Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:61121502-61541515

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91 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
W3q15 18 5041119 to 61139571 56098452 QTL weight 3 weeks QTL 15
Csf1r 18 61105572 to 61132149 26577 + protein coding gene colony stimulating factor 1 receptor
Tssr151438 18 61121969 to 61121979 10 + TSS region transcription start site region 151438
Tssr151439 18 61122018 to 61122026 8 + TSS region transcription start site region 151439
Tssr151440 18 61124216 to 61124281 65 + TSS region transcription start site region 151440
Tssr151441 18 61127751 to 61127817 66 + TSS region transcription start site region 151441
Tssr151442 18 61127836 to 61127925 89 + TSS region transcription start site region 151442
Tssr151443 18 61128994 to 61129007 13 + TSS region transcription start site region 151443
Tssr151444 18 61129048 to 61129077 29 + TSS region transcription start site region 151444
Tssr151445 18 61129259 to 61129272 13 + TSS region transcription start site region 151445
Tssr151446 18 61129273 to 61129296 23 + TSS region transcription start site region 151446
Tssr151447 18 61129328 to 61129353 25 + TSS region transcription start site region 151447
Tssr151448 18 61129699 to 61129718 19 + TSS region transcription start site region 151448
Tssr151449 18 61130429 to 61130440 11 + TSS region transcription start site region 151449
Tssr151450 18 61130550 to 61130577 27 + TSS region transcription start site region 151450
Tssr151451 18 61130609 to 61130640 31 + TSS region transcription start site region 151451
Tssr151452 18 61130644 to 61130697 53 + TSS region transcription start site region 151452
Tssr151453 18 61130710 to 61130724 14 + TSS region transcription start site region 151453
Tssr151454 18 61130755 to 61130766 11 + TSS region transcription start site region 151454
Tssr151455 18 61130832 to 61130847 15 + TSS region transcription start site region 151455
Tssr153538 18 61130834 to 61130847 13 - TSS region transcription start site region 153538
Tssr151456 18 61130890 to 61130901 11 + TSS region transcription start site region 151456
Tssr151457 18 61130909 to 61130920 11 + TSS region transcription start site region 151457
Tssr151458 18 61130940 to 61130963 23 + TSS region transcription start site region 151458
Tssr151459 18 61131031 to 61131055 24 + TSS region transcription start site region 151459
Tssr153539 18 61131124 to 61131141 17 - TSS region transcription start site region 153539
Hmgxb3 18 61131279 to 61177050 45771 - protein coding gene HMG box domain containing 3
Gm26403 18 61138509 to 61138613 104 - snRNA gene predicted gene, 26403
sevr 18 61139376 to 63741971 2602595 heritable phenotypic marker severe runting
Orgwq9 18 61139376 to 82586603 21447227 QTL organ weight QTL 9
D18Mit51 18 61139376 to 61139571 195 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 51
Idd21.2 18 61139376 to 74429343 13289967 QTL insulin dependent diabetes susceptibility 21.2
W3q16 18 61139376 to 81448616 20309240 QTL weight 3 weeks QTL 16
Cpgi10105 18 61176367 to 61177605 1238 CpG island CpG island 10105
Tssr153540 18 61176976 to 61176987 11 - TSS region transcription start site region 153540
Tssr153541 18 61176994 to 61177057 63 - TSS region transcription start site region 153541
Tssr153542 18 61196198 to 61196231 33 - TSS region transcription start site region 153542
Tssr153543 18 61196364 to 61196398 34 - TSS region transcription start site region 153543
Tssr153544 18 61196546 to 61196557 11 - TSS region transcription start site region 153544
Slc26a2 18 61196854 to 61211596 14742 - protein coding gene solute carrier family 26 (sulfate transporter), member 2
Tssr153545 18 61197705 to 61197717 12 - TSS region transcription start site region 153545
Cpgi10106 18 61211053 to 61211920 867 CpG island CpG island 10106
Tssr153546 18 61211451 to 61211454 3 - TSS region transcription start site region 153546
Tssr153547 18 61211478 to 61211494 16 - TSS region transcription start site region 153547
Tssr153548 18 61211572 to 61211607 35 - TSS region transcription start site region 153548
Tssr153549 18 61211623 to 61211634 11 - TSS region transcription start site region 153549
Tssr151460 18 61220467 to 61220486 19 + TSS region transcription start site region 151460
Pde6a 18 61220499 to 61289750 69251 + protein coding gene phosphodiesterase 6A, cGMP-specific, rod, alpha
Tssr153550 18 61224330 to 61224336 6 - TSS region transcription start site region 153550
Tssr153551 18 61224342 to 61224357 15 - TSS region transcription start site region 153551
Tssr151461 18 61256794 to 61256800 6 + TSS region transcription start site region 151461
Cpgi10107 18 61256984 to 61257260 276 CpG island CpG island 10107
Rps2-ps10 18 61259039 to 61259987 948 - pseudogene ribosomal protein S2, pseudogene 10
Tssr153552 18 61259987 to 61259988 1 - TSS region transcription start site region 153552
Tssr151462 18 61275002 to 61275041 39 + TSS region transcription start site region 151462
Tssr153553 18 61289713 to 61289715 2 - TSS region transcription start site region 153553
Ppargc1b 18 61298136 to 61400431 102295 - protein coding gene peroxisome proliferative activated receptor, gamma, coactivator 1 beta
Gm46627 18 61298402 to 61302631 4229 + lncRNA gene predicted gene, 46627
Tssr5346 18 61315945 to 61315947 2 - TSS region transcription start site region 5346
Tssr153554 18 61331502 to 61331515 13 - TSS region transcription start site region 153554
Tssr153555 18 61353391 to 61353408 17 - TSS region transcription start site region 153555
Tssr153556 18 61375061 to 61375169 108 - TSS region transcription start site region 153556
Tssr153557 18 61375170 to 61375186 16 - TSS region transcription start site region 153557
Tssr153558 18 61375189 to 61375236 47 - TSS region transcription start site region 153558
Tssr153559 18 61375238 to 61375254 16 - TSS region transcription start site region 153559
Tssr153560 18 61375390 to 61375406 16 - TSS region transcription start site region 153560
Tssr153561 18 61375424 to 61375437 13 - TSS region transcription start site region 153561
Tssr153562 18 61375475 to 61375492 17 - TSS region transcription start site region 153562
Gm25301 18 61397813 to 61397925 112 + miRNA gene predicted gene, 25301
Mir378a 18 61397835 to 61397900 65 - miRNA gene microRNA 378a
Cpgi10108 18 61398327 to 61400923 2596 CpG island CpG island 10108
Tssr153563 18 61398980 to 61399031 51 - TSS region transcription start site region 153563
Tssr151463 18 61399169 to 61399195 26 + TSS region transcription start site region 151463
Tssr153564 18 61400363 to 61400449 86 - TSS region transcription start site region 153564
Tssr153565 18 61400463 to 61400470 7 - TSS region transcription start site region 153565
Gm8755 18 61433497 to 61434201 704 - pseudogene predicted gene 8755
Tssr151464 18 61448250 to 61448261 11 + TSS region transcription start site region 151464
Gm25834 18 61467053 to 61467153 100 - snRNA gene predicted gene, 25834
Lncbate10 18 61470225 to 61484607 14382 - lncRNA gene brown adipose tissue enriched long noncoding RNA 10
Tssr153566 18 61484572 to 61484575 3 - TSS region transcription start site region 153566
Tssr153567 18 61484600 to 61484613 13 - TSS region transcription start site region 153567
Tssr153568 18 61484754 to 61484779 25 - TSS region transcription start site region 153568
Gm46637 18 61484766 to 61490132 5366 + protein coding gene predicted gene, 46637
Tssr153569 18 61484810 to 61484829 19 - TSS region transcription start site region 153569
Arhgef37 18 61493794 to 61536536 42742 - protein coding gene Rho guanine nucleotide exchange factor (GEF) 37
Cpgi10109 18 61505420 to 61505725 305 CpG island CpG island 10109
Tssr153570 18 61531995 to 61531996 1 - TSS region transcription start site region 153570
Cpgi10110 18 61536266 to 61536807 541 CpG island CpG island 10110
Tssr153571 18 61536522 to 61536558 36 - TSS region transcription start site region 153571
Tssr153572 18 61536570 to 61536583 13 - TSS region transcription start site region 153572
Tssr153573 18 61536786 to 61536805 19 - TSS region transcription start site region 153573