Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:60838509-61438613

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198 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
W3q15 18 5041119 to 61139571 56098452 QTL weight 3 weeks QTL 15
Msmr2 18 54842801 to 61105798 6262997 QTL MSM lymphoma resistance 2
Tcof1 18 60813755 to 60848971 35216 - protein coding gene treacle ribosome biogenesis factor 1
Tssr153515 18 60844138 to 60844153 15 - TSS region transcription start site region 153515
Cpgi10097 18 60848318 to 60849102 784 CpG island CpG island 10097
Tssr153516 18 60848862 to 60848900 38 - TSS region transcription start site region 153516
Tssr153517 18 60848911 to 60848976 65 - TSS region transcription start site region 153517
Tssr153518 18 60848982 to 60848993 11 - TSS region transcription start site region 153518
Gm41744 18 60859208 to 60868826 9618 + lncRNA gene predicted gene, 41744
Tssr153519 18 60877328 to 60877337 9 - TSS region transcription start site region 153519
Gm41745 18 60883072 to 60888997 5925 - lncRNA gene predicted gene, 41745
Cpgi10098 18 60911604 to 60912676 1072 CpG island CpG island 10098
Tssr151362 18 60911727 to 60911755 28 + TSS region transcription start site region 151362
Tssr151363 18 60911757 to 60911779 22 + TSS region transcription start site region 151363
Arsi 18 60911780 to 60918561 6781 + protein coding gene arylsulfatase i
Tssr151364 18 60911805 to 60911847 42 + TSS region transcription start site region 151364
Tssr151365 18 60911955 to 60911973 18 + TSS region transcription start site region 151365
Tssr151366 18 60911984 to 60912002 18 + TSS region transcription start site region 151366
Tssr151367 18 60914623 to 60914632 9 + TSS region transcription start site region 151367
Cpgi10099 18 60925468 to 60925627 159 CpG island CpG island 10099
Tssr151368 18 60925612 to 60925639 27 + TSS region transcription start site region 151368
Camk2a 18 60925618 to 60988152 62534 + protein coding gene calcium/calmodulin-dependent protein kinase II alpha
Tssr151369 18 60925644 to 60925655 11 + TSS region transcription start site region 151369
Mir7220 18 60953873 to 60953932 59 + miRNA gene microRNA 7220
Mir6982 18 60958073 to 60958140 67 + miRNA gene microRNA 6982
Tssr151370 18 60963517 to 60963603 86 + TSS region transcription start site region 151370
Tssr151371 18 60963615 to 60963626 11 + TSS region transcription start site region 151371
Tssr151372 18 60963651 to 60963656 5 + TSS region transcription start site region 151372
Tssr151373 18 60963775 to 60963836 61 + TSS region transcription start site region 151373
Tssr151374 18 60963858 to 60963863 5 + TSS region transcription start site region 151374
Tssr151375 18 60969656 to 60969680 24 + TSS region transcription start site region 151375
Cpgi10100 18 60977757 to 60978181 424 CpG island CpG island 10100
Gm46632 18 60980161 to 60981366 1205 + lncRNA gene predicted gene, 46632
Tssr5345 18 60984134 to 60984143 9 + TSS region transcription start site region 5345
Cpgi10101 18 60984306 to 60984936 630 CpG island CpG island 10101
Tssr151376 18 60984309 to 60984332 23 + TSS region transcription start site region 151376
Tssr151377 18 60984388 to 60984400 12 + TSS region transcription start site region 151377
Tssr151378 18 60984437 to 60984451 14 + TSS region transcription start site region 151378
Tssr151379 18 60985670 to 60985682 12 + TSS region transcription start site region 151379
Tssr151380 18 60985742 to 60985753 11 + TSS region transcription start site region 151380
Tssr151381 18 60985776 to 60985785 9 + TSS region transcription start site region 151381
Tssr151382 18 60985880 to 60985897 17 + TSS region transcription start site region 151382
Tssr151383 18 60985916 to 60985927 11 + TSS region transcription start site region 151383
Tssr151384 18 60985962 to 60985969 7 + TSS region transcription start site region 151384
Tssr151385 18 60986002 to 60986019 17 + TSS region transcription start site region 151385
Tssr151386 18 60986062 to 60986071 9 + TSS region transcription start site region 151386
Tssr151387 18 60986102 to 60986110 8 + TSS region transcription start site region 151387
Tssr151388 18 60986119 to 60986134 15 + TSS region transcription start site region 151388
Tssr151389 18 60987529 to 60987548 19 + TSS region transcription start site region 151389
Tssr151390 18 60987746 to 60987785 39 + TSS region transcription start site region 151390
Tssr151391 18 60987934 to 60987937 3 + TSS region transcription start site region 151391
Slc6a7 18 60995381 to 61014199 18818 - protein coding gene solute carrier family 6 (neurotransmitter transporter, L-proline), member 7
Tssr153520 18 61008551 to 61008555 4 - TSS region transcription start site region 153520
Cpgi10102 18 61013616 to 61014503 887 CpG island CpG island 10102
Tssr153521 18 61014068 to 61014099 31 - TSS region transcription start site region 153521
Tssr153522 18 61014101 to 61014123 22 - TSS region transcription start site region 153522
Tssr153523 18 61014165 to 61014180 15 - TSS region transcription start site region 153523
Tssr153524 18 61014200 to 61014261 61 - TSS region transcription start site region 153524
Cdx1 18 61018862 to 61036199 17337 - protein coding gene caudal type homeobox 1
Cpgi10103 18 61035306 to 61036700 1394 CpG island CpG island 10103
Tssr153525 18 61035755 to 61035764 9 - TSS region transcription start site region 153525
Tssr153526 18 61035775 to 61035818 43 - TSS region transcription start site region 153526
Tssr153527 18 61036189 to 61036210 21 - TSS region transcription start site region 153527
Tssr153528 18 61036211 to 61036226 15 - TSS region transcription start site region 153528
Tssr153529 18 61039932 to 61039958 26 - TSS region transcription start site region 153529
Tssr151392 18 61045139 to 61045206 67 + TSS region transcription start site region 151392
Pdgfrb 18 61045150 to 61085061 39911 + protein coding gene platelet derived growth factor receptor, beta polypeptide
Tssr151393 18 61045239 to 61045248 9 + TSS region transcription start site region 151393
Tssr151394 18 61045270 to 61045281 11 + TSS region transcription start site region 151394
Tssr151395 18 61045303 to 61045313 10 + TSS region transcription start site region 151395
Tssr151396 18 61045422 to 61045442 20 + TSS region transcription start site region 151396
Tssr151397 18 61061256 to 61061258 2 + TSS region transcription start site region 151397
Tssr153530 18 61065429 to 61065437 8 - TSS region transcription start site region 153530
Tssr151398 18 61065681 to 61065728 47 + TSS region transcription start site region 151398
Cpgi10104 18 61065698 to 61065876 178 CpG island CpG island 10104
Tssr151399 18 61096641 to 61096664 23 + TSS region transcription start site region 151399
Tssr151400 18 61096671 to 61096695 24 + TSS region transcription start site region 151400
Tssr151401 18 61096699 to 61096718 19 + TSS region transcription start site region 151401
Tssr151402 18 61096787 to 61096800 13 + TSS region transcription start site region 151402
Tssr151403 18 61096811 to 61096818 7 + TSS region transcription start site region 151403
Tssr151404 18 61099476 to 61099490 14 + TSS region transcription start site region 151404
Tssr151405 18 61105527 to 61105546 19 + TSS region transcription start site region 151405
Tssr151406 18 61105561 to 61105579 18 + TSS region transcription start site region 151406
Csf1r 18 61105572 to 61132149 26577 + protein coding gene colony stimulating factor 1 receptor
Tssr151407 18 61105596 to 61105603 7 + TSS region transcription start site region 151407
Tssr151408 18 61105616 to 61105635 19 + TSS region transcription start site region 151408
Tssr151409 18 61105640 to 61105654 14 + TSS region transcription start site region 151409
Tssr151410 18 61105662 to 61105667 5 + TSS region transcription start site region 151410
D18Mit140 18 61105665 to 61105798 133 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 140
Tssr151411 18 61105817 to 61105828 11 + TSS region transcription start site region 151411
Tssr151412 18 61105844 to 61105890 46 + TSS region transcription start site region 151412
Tssr151413 18 61105905 to 61105910 5 + TSS region transcription start site region 151413
Tssr151414 18 61106041 to 61106052 11 + TSS region transcription start site region 151414
Tssr153531 18 61107007 to 61107015 8 - TSS region transcription start site region 153531
Tssr153532 18 61107647 to 61107698 51 - TSS region transcription start site region 153532
Tssr153533 18 61108561 to 61108592 31 - TSS region transcription start site region 153533
Tssr153534 18 61108593 to 61108630 37 - TSS region transcription start site region 153534
Tssr151415 18 61108861 to 61108872 11 + TSS region transcription start site region 151415
Tssr151416 18 61108892 to 61108933 41 + TSS region transcription start site region 151416
Tssr151417 18 61109622 to 61109626 4 + TSS region transcription start site region 151417
Tssr151418 18 61109635 to 61109642 7 + TSS region transcription start site region 151418
Tssr151419 18 61109665 to 61109678 13 + TSS region transcription start site region 151419
Tssr151420 18 61109710 to 61109733 23 + TSS region transcription start site region 151420
Tssr153535 18 61109714 to 61109725 11 - TSS region transcription start site region 153535
Tssr151421 18 61109736 to 61109759 23 + TSS region transcription start site region 151421
Tssr153536 18 61109740 to 61109796 56 - TSS region transcription start site region 153536
Tssr151422 18 61109761 to 61109770 9 + TSS region transcription start site region 151422
Tssr151423 18 61109802 to 61109813 11 + TSS region transcription start site region 151423
Tssr153537 18 61109816 to 61109839 23 - TSS region transcription start site region 153537
Tssr151424 18 61109840 to 61109851 11 + TSS region transcription start site region 151424
Tssr151425 18 61110339 to 61110484 145 + TSS region transcription start site region 151425
Tssr151426 18 61111254 to 61111270 16 + TSS region transcription start site region 151426
Tssr151427 18 61111945 to 61111983 38 + TSS region transcription start site region 151427
Tssr151428 18 61112010 to 61112055 45 + TSS region transcription start site region 151428
Tssr151429 18 61112692 to 61112719 27 + TSS region transcription start site region 151429
Tssr151430 18 61112749 to 61112771 22 + TSS region transcription start site region 151430
Tssr151431 18 61114787 to 61114874 87 + TSS region transcription start site region 151431
Tssr151432 18 61117060 to 61117111 51 + TSS region transcription start site region 151432
Tssr151433 18 61117283 to 61117292 9 + TSS region transcription start site region 151433
Mir6983 18 61117468 to 61117531 63 + miRNA gene microRNA 6983
Tssr151434 18 61117543 to 61117571 28 + TSS region transcription start site region 151434
Tssr151435 18 61117629 to 61117646 17 + TSS region transcription start site region 151435
Tssr151436 18 61117661 to 61117672 11 + TSS region transcription start site region 151436
Tssr151437 18 61118945 to 61119014 69 + TSS region transcription start site region 151437
Tssr151438 18 61121969 to 61121979 10 + TSS region transcription start site region 151438
Tssr151439 18 61122018 to 61122026 8 + TSS region transcription start site region 151439
Tssr151440 18 61124216 to 61124281 65 + TSS region transcription start site region 151440
Tssr151441 18 61127751 to 61127817 66 + TSS region transcription start site region 151441
Tssr151442 18 61127836 to 61127925 89 + TSS region transcription start site region 151442
Tssr151443 18 61128994 to 61129007 13 + TSS region transcription start site region 151443
Tssr151444 18 61129048 to 61129077 29 + TSS region transcription start site region 151444
Tssr151445 18 61129259 to 61129272 13 + TSS region transcription start site region 151445
Tssr151446 18 61129273 to 61129296 23 + TSS region transcription start site region 151446
Tssr151447 18 61129328 to 61129353 25 + TSS region transcription start site region 151447
Tssr151448 18 61129699 to 61129718 19 + TSS region transcription start site region 151448
Tssr151449 18 61130429 to 61130440 11 + TSS region transcription start site region 151449
Tssr151450 18 61130550 to 61130577 27 + TSS region transcription start site region 151450
Tssr151451 18 61130609 to 61130640 31 + TSS region transcription start site region 151451
Tssr151452 18 61130644 to 61130697 53 + TSS region transcription start site region 151452
Tssr151453 18 61130710 to 61130724 14 + TSS region transcription start site region 151453
Tssr151454 18 61130755 to 61130766 11 + TSS region transcription start site region 151454
Tssr151455 18 61130832 to 61130847 15 + TSS region transcription start site region 151455
Tssr153538 18 61130834 to 61130847 13 - TSS region transcription start site region 153538
Tssr151456 18 61130890 to 61130901 11 + TSS region transcription start site region 151456
Tssr151457 18 61130909 to 61130920 11 + TSS region transcription start site region 151457
Tssr151458 18 61130940 to 61130963 23 + TSS region transcription start site region 151458
Tssr151459 18 61131031 to 61131055 24 + TSS region transcription start site region 151459
Tssr153539 18 61131124 to 61131141 17 - TSS region transcription start site region 153539
Hmgxb3 18 61131279 to 61177050 45771 - protein coding gene HMG box domain containing 3
Gm26403 18 61138509 to 61138613 104 - snRNA gene predicted gene, 26403
D18Mit51 18 61139376 to 61139571 195 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 51
W3q16 18 61139376 to 81448616 20309240 QTL weight 3 weeks QTL 16
Idd21.2 18 61139376 to 74429343 13289967 QTL insulin dependent diabetes susceptibility 21.2
Orgwq9 18 61139376 to 82586603 21447227 QTL organ weight QTL 9
sevr 18 61139376 to 63741971 2602595 heritable phenotypic marker severe runting
Cpgi10105 18 61176367 to 61177605 1238 CpG island CpG island 10105
Tssr153540 18 61176976 to 61176987 11 - TSS region transcription start site region 153540
Tssr153541 18 61176994 to 61177057 63 - TSS region transcription start site region 153541
Tssr153542 18 61196198 to 61196231 33 - TSS region transcription start site region 153542
Tssr153543 18 61196364 to 61196398 34 - TSS region transcription start site region 153543
Tssr153544 18 61196546 to 61196557 11 - TSS region transcription start site region 153544
Slc26a2 18 61196854 to 61211596 14742 - protein coding gene solute carrier family 26 (sulfate transporter), member 2
Tssr153545 18 61197705 to 61197717 12 - TSS region transcription start site region 153545
Cpgi10106 18 61211053 to 61211920 867 CpG island CpG island 10106
Tssr153546 18 61211451 to 61211454 3 - TSS region transcription start site region 153546
Tssr153547 18 61211478 to 61211494 16 - TSS region transcription start site region 153547
Tssr153548 18 61211572 to 61211607 35 - TSS region transcription start site region 153548
Tssr153549 18 61211623 to 61211634 11 - TSS region transcription start site region 153549
Tssr151460 18 61220467 to 61220486 19 + TSS region transcription start site region 151460
Pde6a 18 61220499 to 61289750 69251 + protein coding gene phosphodiesterase 6A, cGMP-specific, rod, alpha
Tssr153550 18 61224330 to 61224336 6 - TSS region transcription start site region 153550
Tssr153551 18 61224342 to 61224357 15 - TSS region transcription start site region 153551
Tssr151461 18 61256794 to 61256800 6 + TSS region transcription start site region 151461
Cpgi10107 18 61256984 to 61257260 276 CpG island CpG island 10107
Rps2-ps10 18 61259039 to 61259987 948 - pseudogene ribosomal protein S2, pseudogene 10
Tssr153552 18 61259987 to 61259988 1 - TSS region transcription start site region 153552
Tssr151462 18 61275002 to 61275041 39 + TSS region transcription start site region 151462
Tssr153553 18 61289713 to 61289715 2 - TSS region transcription start site region 153553
Ppargc1b 18 61298136 to 61400431 102295 - protein coding gene peroxisome proliferative activated receptor, gamma, coactivator 1 beta
Gm46627 18 61298402 to 61302631 4229 + lncRNA gene predicted gene, 46627
Tssr5346 18 61315945 to 61315947 2 - TSS region transcription start site region 5346
Tssr153554 18 61331502 to 61331515 13 - TSS region transcription start site region 153554
Tssr153555 18 61353391 to 61353408 17 - TSS region transcription start site region 153555
Tssr153556 18 61375061 to 61375169 108 - TSS region transcription start site region 153556
Tssr153557 18 61375170 to 61375186 16 - TSS region transcription start site region 153557
Tssr153558 18 61375189 to 61375236 47 - TSS region transcription start site region 153558
Tssr153559 18 61375238 to 61375254 16 - TSS region transcription start site region 153559
Tssr153560 18 61375390 to 61375406 16 - TSS region transcription start site region 153560
Tssr153561 18 61375424 to 61375437 13 - TSS region transcription start site region 153561
Tssr153562 18 61375475 to 61375492 17 - TSS region transcription start site region 153562
Gm25301 18 61397813 to 61397925 112 + miRNA gene predicted gene, 25301
Mir378a 18 61397835 to 61397900 65 - miRNA gene microRNA 378a
Cpgi10108 18 61398327 to 61400923 2596 CpG island CpG island 10108
Tssr153563 18 61398980 to 61399031 51 - TSS region transcription start site region 153563
Tssr151463 18 61399169 to 61399195 26 + TSS region transcription start site region 151463
Tssr153564 18 61400363 to 61400449 86 - TSS region transcription start site region 153564
Tssr153565 18 61400463 to 61400470 7 - TSS region transcription start site region 153565
Gm8755 18 61433497 to 61434201 704 - pseudogene predicted gene 8755