Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:61213497-61654201

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr151460 18 61220467 to 61220486 19 + TSS region transcription start site region 151460
Pde6a 18 61220499 to 61289750 69251 + protein coding gene phosphodiesterase 6A, cGMP-specific, rod, alpha
Tssr153550 18 61224330 to 61224336 6 - TSS region transcription start site region 153550
Tssr153551 18 61224342 to 61224357 15 - TSS region transcription start site region 153551
Tssr151461 18 61256794 to 61256800 6 + TSS region transcription start site region 151461
Cpgi10107 18 61256984 to 61257260 276 CpG island CpG island 10107
Rps2-ps10 18 61259039 to 61259987 948 - pseudogene ribosomal protein S2, pseudogene 10
Tssr153552 18 61259987 to 61259988 1 - TSS region transcription start site region 153552
Tssr151462 18 61275002 to 61275041 39 + TSS region transcription start site region 151462
Tssr153553 18 61289713 to 61289715 2 - TSS region transcription start site region 153553
Ppargc1b 18 61298136 to 61400431 102295 - protein coding gene peroxisome proliferative activated receptor, gamma, coactivator 1 beta
Gm46627 18 61298402 to 61302631 4229 + lncRNA gene predicted gene, 46627
Tssr5346 18 61315945 to 61315947 2 - TSS region transcription start site region 5346
Tssr153554 18 61331502 to 61331515 13 - TSS region transcription start site region 153554
Tssr153555 18 61353391 to 61353408 17 - TSS region transcription start site region 153555
Tssr153556 18 61375061 to 61375169 108 - TSS region transcription start site region 153556
Tssr153557 18 61375170 to 61375186 16 - TSS region transcription start site region 153557
Tssr153558 18 61375189 to 61375236 47 - TSS region transcription start site region 153558
Tssr153559 18 61375238 to 61375254 16 - TSS region transcription start site region 153559
Tssr153560 18 61375390 to 61375406 16 - TSS region transcription start site region 153560
Tssr153561 18 61375424 to 61375437 13 - TSS region transcription start site region 153561
Tssr153562 18 61375475 to 61375492 17 - TSS region transcription start site region 153562
Gm25301 18 61397813 to 61397925 112 + miRNA gene predicted gene, 25301
Mir378a 18 61397835 to 61397900 65 - miRNA gene microRNA 378a
Cpgi10108 18 61398327 to 61400923 2596 CpG island CpG island 10108
Tssr153563 18 61398980 to 61399031 51 - TSS region transcription start site region 153563
Tssr151463 18 61399169 to 61399195 26 + TSS region transcription start site region 151463
Tssr153564 18 61400363 to 61400449 86 - TSS region transcription start site region 153564
Tssr153565 18 61400463 to 61400470 7 - TSS region transcription start site region 153565
Gm8755 18 61433497 to 61434201 704 - pseudogene predicted gene 8755
Tssr151464 18 61448250 to 61448261 11 + TSS region transcription start site region 151464
Gm25834 18 61467053 to 61467153 100 - snRNA gene predicted gene, 25834
Lncbate10 18 61470225 to 61484607 14382 - lncRNA gene brown adipose tissue enriched long noncoding RNA 10
Tssr153566 18 61484572 to 61484575 3 - TSS region transcription start site region 153566
Tssr153567 18 61484600 to 61484613 13 - TSS region transcription start site region 153567
Tssr153568 18 61484754 to 61484779 25 - TSS region transcription start site region 153568
Gm46637 18 61484766 to 61490132 5366 + protein coding gene predicted gene, 46637
Tssr153569 18 61484810 to 61484829 19 - TSS region transcription start site region 153569
Arhgef37 18 61493794 to 61536536 42742 - protein coding gene Rho guanine nucleotide exchange factor (GEF) 37
Cpgi10109 18 61505420 to 61505725 305 CpG island CpG island 10109
Tssr153570 18 61531995 to 61531996 1 - TSS region transcription start site region 153570
Cpgi10110 18 61536266 to 61536807 541 CpG island CpG island 10110
Tssr153571 18 61536522 to 61536558 36 - TSS region transcription start site region 153571
Tssr153572 18 61536570 to 61536583 13 - TSS region transcription start site region 153572
Tssr153573 18 61536786 to 61536805 19 - TSS region transcription start site region 153573
Tssr5347 18 61553582 to 61553585 3 + TSS region transcription start site region 5347
Cpgi10111 18 61554886 to 61556036 1150 CpG island CpG island 10111
Tssr153574 18 61555035 to 61555083 48 - TSS region transcription start site region 153574
Tssr151465 18 61555225 to 61555239 14 + TSS region transcription start site region 151465
Tssr151466 18 61555258 to 61555290 32 + TSS region transcription start site region 151466
Csnk1a1 18 61555274 to 61590061 34787 + protein coding gene casein kinase 1, alpha 1
Tssr151467 18 61555308 to 61555345 37 + TSS region transcription start site region 151467
Tssr151468 18 61555706 to 61555751 45 + TSS region transcription start site region 151468
Tssr151469 18 61555933 to 61556000 67 + TSS region transcription start site region 151469
Tssr151470 18 61566140 to 61566146 6 + TSS region transcription start site region 151470
Tssr151471 18 61568344 to 61568361 17 + TSS region transcription start site region 151471
Tssr153575 18 61575479 to 61575488 9 - TSS region transcription start site region 153575
Tssr151472 18 61576174 to 61576179 5 + TSS region transcription start site region 151472
Tssr151473 18 61587474 to 61587495 21 + TSS region transcription start site region 151473
Tssr151474 18 61587569 to 61587620 51 + TSS region transcription start site region 151474
Tssr151475 18 61589215 to 61589228 13 + TSS region transcription start site region 151475
C630007K24Rik 18 61591370 to 61593059 1689 unclassified gene RIKEN cDNA C630007K24 gene
Gm41747 18 61619900 to 61621042 1142 + lncRNA gene predicted gene, 41747
Tssr153576 18 61624060 to 61624094 34 - TSS region transcription start site region 153576
Tssr153577 18 61626434 to 61626445 11 - TSS region transcription start site region 153577
Gm35607 18 61628032 to 61642168 14136 - lncRNA gene predicted gene, 35607
Tssr153578 18 61628154 to 61628190 36 - TSS region transcription start site region 153578
Tssr151476 18 61628347 to 61628367 20 + TSS region transcription start site region 151476
Tssr153579 18 61632515 to 61632540 25 - TSS region transcription start site region 153579
Tssr153580 18 61632681 to 61632691 10 - TSS region transcription start site region 153580
Tssr151477 18 61632710 to 61632725 15 + TSS region transcription start site region 151477
Tssr151478 18 61632940 to 61632982 42 + TSS region transcription start site region 151478
Tssr153581 18 61635389 to 61635396 7 - TSS region transcription start site region 153581
Tssr151479 18 61639603 to 61639632 29 + TSS region transcription start site region 151479
Bvht 18 61639653 to 61647485 7832 + lincRNA gene braveheart long non-coding RNA
Tssr153582 18 61639874 to 61639885 11 - TSS region transcription start site region 153582
Tssr153583 18 61646316 to 61646321 5 - TSS region transcription start site region 153583
Tssr153584 18 61646667 to 61646673 6 - TSS region transcription start site region 153584
Cpgi10112 18 61647744 to 61648014 270 CpG island CpG island 10112
Tssr153585 18 61647824 to 61647828 4 - TSS region transcription start site region 153585
Mir145a 18 61647825 to 61647894 69 - miRNA gene microRNA 145a
Mirc32 18 61647825 to 61649258 1433 complex/cluster/region microRNA cluster 32, including Mir143 and Mir145a
Cpgi10113 18 61649120 to 61649331 211 CpG island CpG island 10113
Mir143 18 61649196 to 61649258 62 - miRNA gene microRNA 143
Carmn 18 61649625 to 61665537 15912 - lincRNA gene cardiac mesoderm enhancer-associated non-coding RNA
Tssr153586 18 61652357 to 61652373 16 - TSS region transcription start site region 153586
Tssr153587 18 61652386 to 61652397 11 - TSS region transcription start site region 153587
Tssr153588 18 61652419 to 61652440 21 - TSS region transcription start site region 153588
Tssr153589 18 61652449 to 61652464 15 - TSS region transcription start site region 153589