Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:61275463-61525470

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32 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pde6a 18 61220499 to 61289750 69251 + protein coding gene phosphodiesterase 6A, cGMP-specific, rod, alpha
Tssr153553 18 61289713 to 61289715 2 - TSS region transcription start site region 153553
Ppargc1b 18 61298136 to 61400431 102295 - protein coding gene peroxisome proliferative activated receptor, gamma, coactivator 1 beta
Gm46627 18 61298402 to 61302631 4229 + lncRNA gene predicted gene, 46627
Tssr5346 18 61315945 to 61315947 2 - TSS region transcription start site region 5346
Tssr153554 18 61331502 to 61331515 13 - TSS region transcription start site region 153554
Tssr153555 18 61353391 to 61353408 17 - TSS region transcription start site region 153555
Tssr153556 18 61375061 to 61375169 108 - TSS region transcription start site region 153556
Tssr153557 18 61375170 to 61375186 16 - TSS region transcription start site region 153557
Tssr153558 18 61375189 to 61375236 47 - TSS region transcription start site region 153558
Tssr153559 18 61375238 to 61375254 16 - TSS region transcription start site region 153559
Tssr153560 18 61375390 to 61375406 16 - TSS region transcription start site region 153560
Tssr153561 18 61375424 to 61375437 13 - TSS region transcription start site region 153561
Tssr153562 18 61375475 to 61375492 17 - TSS region transcription start site region 153562
Gm25301 18 61397813 to 61397925 112 + miRNA gene predicted gene, 25301
Mir378a 18 61397835 to 61397900 65 - miRNA gene microRNA 378a
Cpgi10108 18 61398327 to 61400923 2596 CpG island CpG island 10108
Tssr153563 18 61398980 to 61399031 51 - TSS region transcription start site region 153563
Tssr151463 18 61399169 to 61399195 26 + TSS region transcription start site region 151463
Tssr153564 18 61400363 to 61400449 86 - TSS region transcription start site region 153564
Tssr153565 18 61400463 to 61400470 7 - TSS region transcription start site region 153565
Gm8755 18 61433497 to 61434201 704 - pseudogene predicted gene 8755
Tssr151464 18 61448250 to 61448261 11 + TSS region transcription start site region 151464
Gm25834 18 61467053 to 61467153 100 - snRNA gene predicted gene, 25834
Lncbate10 18 61470225 to 61484607 14382 - lncRNA gene brown adipose tissue enriched long noncoding RNA 10
Tssr153566 18 61484572 to 61484575 3 - TSS region transcription start site region 153566
Tssr153567 18 61484600 to 61484613 13 - TSS region transcription start site region 153567
Tssr153568 18 61484754 to 61484779 25 - TSS region transcription start site region 153568
Gm46637 18 61484766 to 61490132 5366 + protein coding gene predicted gene, 46637
Tssr153569 18 61484810 to 61484829 19 - TSS region transcription start site region 153569
Arhgef37 18 61493794 to 61536536 42742 - protein coding gene Rho guanine nucleotide exchange factor (GEF) 37
Cpgi10109 18 61505420 to 61505725 305 CpG island CpG island 10109