - TSS region transcription start site region 153650
Tssr5351 18 63692462 to 63692473 11 + TSS region transcription start site region 5351
Gm41754 18 63693887 to 63708563 14676 - lncRNA gene predicted gene, 41754
Tssr153651 18 63694872 to 63694879 7 - TSS region transcription start site region 153651
Gm41753 18 63700620 to 63704354 3734 + lncRNA gene predicted gene, 41753
Cpgi10133 18 63708451 to 63708893 442 CpG island CpG island 10133
Tssr153652 18 63708551 to 63708574 23 - TSS region transcription start site region 153652
Tssr151514 18 63708689 to 63708730 41 + TSS region transcription start site region 151514
Wdr7 18 63708695 to 63989760 281065 + protein coding gene WD repeat domain 7
Tssr151515 18 63708732 to 63708741 9 + TSS region transcription start site region 151515
Ltpr8b 18 63741832 to 63741971 139 QTL Leishmania tropica response 8b
D18Mit40 18 63741832 to 63741971 139 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 40
Ltpr8 18 63741832 to 76047170 12305338 QTL Leishmania tropica response 8
Ltpr8d 18 63741832 to 63741971 139 QTL Leishmania tropica response 8d
Tssr151516 18 63757798 to 63757809 11 + TSS region transcription start site region 151516
Gm19076 18 63898335 to 63899031 696 - pseudogene predicted gene, 19076
Gm24384 18 63909082 to 63909156 74 - snRNA gene predicted gene, 24384
D18Ertd169e 18 63910202 to 63910421 219 DNA segment DNA segment, Chr 18, ERATO Doi 169, expressed
Tssr151517 18 63926540 to 63926551 11 + TSS region transcription start site region 151517
Tssr151518 18 63981718 to 63981722 4 + TSS region transcription start site region 151518
Tssr151519 18 63988517 to 63988532 15 + TSS region transcription start site region 151519
Flal2 18 64000000 to 66000000 2000000 QTL fatty liver accumulation QTL 2, females only
Tssr151520 18 64075295 to 64075299 4 + TSS region transcription start site region 151520
Gm6974 18 64080765 to 64081420 655 - pseudogene predicted gene 6974
St8sia3os 18 64157724 to 64277180 119456 - antisense lncRNA gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3, opposite strand
Tssr151521 18 64190502 to 64190520 18 + TSS region transcription start site region 151521
Tssr153653 18 64191744 to 64191747 3 - TSS region transcription start site region 153653
Gm45934 18 64200104 to 64200551 447 - pseudogene predicted gene, 45934
Prdx1-ps 18 64219945 to 64220522 577 - pseudogene peroxiredoxin 1, pseudogene 1
St8sia3 18 64254359 to 64276144 21785 + protein coding gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3
Tssr151522 18 64254359 to 64254387 28 + TSS region transcription start site region 151522
Tssr151523 18 64264610 to 64264639 29 + TSS region transcription start site region 151523
Tssr151524 18 64264851 to 64264862 11 + TSS region transcription start site region 151524
Tssr151525 18 64264869 to 64264881 12 + TSS region transcription start site region 151525
Cpgi10134 18 64265037 to 64266664 1627 CpG island CpG island 10134
Tssr151526 18 64265038 to 64265067 29 + TSS region transcription start site region 151526
Tssr151527 18 64265072 to 64265087 15 + TSS region transcription start site region 151527
Tssr151528 18 64265153 to 64265181 28 + TSS region transcription start site region 151528
Tssr151529 18 64265190 to 64265203 13 + TSS region transcription start site region 151529
Tssr151530 18 64265207 to 64265222 15 + TSS region transcription start site region 151530
Tssr151531 18 64265225 to 64265234 9 + TSS region transcription start site region 151531
Tssr151532 18 64265342 to 64265365 23 + TSS region transcription start site region 151532
Tssr151533 18 64265367 to 64265413 46 + TSS region transcription start site region 151533
Tssr151534 18 64265418 to 64265430 12 + TSS region transcription start site region 151534
C630043D15Rik 18 64267737 to 64268332 595 unclassified gene RIKEN cDNA C630043D15 gene
Tssr153654 18 64277157 to 64277169 12 - TSS region transcription start site region 153654
Tssr153655 18 64277170 to 64277182 12 - TSS region transcription start site region 153655
Rps15-ps3 18 64286284 to 64288834 2550 + pseudogene ribosomal protein S15, pseudogene 3
Tssr151535 18 64288335 to 64288336 1 + TSS region transcription start site region 151535
Tssr151536 18 64289002 to 64289052 50 + TSS region transcription start site region 151536
Cpgi10135 18 64332121 to 64332416 295 CpG island CpG island 10135
Cpgi10136 18 64332614 to 64333625 1011 CpG island CpG island 10136
Tssr153656 18 64334844 to 64334848 4 - TSS region transcription start site region 153656
Cpgi10137 18 64339630 to 64341688 2058 CpG island CpG island 10137
Tssr153657 18 64339788 to 64339791 3 - TSS region transcription start site region 153657
Tssr151537 18 64340020 to 64340042 22 + TSS region transcription start site region 151537
Tssr151538 18 64340052 to 64340067 15 + TSS region transcription start site region 151538
Tssr151539 18 64340225 to 64340241 16 + TSS region transcription start site region 151539
Onecut2 18 64340364 to 64398488 58124 + protein coding gene one cut domain, family member 2
Tssr151540 18 64340569 to 64340586 17 + TSS region transcription start site region 151540
Tssr153658 18 64342342 to 64342379 37 - TSS region transcription start site region 153658
Cpgi10138 18 64342454 to 64343404 950 CpG island CpG island 10138
Cpgi10139 18 64345113 to 64345738 625 CpG island CpG island 10139
Tssr153659 18 64345806 to 64345819 13 - TSS region transcription start site region 153659
Cpgi10140 18 64345932 to 64346223 291 CpG island CpG island 10140
Tssr151541 18 64386589 to 64386605 16 + TSS region transcription start site region 151541
Tssr151542 18 64386648 to 64386659 11 + TSS region transcription start site region 151542
A330041D05Rik 18 64388502 to 64390265 1763 unclassified gene RIKEN cDNA A330041D05 gene
Gm36804 18 64428018 to 64428684 666 - pseudogene predicted gene, 36804
Cpgi10141 18 64428304 to 64428712 408 CpG island CpG island 10141
Amd-ps3 18 64448519 to 64450014 1495 - pseudogene S-adenosylmethionine decarboxylase, pseudogene 3
Fech 18 64456550 to 64489066 32516 - protein coding gene ferrochelatase
Tssr153660 18 64457292 to 64457309 17 - TSS region transcription start site region 153660
Tssr153661 18 64457876 to 64457886 10 - TSS region transcription start site region 153661
D18Mit206 18 64458775 to 64458894 119 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 206
Tssr153662 18 64476614 to 64476618 4 - TSS region transcription start site region 153662
Tssr153663 18 64479383 to 64479392 9 - TSS region transcription start site region 153663
Tssr153664 18 64479396 to 64479407 11 - TSS region transcription start site region 153664
Cpgi10142 18 64488590 to 64489525 935 CpG island CpG island 10142
Tssr153665 18 64488946 to 64488976 30 - TSS region transcription start site region 153665
Tssr153666 18 64488977 to 64488982 5 - TSS region transcription start site region 153666
Tssr153667 18 64489022 to 64489040 18 - TSS region transcription start site region 153667
Tssr153668 18 64489042 to 64489082 40 - TSS region transcription start site region 153668
Nars 18 64499665 to 64516557 16892 - protein coding gene asparaginyl-tRNA synthetase
Tssr153669 18 64504998 to 64505008 10 - TSS region transcription start site region 153669
Tssr151543 18 64511783 to 64511817 34 + TSS region transcription start site region 151543
Tssr153670 18 64516043 to 64516048 5 - TSS region transcription start site region 153670
Cpgi10143 18 64516124 to 64516785 661 CpG island CpG island 10143
Tssr153671 18 64516492 to 64516545 53 - TSS region transcription start site region 153671
Tssr153672 18 64516547 to 64516565 18 - TSS region transcription start site region 153672
Tssr151544 18 64519942 to 64519956 14 + TSS region transcription start site region 151544
Atp8b1 18 64528979 to 64661000 132021 - protein coding gene ATPase, class I, type 8B, member 1
Cpgi10144 18 64531274 to 64531654 380 CpG island CpG island 10144
Tssr151545 18 64554666 to 64554670 4 + TSS region transcription start site region 151545
Cpgi10145 18 64556793 to 64556946 153 CpG island CpG island 10145
Gm6978 18 64611610 to 64612459 849 - pseudogene predicted gene 6978
Cpgi10146 18 64659854 to 64661711 1857 CpG island CpG island 10146
Tssr153673 18 64660751 to 64660771 20 - TSS region transcription start site region 153673
Tssr153674 18 64660823 to 64660915 92 - TSS region transcription start site region 153674
Tssr153675 18 64660956 to 64660980 24 - TSS region transcription start site region 153675
Tssr153676 18 64660981 to 64661010 29 - TSS region transcription start site region 153676
Tssr153677 18 64661013 to 64661063 50 - TSS region transcription start site region 153677
Tssr153678 18 64661064 to 64661081 17 - TSS region transcription start site region 153678
Tssr151546 18 64661158 to 64661183 25 + TSS region transcription start site region 151546
Tssr153679 18 64692157 to 64692163 6 - TSS region transcription start site region 153679
Tssr151547 18 64700011 to 64700015 4 + TSS region transcription start site region 151547
Tssr153680 18 64700049 to 64700056 7 - TSS region transcription start site region 153680
Gm23016 18 64728066 to 64728127 61 + snRNA gene predicted gene, 23016
Gm24504 18 64786329 to 64786428 99 - snRNA gene predicted gene, 24504
Gm29860 18 64799964 to 64802926 2962 - lncRNA gene predicted gene, 29860
D18Mit183 18 64828175 to 64828259 84 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 183
Tssr151548 18 64852132 to 64852178 46 + TSS region transcription start site region 151548
Gm46639 18 64852138 to 64875198 23060 + lncRNA gene predicted gene, 46639
A330084C13Rik 18 64886726 to 64888491 1765 - antisense lncRNA gene RIKEN cDNA A330084C13 gene
Cpgi10147 18 64887142 to 64888656 1514 CpG island CpG island 10147
Tssr151549 18 64887690 to 64887762 72 + TSS region transcription start site region 151549
Nedd4l 18 64887705 to 65217831 330126 + protein coding gene neural precursor cell expressed, developmentally down-regulated gene 4-like
Tssr151550 18 64887771 to 64887795 24 + TSS region transcription start site region 151550
Tssr151551 18 64887814 to 64887829 15 + TSS region transcription start site region 151551
Tssr151552 18 64887839 to 64887853 14 + TSS region transcription start site region 151552
Tssr153681 18 64888731 to 64888752 21 - TSS region transcription start site region 153681
Tssr153682 18 64888776 to 64888783 7 - TSS region transcription start site region 153682
Tssr151553 18 64888856 to 64888869 13 + TSS region transcription start site region 151553
Tssr151554 18 64888903 to 64888921 18 + TSS region transcription start site region 151554
Cpgi10148 18 64888925 to 64889134 209 CpG island CpG island 10148
Tssr151555 18 64888960 to 64889035 75 + TSS region transcription start site region 151555
Tssr151556 18 64908670 to 64908683 13 + TSS region transcription start site region 151556
Tssr151557 18 64921105 to 64921146 41 + TSS region transcription start site region 151557
Tssr151558 18 64976862 to 64976875 13 + TSS region transcription start site region 151558
Tssr153683 18 64999372 to 64999380 8 - TSS region transcription start site region 153683
Tssr151559 18 65008024 to 65008043 19 + TSS region transcription start site region 151559
Tssr151560 18 65023700 to 65023713 13 + TSS region transcription start site region 151560
Tssr151561 18 65023715 to 65023721 6 + TSS region transcription start site region 151561
Tssr151562 18 65023730 to 65023736 6 + TSS region transcription start site region 151562
Tssr5352 18 65023741 to 65023744 3 + TSS region transcription start site region 5352
Tssr151563 18 65023811 to 65023852 41 + TSS region transcription start site region 151563
Tssr151564 18 65023862 to 65023903 41 + TSS region transcription start site region 151564
Tssr151565 18 65023909 to 65023916 7 + TSS region transcription start site region 151565
Tssr151566 18 65025908 to 65025957 49 + TSS region transcription start site region 151566
Tssr151567 18 65025983 to 65026004 21 + TSS region transcription start site region 151567
Tssr153684 18 65040693 to 65040710 17 - TSS region transcription start site region 153684
Tssr153685 18 65040730 to 65040741 11 - TSS region transcription start site region 153685
Gm41756 18 65046818 to 65050600 3782 - lncRNA gene predicted gene, 41756
Tssr151568 18 65050917 to 65050954 37 + TSS region transcription start site region 151568
Tssr151569 18 65050982 to 65050998 16 + TSS region transcription start site region 151569
Tssr151570 18 65051009 to 65051032 23 + TSS region transcription start site region 151570
Tssr151571 18 65072217 to 65072260 43 + TSS region transcription start site region 151571
Tssr151572 18 65072267 to 65072279 12 + TSS region transcription start site region 151572
Tssr151573 18 65072293 to 65072321 28 + TSS region transcription start site region 151573
Tssr151574 18 65076032 to 65076061 29 + TSS region transcription start site region 151574
Tssr151575 18 65076070 to 65076101 31 + TSS region transcription start site region 151575
Tssr151576 18 65077631 to 65077639 8 + TSS region transcription start site region 151576
Cpgi10149 18 65083523 to 65084284 761 CpG island CpG island 10149