Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:61958853-63138878

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sh3tc2 18 61953075 to 62015715 62640 + protein coding gene SH3 domain and tetratricopeptide repeats 2
Tssr151485 18 61965608 to 61965610 2 + TSS region transcription start site region 151485
Gm35778 18 62028176 to 62033936 5760 + lncRNA gene predicted gene, 35778
Gm35887 18 62044712 to 62083606 38894 - lncRNA gene predicted gene, 35887
Gm41750 18 62093209 to 62146379 53170 + lncRNA gene predicted gene, 41750
Tssr151486 18 62137545 to 62137551 6 + TSS region transcription start site region 151486
Tssr153621 18 62156670 to 62156675 5 - TSS region transcription start site region 153621
Gm36003 18 62163562 to 62167828 4266 + lncRNA gene predicted gene, 36003
Adrb2 18 62177817 to 62179959 2142 - protein coding gene adrenergic receptor, beta 2
Tssr153622 18 62177860 to 62177862 2 - TSS region transcription start site region 153622
Cpgi10125 18 62178966 to 62180620 1654 CpG island CpG island 10125
Tssr153623 18 62179948 to 62179986 38 - TSS region transcription start site region 153623
Tssr151487 18 62180119 to 62180182 63 + TSS region transcription start site region 151487
Gm9949 18 62180126 to 62184405 4279 + protein coding gene predicted gene 9949
Tssr151488 18 62182926 to 62182972 46 + TSS region transcription start site region 151488
Gm46634 18 62184471 to 62194083 9612 + lncRNA gene predicted gene, 46634
Tssr153624 18 62188865 to 62188901 36 - TSS region transcription start site region 153624
Tssr153625 18 62191458 to 62191469 11 - TSS region transcription start site region 153625
Gm36124 18 62192696 to 62211307 18611 - lncRNA gene predicted gene, 36124
D18Mit151 18 62196005 to 62196112 107 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 151
D18Mit151.1 18 62196090 to 62196200 110 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 151.1
Gm9876 18 62322074 to 62324319 2245 unclassified gene predicted gene 9876
Cpgi10126 18 62323801 to 62324529 728 CpG island CpG island 10126
Tssr151489 18 62323825 to 62323844 19 + TSS region transcription start site region 151489
Htr4 18 62324204 to 62467802 143598 + protein coding gene 5 hydroxytryptamine (serotonin) receptor 4
Tssr151490 18 62324236 to 62324248 12 + TSS region transcription start site region 151490
D18Mit228 18 62333620 to 62333726 106 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 228
Gm36316 18 62371492 to 62406537 35045 - lncRNA gene predicted gene, 36316
D18Mit139 18 62410240 to 62410361 121 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 139
Gm18653 18 62481493 to 62482129 636 - pseudogene predicted gene, 18653
Fbxo38 18 62504069 to 62548743 44674 - protein coding gene F-box protein 38
Cpgi10127 18 62548300 to 62549021 721 CpG island CpG island 10127
Tssr153626 18 62548682 to 62548717 35 - TSS region transcription start site region 153626
Tssr153627 18 62548721 to 62548765 44 - TSS region transcription start site region 153627
Tssr153628 18 62548853 to 62548878 25 - TSS region transcription start site region 153628
Tssr153629 18 62548880 to 62548894 14 - TSS region transcription start site region 153629
Spink10 18 62548911 to 62661366 112455 + protein coding gene serine peptidase inhibitor, Kazal type 10
Tssr151491 18 62548918 to 62548950 32 + TSS region transcription start site region 151491
Tssr151492 18 62548951 to 62548968 17 + TSS region transcription start site region 151492
Gm36368 18 62566463 to 62578931 12468 - lncRNA gene predicted gene, 36368
Tssr153630 18 62578926 to 62578935 9 - TSS region transcription start site region 153630
Tssr153631 18 62578937 to 62578942 5 - TSS region transcription start site region 153631
Spink7 18 62592413 to 62596264 3851 - protein coding gene serine peptidase inhibitor, Kazal type 7 (putative)
Tssr153632 18 62596320 to 62596326 6 - TSS region transcription start site region 153632
Spink13 18 62607539 to 62741387 133848 - protein coding gene serine peptidase inhibitor, Kazal type 13
Tssr153633 18 62615676 to 62615693 17 - TSS region transcription start site region 153633
Tssr153634 18 62615717 to 62615723 6 - TSS region transcription start site region 153634
Tssr153635 18 62615742 to 62615747 5 - TSS region transcription start site region 153635
Gm41751 18 62653539 to 62654995 1456 + lncRNA gene predicted gene, 41751
Tssr151493 18 62657203 to 62657212 9 + TSS region transcription start site region 151493
Tssr151494 18 62657239 to 62657245 6 + TSS region transcription start site region 151494
Tssr151495 18 62657256 to 62657279 23 + TSS region transcription start site region 151495
Tssr151496 18 62657285 to 62657303 18 + TSS region transcription start site region 151496
Tssr151497 18 62657310 to 62657313 3 + TSS region transcription start site region 151497
Tssr151498 18 62657329 to 62657340 11 + TSS region transcription start site region 151498
Tssr151499 18 62657368 to 62657370 2 + TSS region transcription start site region 151499
Gm17732 18 62662108 to 62662928 820 + protein coding gene predicted gene, 17732
Gm19159 18 62672050 to 62672833 783 + pseudogene predicted gene, 19159
Gm36598 18 62744105 to 62765941 21836 + lncRNA gene predicted gene, 36598
Tssr151500 18 62744569 to 62744594 25 + TSS region transcription start site region 151500
2700046A07Rik 18 62751674 to 62756347 4673 - lincRNA gene RIKEN cDNA 2700046A07 gene
Gm41752 18 62861969 to 62879453 17484 - lncRNA gene predicted gene, 41752
Cpgi10128 18 62921927 to 62923268 1341 CpG island CpG island 10128
Tssr151501 18 62922290 to 62922308 18 + TSS region transcription start site region 151501
Tssr151502 18 62922317 to 62922339 22 + TSS region transcription start site region 151502
Apcdd1 18 62922327 to 62953195 30868 + protein coding gene adenomatosis polyposis coli down-regulated 1
Tssr151503 18 62922422 to 62922458 36 + TSS region transcription start site region 151503
Tssr151504 18 62922481 to 62922494 13 + TSS region transcription start site region 151504
Tssr151505 18 62937209 to 62937220 11 + TSS region transcription start site region 151505
Tssr151506 18 62950071 to 62950074 3 + TSS region transcription start site region 151506
Tssr151507 18 62951211 to 62951212 1 + TSS region transcription start site region 151507
Cpgi10129 18 62977665 to 62978540 875 CpG island CpG island 10129
Tssr151508 18 62977826 to 62977839 13 + TSS region transcription start site region 151508
Napg 18 62977838 to 62999450 21612 + protein coding gene N-ethylmaleimide sensitive fusion protein attachment protein gamma
Tssr151509 18 62977854 to 62977931 77 + TSS region transcription start site region 151509
Tssr151510 18 62977934 to 62977952 18 + TSS region transcription start site region 151510
Tssr151511 18 62994875 to 62994886 11 + TSS region transcription start site region 151511
Tssr151512 18 62994889 to 62994923 34 + TSS region transcription start site region 151512
Piezo2 18 63010213 to 63387183 376970 - protein coding gene piezo-type mechanosensitive ion channel component 2
Gm36651 18 63050708 to 63068897 18189 + lncRNA gene predicted gene, 36651
Tssr153636 18 63087476 to 63087480 4 - TSS region transcription start site region 153636