Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:61649392-62061824

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Carmn 18 61649625 to 61665537 15912 - lincRNA gene cardiac mesoderm enhancer-associated non-coding RNA
Tssr153586 18 61652357 to 61652373 16 - TSS region transcription start site region 153586
Tssr153587 18 61652386 to 61652397 11 - TSS region transcription start site region 153587
Tssr153588 18 61652419 to 61652440 21 - TSS region transcription start site region 153588
Tssr153589 18 61652449 to 61652464 15 - TSS region transcription start site region 153589
Tssr153590 18 61657881 to 61657927 46 - TSS region transcription start site region 153590
Tssr153591 18 61657956 to 61657972 16 - TSS region transcription start site region 153591
Tssr153592 18 61657977 to 61658007 30 - TSS region transcription start site region 153592
Tssr153593 18 61658014 to 61658029 15 - TSS region transcription start site region 153593
Tssr153594 18 61658048 to 61658135 87 - TSS region transcription start site region 153594
Tssr153595 18 61658140 to 61658156 16 - TSS region transcription start site region 153595
Tssr153596 18 61658169 to 61658184 15 - TSS region transcription start site region 153596
Tssr153597 18 61658266 to 61658280 14 - TSS region transcription start site region 153597
Tssr153598 18 61658312 to 61658333 21 - TSS region transcription start site region 153598
Tssr153599 18 61665401 to 61665416 15 - TSS region transcription start site region 153599
Tssr153600 18 61665484 to 61665502 18 - TSS region transcription start site region 153600
Tssr153601 18 61665525 to 61665532 7 - TSS region transcription start site region 153601
Tssr151480 18 61687911 to 61687922 11 + TSS region transcription start site region 151480
Il17b 18 61687935 to 61692537 4602 + protein coding gene interleukin 17B
Gm38165 18 61691037 to 61692246 1209 - antisense lncRNA gene predicted gene, 38165
Cpgi10114 18 61692073 to 61692623 550 CpG island CpG island 10114
Pcyox1l 18 61696837 to 61707635 10798 - protein coding gene prenylcysteine oxidase 1 like
Tssr153602 18 61697093 to 61697097 4 - TSS region transcription start site region 153602
Cpgi10115 18 61697253 to 61698031 778 CpG island CpG island 10115
Cpgi10116 18 61702218 to 61702431 213 CpG island CpG island 10116
Cpgi10117 18 61707025 to 61707995 970 CpG island CpG island 10117
Tssr153603 18 61707583 to 61707658 75 - TSS region transcription start site region 153603
Grpel2 18 61712440 to 61726331 13891 - protein coding gene GrpE-like 2, mitochondrial
Gm17883 18 61713695 to 61714683 988 + pseudogene predicted gene, 17883
Tssr153604 18 61719318 to 61719332 14 - TSS region transcription start site region 153604
Tssr153605 18 61719347 to 61719360 13 - TSS region transcription start site region 153605
Tssr153606 18 61719795 to 61719833 38 - TSS region transcription start site region 153606
Tssr153607 18 61725425 to 61725468 43 - TSS region transcription start site region 153607
Tssr151481 18 61725720 to 61725734 14 + TSS region transcription start site region 151481
Cpgi10118 18 61725949 to 61726870 921 CpG island CpG island 10118
Tssr153608 18 61726302 to 61726336 34 - TSS region transcription start site region 153608
Tssr153609 18 61726347 to 61726358 11 - TSS region transcription start site region 153609
1500015A07Rik 18 61726390 to 61728254 1864 + antisense lncRNA gene RIKEN cDNA 1500015A07 gene
Tssr151482 18 61726393 to 61726451 58 + TSS region transcription start site region 151482
Afap1l1 18 61730262 to 61786662 56400 - protein coding gene actin filament associated protein 1-like 1
Tssr153610 18 61735671 to 61735682 11 - TSS region transcription start site region 153610
Tssr153611 18 61737340 to 61737376 36 - TSS region transcription start site region 153611
Cpgi10119 18 61737376 to 61737589 213 CpG island CpG island 10119
Cpgi10120 18 61751520 to 61751740 220 CpG island CpG island 10120
Tssr153612 18 61754923 to 61754929 6 - TSS region transcription start site region 153612
Gm41748 18 61779781 to 61782843 3062 + lncRNA gene predicted gene, 41748
Cpgi10121 18 61786201 to 61787010 809 CpG island CpG island 10121
Tssr153613 18 61786636 to 61786691 55 - TSS region transcription start site region 153613
Gm35919 18 61794853 to 61799862 5009 - pseudogene predicted gene, 35919
Ablim3 18 61799395 to 61911852 112457 - protein coding gene actin binding LIM protein family, member 3
Cpgi10122 18 61799603 to 61800008 405 CpG island CpG island 10122
Tssr153614 18 61826997 to 61827037 40 - TSS region transcription start site region 153614
Tssr5348 18 61827051 to 61827056 5 - TSS region transcription start site region 5348
Tssr5349 18 61884673 to 61884676 3 - TSS region transcription start site region 5349
Cpgi10123 18 61910933 to 61912117 1184 CpG island CpG island 10123
Tssr153615 18 61911533 to 61911610 77 - TSS region transcription start site region 153615
Tssr153616 18 61911747 to 61911758 11 - TSS region transcription start site region 153616
Tssr153617 18 61911783 to 61911854 71 - TSS region transcription start site region 153617
Tssr153618 18 61911880 to 61911888 8 - TSS region transcription start site region 153618
Tssr153619 18 61930228 to 61930250 22 - TSS region transcription start site region 153619
Tssr153620 18 61930251 to 61930274 23 - TSS region transcription start site region 153620
Gm37774 18 61934976 to 61935220 244 - unclassified gene predicted gene, 37774
D18Mit152 18 61936767 to 61936906 139 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 152
Gm35720 18 61937361 to 61940077 2716 + lncRNA gene predicted gene, 35720
Tssr151483 18 61952960 to 61952997 37 + TSS region transcription start site region 151483
Tssr151484 18 61953048 to 61953121 73 + TSS region transcription start site region 151484
Sh3tc2 18 61953075 to 62015715 62640 + protein coding gene SH3 domain and tetratricopeptide repeats 2
Cpgi10124 18 61953561 to 61953714 153 CpG island CpG island 10124
Tssr151485 18 61965608 to 61965610 2 + TSS region transcription start site region 151485
Gm35778 18 62028176 to 62033936 5760 + lncRNA gene predicted gene, 35778
Gm35887 18 62044712 to 62083606 38894 - lncRNA gene predicted gene, 35887