Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:61733562-62597828

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Afap1l1 18 61730262 to 61786662 56400 - protein coding gene actin filament associated protein 1-like 1
Tssr153610 18 61735671 to 61735682 11 - TSS region transcription start site region 153610
Tssr153611 18 61737340 to 61737376 36 - TSS region transcription start site region 153611
Cpgi10119 18 61737376 to 61737589 213 CpG island CpG island 10119
Cpgi10120 18 61751520 to 61751740 220 CpG island CpG island 10120
Tssr153612 18 61754923 to 61754929 6 - TSS region transcription start site region 153612
Gm41748 18 61779781 to 61782843 3062 + lncRNA gene predicted gene, 41748
Cpgi10121 18 61786201 to 61787010 809 CpG island CpG island 10121
Tssr153613 18 61786636 to 61786691 55 - TSS region transcription start site region 153613
Gm35919 18 61794853 to 61799862 5009 - pseudogene predicted gene, 35919
Ablim3 18 61799395 to 61911852 112457 - protein coding gene actin binding LIM protein family, member 3
Cpgi10122 18 61799603 to 61800008 405 CpG island CpG island 10122
Tssr153614 18 61826997 to 61827037 40 - TSS region transcription start site region 153614
Tssr5348 18 61827051 to 61827056 5 - TSS region transcription start site region 5348
Tssr5349 18 61884673 to 61884676 3 - TSS region transcription start site region 5349
Cpgi10123 18 61910933 to 61912117 1184 CpG island CpG island 10123
Tssr153615 18 61911533 to 61911610 77 - TSS region transcription start site region 153615
Tssr153616 18 61911747 to 61911758 11 - TSS region transcription start site region 153616
Tssr153617 18 61911783 to 61911854 71 - TSS region transcription start site region 153617
Tssr153618 18 61911880 to 61911888 8 - TSS region transcription start site region 153618
Tssr153619 18 61930228 to 61930250 22 - TSS region transcription start site region 153619
Tssr153620 18 61930251 to 61930274 23 - TSS region transcription start site region 153620
Gm37774 18 61934976 to 61935220 244 - unclassified gene predicted gene, 37774
D18Mit152 18 61936767 to 61936906 139 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 152
Gm35720 18 61937361 to 61940077 2716 + lncRNA gene predicted gene, 35720
Tssr151483 18 61952960 to 61952997 37 + TSS region transcription start site region 151483
Tssr151484 18 61953048 to 61953121 73 + TSS region transcription start site region 151484
Sh3tc2 18 61953075 to 62015715 62640 + protein coding gene SH3 domain and tetratricopeptide repeats 2
Cpgi10124 18 61953561 to 61953714 153 CpG island CpG island 10124
Tssr151485 18 61965608 to 61965610 2 + TSS region transcription start site region 151485
Gm35778 18 62028176 to 62033936 5760 + lncRNA gene predicted gene, 35778
Gm35887 18 62044712 to 62083606 38894 - lncRNA gene predicted gene, 35887
Gm41750 18 62093209 to 62146379 53170 + lncRNA gene predicted gene, 41750
Tssr151486 18 62137545 to 62137551 6 + TSS region transcription start site region 151486
Tssr153621 18 62156670 to 62156675 5 - TSS region transcription start site region 153621
Gm36003 18 62163562 to 62167828 4266 + lncRNA gene predicted gene, 36003
Adrb2 18 62177817 to 62179959 2142 - protein coding gene adrenergic receptor, beta 2
Tssr153622 18 62177860 to 62177862 2 - TSS region transcription start site region 153622
Cpgi10125 18 62178966 to 62180620 1654 CpG island CpG island 10125
Tssr153623 18 62179948 to 62179986 38 - TSS region transcription start site region 153623
Tssr151487 18 62180119 to 62180182 63 + TSS region transcription start site region 151487
Gm9949 18 62180126 to 62184405 4279 + protein coding gene predicted gene 9949
Tssr151488 18 62182926 to 62182972 46 + TSS region transcription start site region 151488
Gm46634 18 62184471 to 62194083 9612 + lncRNA gene predicted gene, 46634
Tssr153624 18 62188865 to 62188901 36 - TSS region transcription start site region 153624
Tssr153625 18 62191458 to 62191469 11 - TSS region transcription start site region 153625
Gm36124 18 62192696 to 62211307 18611 - lncRNA gene predicted gene, 36124
D18Mit151 18 62196005 to 62196112 107 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 151
D18Mit151.1 18 62196090 to 62196200 110 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 151.1
Gm9876 18 62322074 to 62324319 2245 unclassified gene predicted gene 9876
Cpgi10126 18 62323801 to 62324529 728 CpG island CpG island 10126
Tssr151489 18 62323825 to 62323844 19 + TSS region transcription start site region 151489
Htr4 18 62324204 to 62467802 143598 + protein coding gene 5 hydroxytryptamine (serotonin) receptor 4
Tssr151490 18 62324236 to 62324248 12 + TSS region transcription start site region 151490
D18Mit228 18 62333620 to 62333726 106 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 228
Gm36316 18 62371492 to 62406537 35045 - lncRNA gene predicted gene, 36316
D18Mit139 18 62410240 to 62410361 121 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 139
Gm18653 18 62481493 to 62482129 636 - pseudogene predicted gene, 18653
Fbxo38 18 62504069 to 62548743 44674 - protein coding gene F-box protein 38
Cpgi10127 18 62548300 to 62549021 721 CpG island CpG island 10127
Tssr153626 18 62548682 to 62548717 35 - TSS region transcription start site region 153626
Tssr153627 18 62548721 to 62548765 44 - TSS region transcription start site region 153627
Tssr153628 18 62548853 to 62548878 25 - TSS region transcription start site region 153628
Tssr153629 18 62548880 to 62548894 14 - TSS region transcription start site region 153629
Spink10 18 62548911 to 62661366 112455 + protein coding gene serine peptidase inhibitor, Kazal type 10
Tssr151491 18 62548918 to 62548950 32 + TSS region transcription start site region 151491
Tssr151492 18 62548951 to 62548968 17 + TSS region transcription start site region 151492
Gm36368 18 62566463 to 62578931 12468 - lncRNA gene predicted gene, 36368
Tssr153630 18 62578926 to 62578935 9 - TSS region transcription start site region 153630
Tssr153631 18 62578937 to 62578942 5 - TSS region transcription start site region 153631
Spink7 18 62592413 to 62596264 3851 - protein coding gene serine peptidase inhibitor, Kazal type 7 (putative)
Tssr153632 18 62596320 to 62596326 6 - TSS region transcription start site region 153632