Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:61582203-63732212

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212 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Csnk1a1 18 61555274 to 61590061 34787 + protein coding gene casein kinase 1, alpha 1
Tssr151473 18 61587474 to 61587495 21 + TSS region transcription start site region 151473
Tssr151474 18 61587569 to 61587620 51 + TSS region transcription start site region 151474
Tssr151475 18 61589215 to 61589228 13 + TSS region transcription start site region 151475
C630007K24Rik 18 61591370 to 61593059 1689 unclassified gene RIKEN cDNA C630007K24 gene
Gm41747 18 61619900 to 61621042 1142 + lncRNA gene predicted gene, 41747
Tssr153576 18 61624060 to 61624094 34 - TSS region transcription start site region 153576
Tssr153577 18 61626434 to 61626445 11 - TSS region transcription start site region 153577
Gm35607 18 61628032 to 61642168 14136 - lncRNA gene predicted gene, 35607
Tssr153578 18 61628154 to 61628190 36 - TSS region transcription start site region 153578
Tssr151476 18 61628347 to 61628367 20 + TSS region transcription start site region 151476
Tssr153579 18 61632515 to 61632540 25 - TSS region transcription start site region 153579
Tssr153580 18 61632681 to 61632691 10 - TSS region transcription start site region 153580
Tssr151477 18 61632710 to 61632725 15 + TSS region transcription start site region 151477
Tssr151478 18 61632940 to 61632982 42 + TSS region transcription start site region 151478
Tssr153581 18 61635389 to 61635396 7 - TSS region transcription start site region 153581
Tssr151479 18 61639603 to 61639632 29 + TSS region transcription start site region 151479
Bvht 18 61639653 to 61647485 7832 + lincRNA gene braveheart long non-coding RNA
Tssr153582 18 61639874 to 61639885 11 - TSS region transcription start site region 153582
Tssr153583 18 61646316 to 61646321 5 - TSS region transcription start site region 153583
Tssr153584 18 61646667 to 61646673 6 - TSS region transcription start site region 153584
Cpgi10112 18 61647744 to 61648014 270 CpG island CpG island 10112
Tssr153585 18 61647824 to 61647828 4 - TSS region transcription start site region 153585
Mir145a 18 61647825 to 61647894 69 - miRNA gene microRNA 145a
Mirc32 18 61647825 to 61649258 1433 complex/cluster/region microRNA cluster 32, including Mir143 and Mir145a
Cpgi10113 18 61649120 to 61649331 211 CpG island CpG island 10113
Mir143 18 61649196 to 61649258 62 - miRNA gene microRNA 143
Carmn 18 61649625 to 61665537 15912 - lincRNA gene cardiac mesoderm enhancer-associated non-coding RNA
Tssr153586 18 61652357 to 61652373 16 - TSS region transcription start site region 153586
Tssr153587 18 61652386 to 61652397 11 - TSS region transcription start site region 153587
Tssr153588 18 61652419 to 61652440 21 - TSS region transcription start site region 153588
Tssr153589 18 61652449 to 61652464 15 - TSS region transcription start site region 153589
Tssr153590 18 61657881 to 61657927 46 - TSS region transcription start site region 153590
Tssr153591 18 61657956 to 61657972 16 - TSS region transcription start site region 153591
Tssr153592 18 61657977 to 61658007 30 - TSS region transcription start site region 153592
Tssr153593 18 61658014 to 61658029 15 - TSS region transcription start site region 153593
Tssr153594 18 61658048 to 61658135 87 - TSS region transcription start site region 153594
Tssr153595 18 61658140 to 61658156 16 - TSS region transcription start site region 153595
Tssr153596 18 61658169 to 61658184 15 - TSS region transcription start site region 153596
Tssr153597 18 61658266 to 61658280 14 - TSS region transcription start site region 153597
Tssr153598 18 61658312 to 61658333 21 - TSS region transcription start site region 153598
Tssr153599 18 61665401 to 61665416 15 - TSS region transcription start site region 153599
Tssr153600 18 61665484 to 61665502 18 - TSS region transcription start site region 153600
Tssr153601 18 61665525 to 61665532 7 - TSS region transcription start site region 153601
Tssr151480 18 61687911 to 61687922 11 + TSS region transcription start site region 151480
Il17b 18 61687935 to 61692537 4602 + protein coding gene interleukin 17B
Gm38165 18 61691037 to 61692246 1209 - antisense lncRNA gene predicted gene, 38165
Cpgi10114 18 61692073 to 61692623 550 CpG island CpG island 10114
Pcyox1l 18 61696837 to 61707635 10798 - protein coding gene prenylcysteine oxidase 1 like
Tssr153602 18 61697093 to 61697097 4 - TSS region transcription start site region 153602
Cpgi10115 18 61697253 to 61698031 778 CpG island CpG island 10115
Cpgi10116 18 61702218 to 61702431 213 CpG island CpG island 10116
Cpgi10117 18 61707025 to 61707995 970 CpG island CpG island 10117
Tssr153603 18 61707583 to 61707658 75 - TSS region transcription start site region 153603
Grpel2 18 61712440 to 61726331 13891 - protein coding gene GrpE-like 2, mitochondrial
Gm17883 18 61713695 to 61714683 988 + pseudogene predicted gene, 17883
Tssr153604 18 61719318 to 61719332 14 - TSS region transcription start site region 153604
Tssr153605 18 61719347 to 61719360 13 - TSS region transcription start site region 153605
Tssr153606 18 61719795 to 61719833 38 - TSS region transcription start site region 153606
Tssr153607 18 61725425 to 61725468 43 - TSS region transcription start site region 153607
Tssr151481 18 61725720 to 61725734 14 + TSS region transcription start site region 151481
Cpgi10118 18 61725949 to 61726870 921 CpG island CpG island 10118
Tssr153608 18 61726302 to 61726336 34 - TSS region transcription start site region 153608
Tssr153609 18 61726347 to 61726358 11 - TSS region transcription start site region 153609
1500015A07Rik 18 61726390 to 61728254 1864 + antisense lncRNA gene RIKEN cDNA 1500015A07 gene
Tssr151482 18 61726393 to 61726451 58 + TSS region transcription start site region 151482
Afap1l1 18 61730262 to 61786662 56400 - protein coding gene actin filament associated protein 1-like 1
Tssr153610 18 61735671 to 61735682 11 - TSS region transcription start site region 153610
Tssr153611 18 61737340 to 61737376 36 - TSS region transcription start site region 153611
Cpgi10119 18 61737376 to 61737589 213 CpG island CpG island 10119
Cpgi10120 18 61751520 to 61751740 220 CpG island CpG island 10120
Tssr153612 18 61754923 to 61754929 6 - TSS region transcription start site region 153612
Gm41748 18 61779781 to 61782843 3062 + lncRNA gene predicted gene, 41748
Cpgi10121 18 61786201 to 61787010 809 CpG island CpG island 10121
Tssr153613 18 61786636 to 61786691 55 - TSS region transcription start site region 153613
Gm35919 18 61794853 to 61799862 5009 - pseudogene predicted gene, 35919
Ablim3 18 61799395 to 61911852 112457 - protein coding gene actin binding LIM protein family, member 3
Cpgi10122 18 61799603 to 61800008 405 CpG island CpG island 10122
Tssr153614 18 61826997 to 61827037 40 - TSS region transcription start site region 153614
Tssr5348 18 61827051 to 61827056 5 - TSS region transcription start site region 5348
Tssr5349 18 61884673 to 61884676 3 - TSS region transcription start site region 5349
Cpgi10123 18 61910933 to 61912117 1184 CpG island CpG island 10123
Tssr153615 18 61911533 to 61911610 77 - TSS region transcription start site region 153615
Tssr153616 18 61911747 to 61911758 11 - TSS region transcription start site region 153616
Tssr153617 18 61911783 to 61911854 71 - TSS region transcription start site region 153617
Tssr153618 18 61911880 to 61911888 8 - TSS region transcription start site region 153618
Tssr153619 18 61930228 to 61930250 22 - TSS region transcription start site region 153619
Tssr153620 18 61930251 to 61930274 23 - TSS region transcription start site region 153620
Gm37774 18 61934976 to 61935220 244 - unclassified gene predicted gene, 37774
D18Mit152 18 61936767 to 61936906 139 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 152
Gm35720 18 61937361 to 61940077 2716 + lncRNA gene predicted gene, 35720
Tssr151483 18 61952960 to 61952997 37 + TSS region transcription start site region 151483
Tssr151484 18 61953048 to 61953121 73 + TSS region transcription start site region 151484
Sh3tc2 18 61953075 to 62015715 62640 + protein coding gene SH3 domain and tetratricopeptide repeats 2
Cpgi10124 18 61953561 to 61953714 153 CpG island CpG island 10124
Tssr151485 18 61965608 to 61965610 2 + TSS region transcription start site region 151485
Gm35778 18 62028176 to 62033936 5760 + lncRNA gene predicted gene, 35778
Gm35887 18 62044712 to 62083606 38894 - lncRNA gene predicted gene, 35887
Gm41750 18 62093209 to 62146379 53170 + lncRNA gene predicted gene, 41750
Tssr151486 18 62137545 to 62137551 6 + TSS region transcription start site region 151486
Tssr153621 18 62156670 to 62156675 5 - TSS region transcription start site region 153621
Gm36003 18 62163562 to 62167828 4266 + lncRNA gene predicted gene, 36003
Adrb2 18 62177817 to 62179959 2142 - protein coding gene adrenergic receptor, beta 2
Tssr153622 18 62177860 to 62177862 2 - TSS region transcription start site region 153622
Cpgi10125 18 62178966 to 62180620 1654 CpG island CpG island 10125
Tssr153623 18 62179948 to 62179986 38 - TSS region transcription start site region 153623
Tssr151487 18 62180119 to 62180182 63 + TSS region transcription start site region 151487
Gm9949 18 62180126 to 62184405 4279 + protein coding gene predicted gene 9949
Tssr151488 18 62182926 to 62182972 46 + TSS region transcription start site region 151488
Gm46634 18 62184471 to 62194083 9612 + lncRNA gene predicted gene, 46634
Tssr153624 18 62188865 to 62188901 36 - TSS region transcription start site region 153624
Tssr153625 18 62191458 to 62191469 11 - TSS region transcription start site region 153625
Gm36124 18 62192696 to 62211307 18611 - lncRNA gene predicted gene, 36124
D18Mit151 18 62196005 to 62196112 107 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 151
D18Mit151.1 18 62196090 to 62196200 110 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 151.1
Gm9876 18 62322074 to 62324319 2245 unclassified gene predicted gene 9876
Cpgi10126 18 62323801 to 62324529 728 CpG island CpG island 10126
Tssr151489 18 62323825 to 62323844 19 + TSS region transcription start site region 151489
Htr4 18 62324204 to 62467802 143598 + protein coding gene 5 hydroxytryptamine (serotonin) receptor 4
Tssr151490 18 62324236 to 62324248 12 + TSS region transcription start site region 151490
D18Mit228 18 62333620 to 62333726 106 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 228
Gm36316 18 62371492 to 62406537 35045 - lncRNA gene predicted gene, 36316
D18Mit139 18 62410240 to 62410361 121 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 139
Gm18653 18 62481493 to 62482129 636 - pseudogene predicted gene, 18653
Fbxo38 18 62504069 to 62548743 44674 - protein coding gene F-box protein 38
Cpgi10127 18 62548300 to 62549021 721 CpG island CpG island 10127
Tssr153626 18 62548682 to 62548717 35 - TSS region transcription start site region 153626
Tssr153627 18 62548721 to 62548765 44 - TSS region transcription start site region 153627
Tssr153628 18 62548853 to 62548878 25 - TSS region transcription start site region 153628
Tssr153629 18 62548880 to 62548894 14 - TSS region transcription start site region 153629
Spink10 18 62548911 to 62661366 112455 + protein coding gene serine peptidase inhibitor, Kazal type 10
Tssr151491 18 62548918 to 62548950 32 + TSS region transcription start site region 151491
Tssr151492 18 62548951 to 62548968 17 + TSS region transcription start site region 151492
Gm36368 18 62566463 to 62578931 12468 - lncRNA gene predicted gene, 36368
Tssr153630 18 62578926 to 62578935 9 - TSS region transcription start site region 153630
Tssr153631 18 62578937 to 62578942 5 - TSS region transcription start site region 153631
Spink7 18 62592413 to 62596264 3851 - protein coding gene serine peptidase inhibitor, Kazal type 7 (putative)
Tssr153632 18 62596320 to 62596326 6 - TSS region transcription start site region 153632
Spink13 18 62607539 to 62741387 133848 - protein coding gene serine peptidase inhibitor, Kazal type 13
Tssr153633 18 62615676 to 62615693 17 - TSS region transcription start site region 153633
Tssr153634 18 62615717 to 62615723 6 - TSS region transcription start site region 153634
Tssr153635 18 62615742 to 62615747 5 - TSS region transcription start site region 153635
Gm41751 18 62653539 to 62654995 1456 + lncRNA gene predicted gene, 41751
Tssr151493 18 62657203 to 62657212 9 + TSS region transcription start site region 151493
Tssr151494 18 62657239 to 62657245 6 + TSS region transcription start site region 151494
Tssr151495 18 62657256 to 62657279 23 + TSS region transcription start site region 151495
Tssr151496 18 62657285 to 62657303 18 + TSS region transcription start site region 151496
Tssr151497 18 62657310 to 62657313 3 + TSS region transcription start site region 151497
Tssr151498 18 62657329 to 62657340 11 + TSS region transcription start site region 151498
Tssr151499 18 62657368 to 62657370 2 + TSS region transcription start site region 151499
Gm17732 18 62662108 to 62662928 820 + protein coding gene predicted gene, 17732
Gm19159 18 62672050 to 62672833 783 + pseudogene predicted gene, 19159
Gm36598 18 62744105 to 62765941 21836 + lncRNA gene predicted gene, 36598
Tssr151500 18 62744569 to 62744594 25 + TSS region transcription start site region 151500
2700046A07Rik 18 62751674 to 62756347 4673 - lincRNA gene RIKEN cDNA 2700046A07 gene
Gm41752 18 62861969 to 62879453 17484 - lncRNA gene predicted gene, 41752
Cpgi10128 18 62921927 to 62923268 1341 CpG island CpG island 10128
Tssr151501 18 62922290 to 62922308 18 + TSS region transcription start site region 151501
Tssr151502 18 62922317 to 62922339 22 + TSS region transcription start site region 151502
Apcdd1 18 62922327 to 62953195 30868 + protein coding gene adenomatosis polyposis coli down-regulated 1
Tssr151503 18 62922422 to 62922458 36 + TSS region transcription start site region 151503
Tssr151504 18 62922481 to 62922494 13 + TSS region transcription start site region 151504
Tssr151505 18 62937209 to 62937220 11 + TSS region transcription start site region 151505
Tssr151506 18 62950071 to 62950074 3 + TSS region transcription start site region 151506
Tssr151507 18 62951211 to 62951212 1 + TSS region transcription start site region 151507
Cpgi10129 18 62977665 to 62978540 875 CpG island CpG island 10129
Tssr151508 18 62977826 to 62977839 13 + TSS region transcription start site region 151508
Napg 18 62977838 to 62999450 21612 + protein coding gene N-ethylmaleimide sensitive fusion protein attachment protein gamma
Tssr151509 18 62977854 to 62977931 77 + TSS region transcription start site region 151509
Tssr151510 18 62977934 to 62977952 18 + TSS region transcription start site region 151510
Tssr151511 18 62994875 to 62994886 11 + TSS region transcription start site region 151511
Tssr151512 18 62994889 to 62994923 34 + TSS region transcription start site region 151512
Piezo2 18 63010213 to 63387183 376970 - protein coding gene piezo-type mechanosensitive ion channel component 2
Gm36651 18 63050708 to 63068897 18189 + lncRNA gene predicted gene, 36651
Tssr153636 18 63087476 to 63087480 4 - TSS region transcription start site region 153636
Tssr151513 18 63150835 to 63150841 6 + TSS region transcription start site region 151513
Carcdq2 18 63290216 to 63290216 0 QTL cardiac collagen deposition QTL 2
Cpgi10130 18 63385984 to 63387396 1412 CpG island CpG island 10130
Tssr153637 18 63386495 to 63386507 12 - TSS region transcription start site region 153637
Tssr153638 18 63386511 to 63386526 15 - TSS region transcription start site region 153638
Tssr5350 18 63387045 to 63387054 9 - TSS region transcription start site region 5350
Tssr153639 18 63387124 to 63387189 65 - TSS region transcription start site region 153639
Gm26972 18 63399245 to 63402876 3631 + lincRNA gene predicted gene, 26972
Cpgi10131 18 63492004 to 63492350 346 CpG island CpG island 10131
Gm23581 18 63508169 to 63508231 62 + snRNA gene predicted gene, 23581
Gm22560 18 63509895 to 63510014 119 + rRNA gene predicted gene, 22560
Gm22210 18 63533068 to 63533211 143 + snoRNA gene predicted gene, 22210
Gm6789 18 63543434 to 63545204 1770 - pseudogene predicted gene 6789
Tssr153640 18 63545196 to 63545206 10 - TSS region transcription start site region 153640
Gm24848 18 63584736 to 63584842 106 + snRNA gene predicted gene, 24848
Txnl1 18 63662801 to 63692359 29558 - protein coding gene thioredoxin-like 1
Mcsq1 18 63670000 to 65295000 1625000 QTL methacholine sensitivity QTL 1, baseline
Tssr153641 18 63682254 to 63682265 11 - TSS region transcription start site region 153641
Tssr153642 18 63682273 to 63682312 39 - TSS region transcription start site region 153642
Cpgi10132 18 63691709 to 63692798 1089 CpG island CpG island 10132
Tssr153643 18 63692217 to 63692228 11 - TSS region transcription start site region 153643
Tssr153644 18 63692279 to 63692290 11 - TSS region transcription start site region 153644
Tssr153645 18 63692291 to 63692302 11 - TSS region transcription start site region 153645
Tssr153646 18 63692309 to 63692338 29 - TSS region transcription start site region 153646
Tssr153647 18 63692341 to 63692374 33 - TSS region transcription start site region 153647