Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:60826623-61596634

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230 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
W3q15 18 5041119 to 61139571 56098452 QTL weight 3 weeks QTL 15
Msmr2 18 54842801 to 61105798 6262997 QTL MSM lymphoma resistance 2
Tcof1 18 60813755 to 60848971 35216 - protein coding gene treacle ribosome biogenesis factor 1
Tssr153515 18 60844138 to 60844153 15 - TSS region transcription start site region 153515
Cpgi10097 18 60848318 to 60849102 784 CpG island CpG island 10097
Tssr153516 18 60848862 to 60848900 38 - TSS region transcription start site region 153516
Tssr153517 18 60848911 to 60848976 65 - TSS region transcription start site region 153517
Tssr153518 18 60848982 to 60848993 11 - TSS region transcription start site region 153518
Gm41744 18 60859208 to 60868826 9618 + lncRNA gene predicted gene, 41744
Tssr153519 18 60877328 to 60877337 9 - TSS region transcription start site region 153519
Gm41745 18 60883072 to 60888997 5925 - lncRNA gene predicted gene, 41745
Cpgi10098 18 60911604 to 60912676 1072 CpG island CpG island 10098
Tssr151362 18 60911727 to 60911755 28 + TSS region transcription start site region 151362
Tssr151363 18 60911757 to 60911779 22 + TSS region transcription start site region 151363
Arsi 18 60911780 to 60918561 6781 + protein coding gene arylsulfatase i
Tssr151364 18 60911805 to 60911847 42 + TSS region transcription start site region 151364
Tssr151365 18 60911955 to 60911973 18 + TSS region transcription start site region 151365
Tssr151366 18 60911984 to 60912002 18 + TSS region transcription start site region 151366
Tssr151367 18 60914623 to 60914632 9 + TSS region transcription start site region 151367
Cpgi10099 18 60925468 to 60925627 159 CpG island CpG island 10099
Tssr151368 18 60925612 to 60925639 27 + TSS region transcription start site region 151368
Camk2a 18 60925618 to 60988152 62534 + protein coding gene calcium/calmodulin-dependent protein kinase II alpha
Tssr151369 18 60925644 to 60925655 11 + TSS region transcription start site region 151369
Mir7220 18 60953873 to 60953932 59 + miRNA gene microRNA 7220
Mir6982 18 60958073 to 60958140 67 + miRNA gene microRNA 6982
Tssr151370 18 60963517 to 60963603 86 + TSS region transcription start site region 151370
Tssr151371 18 60963615 to 60963626 11 + TSS region transcription start site region 151371
Tssr151372 18 60963651 to 60963656 5 + TSS region transcription start site region 151372
Tssr151373 18 60963775 to 60963836 61 + TSS region transcription start site region 151373
Tssr151374 18 60963858 to 60963863 5 + TSS region transcription start site region 151374
Tssr151375 18 60969656 to 60969680 24 + TSS region transcription start site region 151375
Cpgi10100 18 60977757 to 60978181 424 CpG island CpG island 10100
Gm46632 18 60980161 to 60981366 1205 + lncRNA gene predicted gene, 46632
Tssr5345 18 60984134 to 60984143 9 + TSS region transcription start site region 5345
Cpgi10101 18 60984306 to 60984936 630 CpG island CpG island 10101
Tssr151376 18 60984309 to 60984332 23 + TSS region transcription start site region 151376
Tssr151377 18 60984388 to 60984400 12 + TSS region transcription start site region 151377
Tssr151378 18 60984437 to 60984451 14 + TSS region transcription start site region 151378
Tssr151379 18 60985670 to 60985682 12 + TSS region transcription start site region 151379
Tssr151380 18 60985742 to 60985753 11 + TSS region transcription start site region 151380
Tssr151381 18 60985776 to 60985785 9 + TSS region transcription start site region 151381
Tssr151382 18 60985880 to 60985897 17 + TSS region transcription start site region 151382
Tssr151383 18 60985916 to 60985927 11 + TSS region transcription start site region 151383
Tssr151384 18 60985962 to 60985969 7 + TSS region transcription start site region 151384
Tssr151385 18 60986002 to 60986019 17 + TSS region transcription start site region 151385
Tssr151386 18 60986062 to 60986071 9 + TSS region transcription start site region 151386
Tssr151387 18 60986102 to 60986110 8 + TSS region transcription start site region 151387
Tssr151388 18 60986119 to 60986134 15 + TSS region transcription start site region 151388
Tssr151389 18 60987529 to 60987548 19 + TSS region transcription start site region 151389
Tssr151390 18 60987746 to 60987785 39 + TSS region transcription start site region 151390
Tssr151391 18 60987934 to 60987937 3 + TSS region transcription start site region 151391
Slc6a7 18 60995381 to 61014199 18818 - protein coding gene solute carrier family 6 (neurotransmitter transporter, L-proline), member 7
Tssr153520 18 61008551 to 61008555 4 - TSS region transcription start site region 153520
Cpgi10102 18 61013616 to 61014503 887 CpG island CpG island 10102
Tssr153521 18 61014068 to 61014099 31 - TSS region transcription start site region 153521
Tssr153522 18 61014101 to 61014123 22 - TSS region transcription start site region 153522
Tssr153523 18 61014165 to 61014180 15 - TSS region transcription start site region 153523
Tssr153524 18 61014200 to 61014261 61 - TSS region transcription start site region 153524
Cdx1 18 61018862 to 61036199 17337 - protein coding gene caudal type homeobox 1
Cpgi10103 18 61035306 to 61036700 1394 CpG island CpG island 10103
Tssr153525 18 61035755 to 61035764 9 - TSS region transcription start site region 153525
Tssr153526 18 61035775 to 61035818 43 - TSS region transcription start site region 153526
Tssr153527 18 61036189 to 61036210 21 - TSS region transcription start site region 153527
Tssr153528 18 61036211 to 61036226 15 - TSS region transcription start site region 153528
Tssr153529 18 61039932 to 61039958 26 - TSS region transcription start site region 153529
Tssr151392 18 61045139 to 61045206 67 + TSS region transcription start site region 151392
Pdgfrb 18 61045150 to 61085061 39911 + protein coding gene platelet derived growth factor receptor, beta polypeptide
Tssr151393 18 61045239 to 61045248 9 + TSS region transcription start site region 151393
Tssr151394 18 61045270 to 61045281 11 + TSS region transcription start site region 151394
Tssr151395 18 61045303 to 61045313 10 + TSS region transcription start site region 151395
Tssr151396 18 61045422 to 61045442 20 + TSS region transcription start site region 151396
Tssr151397 18 61061256 to 61061258 2 + TSS region transcription start site region 151397
Tssr153530 18 61065429 to 61065437 8 - TSS region transcription start site region 153530
Tssr151398 18 61065681 to 61065728 47 + TSS region transcription start site region 151398
Cpgi10104 18 61065698 to 61065876 178 CpG island CpG island 10104
Tssr151399 18 61096641 to 61096664 23 + TSS region transcription start site region 151399
Tssr151400 18 61096671 to 61096695 24 + TSS region transcription start site region 151400
Tssr151401 18 61096699 to 61096718 19 + TSS region transcription start site region 151401
Tssr151402 18 61096787 to 61096800 13 + TSS region transcription start site region 151402
Tssr151403 18 61096811 to 61096818 7 + TSS region transcription start site region 151403
Tssr151404 18 61099476 to 61099490 14 + TSS region transcription start site region 151404
Tssr151405 18 61105527 to 61105546 19 + TSS region transcription start site region 151405
Tssr151406 18 61105561 to 61105579 18 + TSS region transcription start site region 151406
Csf1r 18 61105572 to 61132149 26577 + protein coding gene colony stimulating factor 1 receptor
Tssr151407 18 61105596 to 61105603 7 + TSS region transcription start site region 151407
Tssr151408 18 61105616 to 61105635 19 + TSS region transcription start site region 151408
Tssr151409 18 61105640 to 61105654 14 + TSS region transcription start site region 151409
Tssr151410 18 61105662 to 61105667 5 + TSS region transcription start site region 151410
D18Mit140 18 61105665 to 61105798 133 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 140
Tssr151411 18 61105817 to 61105828 11 + TSS region transcription start site region 151411
Tssr151412 18 61105844 to 61105890 46 + TSS region transcription start site region 151412
Tssr151413 18 61105905 to 61105910 5 + TSS region transcription start site region 151413
Tssr151414 18 61106041 to 61106052 11 + TSS region transcription start site region 151414
Tssr153531 18 61107007 to 61107015 8 - TSS region transcription start site region 153531
Tssr153532 18 61107647 to 61107698 51 - TSS region transcription start site region 153532
Tssr153533 18 61108561 to 61108592 31 - TSS region transcription start site region 153533
Tssr153534 18 61108593 to 61108630 37 - TSS region transcription start site region 153534
Tssr151415 18 61108861 to 61108872 11 + TSS region transcription start site region 151415
Tssr151416 18 61108892 to 61108933 41 + TSS region transcription start site region 151416
Tssr151417 18 61109622 to 61109626 4 + TSS region transcription start site region 151417
Tssr151418 18 61109635 to 61109642 7 + TSS region transcription start site region 151418
Tssr151419 18 61109665 to 61109678 13 + TSS region transcription start site region 151419
Tssr151420 18 61109710 to 61109733 23 + TSS region transcription start site region 151420
Tssr153535 18 61109714 to 61109725 11 - TSS region transcription start site region 153535
Tssr151421 18 61109736 to 61109759 23 + TSS region transcription start site region 151421
Tssr153536 18 61109740 to 61109796 56 - TSS region transcription start site region 153536
Tssr151422 18 61109761 to 61109770 9 + TSS region transcription start site region 151422
Tssr151423 18 61109802 to 61109813 11 + TSS region transcription start site region 151423
Tssr153537 18 61109816 to 61109839 23 - TSS region transcription start site region 153537
Tssr151424 18 61109840 to 61109851 11 + TSS region transcription start site region 151424
Tssr151425 18 61110339 to 61110484 145 + TSS region transcription start site region 151425
Tssr151426 18 61111254 to 61111270 16 + TSS region transcription start site region 151426
Tssr151427 18 61111945 to 61111983 38 + TSS region transcription start site region 151427
Tssr151428 18 61112010 to 61112055 45 + TSS region transcription start site region 151428
Tssr151429 18 61112692 to 61112719 27 + TSS region transcription start site region 151429
Tssr151430 18 61112749 to 61112771 22 + TSS region transcription start site region 151430
Tssr151431 18 61114787 to 61114874 87 + TSS region transcription start site region 151431
Tssr151432 18 61117060 to 61117111 51 + TSS region transcription start site region 151432
Tssr151433 18 61117283 to 61117292 9 + TSS region transcription start site region 151433
Mir6983 18 61117468 to 61117531 63 + miRNA gene microRNA 6983
Tssr151434 18 61117543 to 61117571 28 + TSS region transcription start site region 151434
Tssr151435 18 61117629 to 61117646 17 + TSS region transcription start site region 151435
Tssr151436 18 61117661 to 61117672 11 + TSS region transcription start site region 151436
Tssr151437 18 61118945 to 61119014 69 + TSS region transcription start site region 151437
Tssr151438 18 61121969 to 61121979 10 + TSS region transcription start site region 151438
Tssr151439 18 61122018 to 61122026 8 + TSS region transcription start site region 151439
Tssr151440 18 61124216 to 61124281 65 + TSS region transcription start site region 151440
Tssr151441 18 61127751 to 61127817 66 + TSS region transcription start site region 151441
Tssr151442 18 61127836 to 61127925 89 + TSS region transcription start site region 151442
Tssr151443 18 61128994 to 61129007 13 + TSS region transcription start site region 151443
Tssr151444 18 61129048 to 61129077 29 + TSS region transcription start site region 151444
Tssr151445 18 61129259 to 61129272 13 + TSS region transcription start site region 151445
Tssr151446 18 61129273 to 61129296 23 + TSS region transcription start site region 151446
Tssr151447 18 61129328 to 61129353 25 + TSS region transcription start site region 151447
Tssr151448 18 61129699 to 61129718 19 + TSS region transcription start site region 151448
Tssr151449 18 61130429 to 61130440 11 + TSS region transcription start site region 151449
Tssr151450 18 61130550 to 61130577 27 + TSS region transcription start site region 151450
Tssr151451 18 61130609 to 61130640 31 + TSS region transcription start site region 151451
Tssr151452 18 61130644 to 61130697 53 + TSS region transcription start site region 151452
Tssr151453 18 61130710 to 61130724 14 + TSS region transcription start site region 151453
Tssr151454 18 61130755 to 61130766 11 + TSS region transcription start site region 151454
Tssr151455 18 61130832 to 61130847 15 + TSS region transcription start site region 151455
Tssr153538 18 61130834 to 61130847 13 - TSS region transcription start site region 153538
Tssr151456 18 61130890 to 61130901 11 + TSS region transcription start site region 151456
Tssr151457 18 61130909 to 61130920 11 + TSS region transcription start site region 151457
Tssr151458 18 61130940 to 61130963 23 + TSS region transcription start site region 151458
Tssr151459 18 61131031 to 61131055 24 + TSS region transcription start site region 151459
Tssr153539 18 61131124 to 61131141 17 - TSS region transcription start site region 153539
Hmgxb3 18 61131279 to 61177050 45771 - protein coding gene HMG box domain containing 3
Gm26403 18 61138509 to 61138613 104 - snRNA gene predicted gene, 26403
sevr 18 61139376 to 63741971 2602595 heritable phenotypic marker severe runting
W3q16 18 61139376 to 81448616 20309240 QTL weight 3 weeks QTL 16
D18Mit51 18 61139376 to 61139571 195 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 51
Idd21.2 18 61139376 to 74429343 13289967 QTL insulin dependent diabetes susceptibility 21.2
Orgwq9 18 61139376 to 82586603 21447227 QTL organ weight QTL 9
Cpgi10105 18 61176367 to 61177605 1238 CpG island CpG island 10105
Tssr153540 18 61176976 to 61176987 11 - TSS region transcription start site region 153540
Tssr153541 18 61176994 to 61177057 63 - TSS region transcription start site region 153541
Tssr153542 18 61196198 to 61196231 33 - TSS region transcription start site region 153542
Tssr153543 18 61196364 to 61196398 34 - TSS region transcription start site region 153543
Tssr153544 18 61196546 to 61196557 11 - TSS region transcription start site region 153544
Slc26a2 18 61196854 to 61211596 14742 - protein coding gene solute carrier family 26 (sulfate transporter), member 2
Tssr153545 18 61197705 to 61197717 12 - TSS region transcription start site region 153545
Cpgi10106 18 61211053 to 61211920 867 CpG island CpG island 10106
Tssr153546 18 61211451 to 61211454 3 - TSS region transcription start site region 153546
Tssr153547 18 61211478 to 61211494 16 - TSS region transcription start site region 153547
Tssr153548 18 61211572 to 61211607 35 - TSS region transcription start site region 153548
Tssr153549 18 61211623 to 61211634 11 - TSS region transcription start site region 153549
Tssr151460 18 61220467 to 61220486 19 + TSS region transcription start site region 151460
Pde6a 18 61220499 to 61289750 69251 + protein coding gene phosphodiesterase 6A, cGMP-specific, rod, alpha
Tssr153550 18 61224330 to 61224336 6 - TSS region transcription start site region 153550
Tssr153551 18 61224342 to 61224357 15 - TSS region transcription start site region 153551
Tssr151461 18 61256794 to 61256800 6 + TSS region transcription start site region 151461
Cpgi10107 18 61256984 to 61257260 276 CpG island CpG island 10107
Rps2-ps10 18 61259039 to 61259987 948 - pseudogene ribosomal protein S2, pseudogene 10
Tssr153552 18 61259987 to 61259988 1 - TSS region transcription start site region 153552
Tssr151462 18 61275002 to 61275041 39 + TSS region transcription start site region 151462
Tssr153553 18 61289713 to 61289715 2 - TSS region transcription start site region 153553
Ppargc1b 18 61298136 to 61400431 102295 - protein coding gene peroxisome proliferative activated receptor, gamma, coactivator 1 beta
Gm46627 18 61298402 to 61302631 4229 + lncRNA gene predicted gene, 46627
Tssr5346 18 61315945 to 61315947 2 - TSS region transcription start site region 5346
Tssr153554 18 61331502 to 61331515 13 - TSS region transcription start site region 153554
Tssr153555 18 61353391 to 61353408 17 - TSS region transcription start site region 153555
Tssr153556 18 61375061 to 61375169 108 - TSS region transcription start site region 153556
Tssr153557 18 61375170 to 61375186 16 - TSS region transcription start site region 153557
Tssr153558 18 61375189 to 61375236 47 - TSS region transcription start site region 153558
Tssr153559 18 61375238 to 61375254 16 - TSS region transcription start site region 153559
Tssr153560 18 61375390 to 61375406 16 - TSS region transcription start site region 153560
Tssr153561 18 61375424 to 61375437 13 - TSS region transcription start site region 153561
Tssr153562 18 61375475 to 61375492 17 - TSS region transcription start site region 153562
Gm25301 18 61397813 to 61397925 112 + miRNA gene predicted gene, 25301
Mir378a 18 61397835 to 61397900 65 - miRNA gene microRNA 378a
Cpgi10108 18 61398327 to 61400923 2596 CpG island CpG island 10108
Tssr153563 18 61398980 to 61399031 51 - TSS region transcription start site region 153563
Tssr151463 18 61399169 to 61399195 26 + TSS region transcription start site region 151463
Tssr153564 18 61400363 to 61400449 86 - TSS region transcription start site region 153564
Tssr153565 18 61400463 to 61400470 7 - TSS region transcription start site region 153565
Gm8755 18 61433497 to 61434201 704 - pseudogene predicted gene 8755
Tssr151464 18 61448250 to 61448261 11 + TSS region transcription start site region 151464
Gm25834 18 61467053 to 61467153 100 - snRNA gene predicted gene, 25834