Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:6248823-9488862

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149 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm41664 18 6240814 to 6268387 27573 + lncRNA gene predicted gene, 41664
Tssr149960 18 6332587 to 6332609 22 + TSS region transcription start site region 149960
Rpl27-ps3 18 6332632 to 6333042 410 + pseudogene ribosomal protein L27, pseudogene 3
Gm49986 18 6368360 to 6368797 437 + pseudogene predicted gene, 49986
Gm6291 18 6371352 to 6371660 308 - pseudogene predicted gene 6291
Epc1 18 6435951 to 6516108 80157 - protein coding gene enhancer of polycomb homolog 1
Cpgi9678 18 6489849 to 6491322 1473 CpG island CpG island 9678
Tssr149961 18 6490134 to 6490165 31 + TSS region transcription start site region 149961
Gm28529 18 6490143 to 6496962 6819 + antisense lncRNA gene predicted gene 28529
Mir1893 18 6490564 to 6490646 82 - miRNA gene microRNA 1893
Tssr152357 18 6490702 to 6490738 36 - TSS region transcription start site region 152357
Tssr152358 18 6490778 to 6490793 15 - TSS region transcription start site region 152358
Tssr152359 18 6490808 to 6490869 61 - TSS region transcription start site region 152359
Tssr152360 18 6490877 to 6490898 21 - TSS region transcription start site region 152360
Tssr152361 18 6490901 to 6490926 25 - TSS region transcription start site region 152361
Tssr152362 18 6510715 to 6510722 7 - TSS region transcription start site region 152362
Tssr152363 18 6515134 to 6515140 6 - TSS region transcription start site region 152363
Cpgi9679 18 6515978 to 6516607 629 CpG island CpG island 9679
Tssr152364 18 6516067 to 6516083 16 - TSS region transcription start site region 152364
Tssr152365 18 6516089 to 6516106 17 - TSS region transcription start site region 152365
Tssr149962 18 6516231 to 6516252 21 + TSS region transcription start site region 149962
Tssr149963 18 6516668 to 6516672 4 + TSS region transcription start site region 149963
Gm7464 18 6557130 to 6557796 666 + pseudogene predicted gene 7464
Tssr149964 18 6557152 to 6557158 6 + TSS region transcription start site region 149964
Tssr152366 18 6595474 to 6595479 5 - TSS region transcription start site region 152366
D18Mit220 18 6602571 to 6602646 75 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 220
Tssr149965 18 6603627 to 6603633 6 + TSS region transcription start site region 149965
4921524L21Rik 18 6603629 to 6638970 35341 + protein coding gene RIKEN cDNA 4921524L21 gene
Gm50077 18 6687843 to 6691317 3474 - pseudogene predicted gene, 50077
Tssr149966 18 6733733 to 6733749 16 + TSS region transcription start site region 149966
Tssr149967 18 6733779 to 6733788 9 + TSS region transcription start site region 149967
Tssr149968 18 6733893 to 6733898 5 + TSS region transcription start site region 149968
Tssr149969 18 6733953 to 6733960 7 + TSS region transcription start site region 149969
Gm7466 18 6760516 to 6760959 443 - pseudogene predicted gene 7466
Cpgi9680 18 6764811 to 6765629 818 CpG island CpG island 9680
Tssr149970 18 6765035 to 6765050 15 + TSS region transcription start site region 149970
Tssr149971 18 6765086 to 6765098 12 + TSS region transcription start site region 149971
Tssr149972 18 6765117 to 6765123 6 + TSS region transcription start site region 149972
Rab18 18 6765167 to 6791606 26439 + protein coding gene RAB18, member RAS oncogene family
Tssr149973 18 6765171 to 6765220 49 + TSS region transcription start site region 149973
Tssr149974 18 6765226 to 6765254 28 + TSS region transcription start site region 149974
Tssr149975 18 6765282 to 6765297 15 + TSS region transcription start site region 149975
Gm50081 18 6788768 to 6792137 3369 + sense overlapping lncRNA gene predicted gene, 50081
Tssr149976 18 6788906 to 6788911 5 + TSS region transcription start site region 149976
Gm2350 18 6910459 to 6936621 26162 - unclassified gene predicted gene 2350
Mkx 18 6934966 to 7004779 69813 - protein coding gene mohawk homeobox
Tssr152367 18 6983603 to 6983607 4 - TSS region transcription start site region 152367
Cpgi9681 18 7000569 to 7000748 179 CpG island CpG island 9681
Cpgi9682 18 7001452 to 7002715 1263 CpG island CpG island 9682
Cpgi9683 18 7003380 to 7005403 2023 CpG island CpG island 9683
Tssr152368 18 7004717 to 7004733 16 - TSS region transcription start site region 152368
Gm46633 18 7004963 to 7006405 1442 + lncRNA gene predicted gene, 46633
Gm10350 18 7043909 to 7044135 226 - pseudogene predicted gene 10350
Armc4 18 7088209 to 7297936 209727 - protein coding gene armadillo repeat containing 4
Gm18581 18 7107181 to 7108183 1002 - pseudogene predicted gene, 18581
D18Mit18 18 7116121 to 7116255 134 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 18
4930415O11Rik 18 7150343 to 7151776 1433 unclassified gene RIKEN cDNA 4930415O11 gene
Tssr152369 18 7273578 to 7273587 9 - TSS region transcription start site region 152369
Tssr152370 18 7297064 to 7297072 8 - TSS region transcription start site region 152370
Cpgi9684 18 7297759 to 7298044 285 CpG island CpG island 9684
Gm34979 18 7332445 to 7346299 13854 - lncRNA gene predicted gene, 34979
Tssr152371 18 7346010 to 7346014 4 - TSS region transcription start site region 152371
Mpp7 18 7347959 to 7626866 278907 - protein coding gene membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)
Tssr152372 18 7373736 to 7373740 4 - TSS region transcription start site region 152372
D18Mit168 18 7464450 to 7464545 95 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 168
Gm18948 18 7548987 to 7549581 594 + pseudogene predicted gene, 18948
Fabp5l2 18 7581516 to 7581920 404 + pseudogene fatty acid binding protein 5-like 2
Tssr152373 18 7583781 to 7583788 7 - TSS region transcription start site region 152373
Tssr5241 18 7585699 to 7585706 7 + TSS region transcription start site region 5241
Tssr152374 18 7608331 to 7608335 4 - TSS region transcription start site region 152374
Cpgi9685 18 7608679 to 7608967 288 CpG island CpG island 9685
Tssr152375 18 7610599 to 7610604 5 - TSS region transcription start site region 152375
Tssr149977 18 7613980 to 7613990 10 + TSS region transcription start site region 149977
Cpgi9686 18 7626159 to 7627213 1054 CpG island CpG island 9686
Tssr152376 18 7626777 to 7626792 15 - TSS region transcription start site region 152376
Tssr152377 18 7626809 to 7626880 71 - TSS region transcription start site region 152377
Gm18763 18 7684530 to 7692726 8196 - pseudogene predicted gene, 18763
Cpgi9687 18 7692737 to 7693448 711 CpG island CpG island 9687
Tssr152378 18 7703655 to 7703659 4 - TSS region transcription start site region 152378
D18Mit167 18 7756397 to 7756498 101 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 167
Gm2336 18 7798784 to 7799900 1116 - pseudogene predicted gene 2336
Gm24292 18 7835177 to 7835283 106 + snRNA gene predicted gene, 24292
Gm50027 18 7844684 to 7844935 251 - pseudogene predicted gene, 50027
Gm9993 18 7868017 to 7869112 1095 unclassified non-coding RNA gene predicted gene 9993
Cpgi9688 18 7868436 to 7870121 1685 CpG island CpG island 9688
Tssr149978 18 7868473 to 7868494 21 + TSS region transcription start site region 149978
Tssr149979 18 7868823 to 7868862 39 + TSS region transcription start site region 149979
Wac 18 7868832 to 7929028 60196 + protein coding gene WW domain containing adaptor with coiled-coil
Tssr149980 18 7868877 to 7868888 11 + TSS region transcription start site region 149980
Tssr152379 18 7869061 to 7869124 63 - TSS region transcription start site region 152379
Tssr149981 18 7869139 to 7869152 13 + TSS region transcription start site region 149981
Tssr149982 18 7869159 to 7869209 50 + TSS region transcription start site region 149982
Tssr149983 18 7869214 to 7869226 12 + TSS region transcription start site region 149983
Tssr149984 18 7869307 to 7869329 22 + TSS region transcription start site region 149984
Tssr149985 18 7869342 to 7869381 39 + TSS region transcription start site region 149985
Tssr149986 18 7869707 to 7869727 20 + TSS region transcription start site region 149986
Tssr149987 18 7869875 to 7869898 23 + TSS region transcription start site region 149987
Tssr149988 18 7877543 to 7877584 41 + TSS region transcription start site region 149988
A430102J17Rik 18 7894299 to 7895791 1492 unclassified gene RIKEN cDNA A430102J17 gene
Tssr149989 18 7901490 to 7901506 16 + TSS region transcription start site region 149989
Tssr149990 18 7905440 to 7905459 19 + TSS region transcription start site region 149990
Tssr149991 18 7916018 to 7916034 16 + TSS region transcription start site region 149991
Tssr149992 18 7916114 to 7916130 16 + TSS region transcription start site region 149992
Tssr5242 18 7926033 to 7926038 5 + TSS region transcription start site region 5242
Gm7502 18 7932782 to 7933514 732 + pseudogene predicted gene 7502
Gm4833 18 8051203 to 8051992 789 + pseudogene predicted gene 4833
Tssr152380 18 8138053 to 8138056 3 - TSS region transcription start site region 152380
Gm35031 18 8180579 to 8192719 12140 + lncRNA gene predicted gene, 35031
Gm20147 18 8227514 to 8228006 492 - pseudogene predicted gene, 20147
Gm5500 18 8415129 to 8416047 918 + pseudogene predicted pseudogene 5500
D18Mit164 18 8523874 to 8524023 149 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 164
Tssr5243 18 8562035 to 8562039 4 - TSS region transcription start site region 5243
Gm35180 18 8673921 to 8718016 44095 - lncRNA gene predicted gene, 35180
Gm35232 18 8679051 to 8679292 241 + pseudogene predicted gene, 35232
Gm5819 18 8694099 to 8694537 438 + protein coding gene predicted gene 5819
Gm26119 18 8698253 to 8698356 103 - miRNA gene predicted gene, 26119
Gm37148 18 8928235 to 8929826 1591 + unclassified gene predicted gene, 37148
Gm7523 18 8967744 to 8968796 1052 + pseudogene predicted gene 7523
Gm18526 18 9099708 to 9100255 547 - pseudogene predicted gene, 18526
Cpgi9689 18 9212018 to 9215049 3031 CpG island CpG island 9689
Tssr149993 18 9212154 to 9212171 17 + TSS region transcription start site region 149993
Tssr5244 18 9212184 to 9212193 9 + TSS region transcription start site region 5244
Tssr149994 18 9212197 to 9212200 3 + TSS region transcription start site region 149994
Fzd8 18 9212856 to 9216201 3345 + protein coding gene frizzled class receptor 8
Gjd4 18 9278607 to 9282809 4202 - protein coding gene gap junction protein, delta 4
Cpgi9690 18 9280476 to 9280896 420 CpG island CpG island 9690
Tssr152381 18 9282718 to 9282739 21 - TSS region transcription start site region 152381
Tssr152382 18 9282754 to 9282766 12 - TSS region transcription start site region 152382
Gm50053 18 9304635 to 9305080 445 + pseudogene predicted gene, 50053
Ccny 18 9314044 to 9450150 136106 - protein coding gene cyclin Y
Tssr152383 18 9315369 to 9315381 12 - TSS region transcription start site region 152383
Tssr152384 18 9329954 to 9329958 4 - TSS region transcription start site region 152384
Tssr152385 18 9376803 to 9376807 4 - TSS region transcription start site region 152385
Tssr152386 18 9400373 to 9400378 5 - TSS region transcription start site region 152386
Tssr152387 18 9414745 to 9414749 4 - TSS region transcription start site region 152387
Gm50055 18 9434823 to 9436850 2027 - unclassified gene predicted gene, 50055
Tssr152388 18 9437455 to 9437477 22 - TSS region transcription start site region 152388
Cpgi9691 18 9449073 to 9450559 1486 CpG island CpG island 9691
Tssr152389 18 9449593 to 9449600 7 - TSS region transcription start site region 152389
Tssr152390 18 9449947 to 9450043 96 - TSS region transcription start site region 152390
Tssr152391 18 9450050 to 9450061 11 - TSS region transcription start site region 152391
Tssr152392 18 9450066 to 9450075 9 - TSS region transcription start site region 152392
Tssr152393 18 9450097 to 9450161 64 - TSS region transcription start site region 152393
Tssr152394 18 9450163 to 9450174 11 - TSS region transcription start site region 152394
Tssr149995 18 9450277 to 9450298 21 + TSS region transcription start site region 149995
Gm35458 18 9465050 to 9471153 6103 - lncRNA gene predicted gene, 35458
Tssr152395 18 9485344 to 9485349 5 - TSS region transcription start site region 152395
Tssr149996 18 9485620 to 9485655 35 + TSS region transcription start site region 149996
Tssr149997 18 9487587 to 9487595 8 + TSS region transcription start site region 149997