Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:60602495-61022504

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172 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Synpo 18 60593973 to 60660142 66169 - protein coding gene synaptopodin
Cpgi10093 18 60602348 to 60602742 394 CpG island CpG island 10093
Tssr153456 18 60610058 to 60610068 10 - TSS region transcription start site region 153456
Tssr153457 18 60610090 to 60610112 22 - TSS region transcription start site region 153457
Tssr153458 18 60613421 to 60613426 5 - TSS region transcription start site region 153458
Tssr153459 18 60613501 to 60613527 26 - TSS region transcription start site region 153459
Tssr153460 18 60613530 to 60613558 28 - TSS region transcription start site region 153460
Tssr153461 18 60621991 to 60622005 14 - TSS region transcription start site region 153461
Cpgi10094 18 60623611 to 60624685 1074 CpG island CpG island 10094
Tssr153462 18 60624201 to 60624247 46 - TSS region transcription start site region 153462
Tssr153463 18 60624294 to 60624303 9 - TSS region transcription start site region 153463
Tssr153464 18 60624304 to 60624351 47 - TSS region transcription start site region 153464
Tssr151320 18 60636169 to 60636174 5 + TSS region transcription start site region 151320
Tssr151321 18 60638554 to 60638567 13 + TSS region transcription start site region 151321
Tssr153465 18 60648264 to 60648289 25 - TSS region transcription start site region 153465
Tssr153466 18 60648290 to 60648325 35 - TSS region transcription start site region 153466
Tssr153467 18 60648927 to 60648944 17 - TSS region transcription start site region 153467
Tssr153468 18 60648946 to 60648969 23 - TSS region transcription start site region 153468
Tssr153469 18 60649010 to 60649023 13 - TSS region transcription start site region 153469
Tssr153470 18 60649024 to 60649037 13 - TSS region transcription start site region 153470
Tssr153471 18 60653191 to 60653204 13 - TSS region transcription start site region 153471
Tssr153472 18 60660135 to 60660172 37 - TSS region transcription start site region 153472
Tssr153473 18 60660186 to 60660201 15 - TSS region transcription start site region 153473
Tssr153474 18 60660205 to 60660231 26 - TSS region transcription start site region 153474
G630071F17Rik 18 60663410 to 60671624 8214 + lncRNA gene RIKEN cDNA G630071F17 gene
Ndst1 18 60685978 to 60713389 27411 - protein coding gene N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
Tssr153475 18 60691731 to 60691762 31 - TSS region transcription start site region 153475
Tssr153476 18 60718683 to 60718687 4 - TSS region transcription start site region 153476
Tssr153477 18 60718688 to 60718706 18 - TSS region transcription start site region 153477
Tssr153478 18 60718716 to 60718726 10 - TSS region transcription start site region 153478
Tssr153479 18 60723698 to 60723714 16 - TSS region transcription start site region 153479
Tssr153480 18 60723718 to 60723731 13 - TSS region transcription start site region 153480
Tssr153481 18 60727522 to 60727572 50 - TSS region transcription start site region 153481
Tssr153482 18 60733114 to 60733157 43 - TSS region transcription start site region 153482
Tssr153483 18 60733459 to 60733481 22 - TSS region transcription start site region 153483
Tssr153484 18 60733484 to 60733503 19 - TSS region transcription start site region 153484
Tssr153485 18 60744672 to 60744683 11 - TSS region transcription start site region 153485
Tssr153486 18 60747003 to 60747019 16 - TSS region transcription start site region 153486
Tssr151322 18 60747079 to 60747139 60 + TSS region transcription start site region 151322
Cpgi10095 18 60747547 to 60749154 1607 CpG island CpG island 10095
Tssr153487 18 60748333 to 60748410 77 - TSS region transcription start site region 153487
Tssr153488 18 60748608 to 60748694 86 - TSS region transcription start site region 153488
Tssr153489 18 60749008 to 60749021 13 - TSS region transcription start site region 153489
Cpgi10096 18 60774212 to 60775352 1140 CpG island CpG island 10096
Rps14 18 60774596 to 60778546 3950 + protein coding gene ribosomal protein S14
Tssr151323 18 60774614 to 60774625 11 + TSS region transcription start site region 151323
Tssr151324 18 60774626 to 60774663 37 + TSS region transcription start site region 151324
Tssr151325 18 60774675 to 60774686 11 + TSS region transcription start site region 151325
Gm8731 18 60778983 to 60779394 411 - pseudogene predicted gene 8731
Tssr153490 18 60779449 to 60779452 3 - TSS region transcription start site region 153490
Tssr153491 18 60793792 to 60793825 33 - TSS region transcription start site region 153491
Tssr151326 18 60803838 to 60803856 18 + TSS region transcription start site region 151326
Cd74 18 60803848 to 60812646 8798 + protein coding gene CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)
Tssr151327 18 60803857 to 60803868 11 + TSS region transcription start site region 151327
D18Mit77 18 60803958 to 60804241 283 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 77
Tssr153492 18 60804002 to 60804014 12 - TSS region transcription start site region 153492
Tssr151328 18 60805006 to 60805017 11 + TSS region transcription start site region 151328
Tssr151329 18 60805078 to 60805088 10 + TSS region transcription start site region 151329
Tssr151330 18 60805942 to 60805968 26 + TSS region transcription start site region 151330
Tssr151331 18 60805978 to 60805987 9 + TSS region transcription start site region 151331
Tssr151332 18 60806997 to 60807024 27 + TSS region transcription start site region 151332
Tssr151333 18 60807535 to 60807578 43 + TSS region transcription start site region 151333
Tssr5344 18 60807671 to 60807684 13 + TSS region transcription start site region 5344
Tssr151334 18 60807899 to 60807908 9 + TSS region transcription start site region 151334
Tssr151335 18 60807908 to 60807924 16 + TSS region transcription start site region 151335
Tssr151336 18 60807942 to 60807991 49 + TSS region transcription start site region 151336
Tssr151337 18 60807996 to 60808040 44 + TSS region transcription start site region 151337
Tssr151338 18 60808052 to 60808057 5 + TSS region transcription start site region 151338
Tssr153493 18 60808055 to 60808065 10 - TSS region transcription start site region 153493
Tssr153494 18 60808077 to 60808084 7 - TSS region transcription start site region 153494
Tssr151339 18 60808231 to 60808286 55 + TSS region transcription start site region 151339
Tssr153495 18 60808293 to 60808316 23 - TSS region transcription start site region 153495
D18Mit78 18 60808675 to 60808809 134 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 78
Tssr151340 18 60808907 to 60808920 13 + TSS region transcription start site region 151340
Tssr151341 18 60808930 to 60808955 25 + TSS region transcription start site region 151341
Tssr151342 18 60808962 to 60808981 19 + TSS region transcription start site region 151342
Tssr151343 18 60809022 to 60809066 44 + TSS region transcription start site region 151343
Tssr151344 18 60809972 to 60810023 51 + TSS region transcription start site region 151344
Tssr153496 18 60810001 to 60810024 23 - TSS region transcription start site region 153496
Tssr153497 18 60810031 to 60810074 43 - TSS region transcription start site region 153497
Tssr151345 18 60810311 to 60810376 65 + TSS region transcription start site region 151345
Tssr153498 18 60810354 to 60810410 56 - TSS region transcription start site region 153498
Tssr151346 18 60810383 to 60810395 12 + TSS region transcription start site region 151346
Tssr151347 18 60811306 to 60811357 51 + TSS region transcription start site region 151347
Tssr153499 18 60811316 to 60811359 43 - TSS region transcription start site region 153499
Tssr151348 18 60811398 to 60811410 12 + TSS region transcription start site region 151348
Tssr151349 18 60811418 to 60811452 34 + TSS region transcription start site region 151349
Tssr151350 18 60811844 to 60811899 55 + TSS region transcription start site region 151350
Tssr153500 18 60811882 to 60811917 35 - TSS region transcription start site region 153500
Mir5107 18 60812076 to 60812163 87 + miRNA gene microRNA 5107
Tssr151351 18 60812167 to 60812178 11 + TSS region transcription start site region 151351
Tssr151352 18 60812181 to 60812261 80 + TSS region transcription start site region 151352
Tssr153501 18 60812222 to 60812231 9 - TSS region transcription start site region 153501
Tssr153502 18 60812239 to 60812262 23 - TSS region transcription start site region 153502
Tssr151353 18 60812268 to 60812277 9 + TSS region transcription start site region 151353
Tssr153503 18 60812270 to 60812299 29 - TSS region transcription start site region 153503
Tssr153504 18 60812326 to 60812347 21 - TSS region transcription start site region 153504
Tssr151354 18 60812340 to 60812353 13 + TSS region transcription start site region 151354
Tssr153505 18 60812348 to 60812355 7 - TSS region transcription start site region 153505
Tssr151355 18 60812367 to 60812378 11 + TSS region transcription start site region 151355
Tssr151356 18 60812390 to 60812391 1 + TSS region transcription start site region 151356
Tssr151357 18 60812407 to 60812418 11 + TSS region transcription start site region 151357
Tssr153506 18 60812419 to 60812422 3 - TSS region transcription start site region 153506
Tssr151358 18 60812435 to 60812458 23 + TSS region transcription start site region 151358
Tssr153507 18 60812472 to 60812490 18 - TSS region transcription start site region 153507
Tssr153508 18 60812495 to 60812529 34 - TSS region transcription start site region 153508
Tssr151359 18 60812495 to 60812504 9 + TSS region transcription start site region 151359
Tssr151360 18 60812509 to 60812520 11 + TSS region transcription start site region 151360
Tssr153509 18 60812535 to 60812562 27 - TSS region transcription start site region 153509
Tssr151361 18 60812557 to 60812566 9 + TSS region transcription start site region 151361
Tssr153510 18 60812596 to 60812605 9 - TSS region transcription start site region 153510
Tssr153511 18 60812641 to 60812649 8 - TSS region transcription start site region 153511
Tcof1 18 60813755 to 60848971 35216 - protein coding gene treacle ribosome biogenesis factor 1
Tssr153512 18 60817166 to 60817170 4 - TSS region transcription start site region 153512
Tssr153513 18 60822951 to 60822962 11 - TSS region transcription start site region 153513
Tssr153514 18 60822981 to 60822992 11 - TSS region transcription start site region 153514
Tssr153515 18 60844138 to 60844153 15 - TSS region transcription start site region 153515
Cpgi10097 18 60848318 to 60849102 784 CpG island CpG island 10097
Tssr153516 18 60848862 to 60848900 38 - TSS region transcription start site region 153516
Tssr153517 18 60848911 to 60848976 65 - TSS region transcription start site region 153517
Tssr153518 18 60848982 to 60848993 11 - TSS region transcription start site region 153518
Gm41744 18 60859208 to 60868826 9618 + lncRNA gene predicted gene, 41744
Tssr153519 18 60877328 to 60877337 9 - TSS region transcription start site region 153519
Gm41745 18 60883072 to 60888997 5925 - lncRNA gene predicted gene, 41745
Cpgi10098 18 60911604 to 60912676 1072 CpG island CpG island 10098
Tssr151362 18 60911727 to 60911755 28 + TSS region transcription start site region 151362
Tssr151363 18 60911757 to 60911779 22 + TSS region transcription start site region 151363
Arsi 18 60911780 to 60918561 6781 + protein coding gene arylsulfatase i
Tssr151364 18 60911805 to 60911847 42 + TSS region transcription start site region 151364
Tssr151365 18 60911955 to 60911973 18 + TSS region transcription start site region 151365
Tssr151366 18 60911984 to 60912002 18 + TSS region transcription start site region 151366
Tssr151367 18 60914623 to 60914632 9 + TSS region transcription start site region 151367
Cpgi10099 18 60925468 to 60925627 159 CpG island CpG island 10099
Tssr151368 18 60925612 to 60925639 27 + TSS region transcription start site region 151368
Camk2a 18 60925618 to 60988152 62534 + protein coding gene calcium/calmodulin-dependent protein kinase II alpha
Tssr151369 18 60925644 to 60925655 11 + TSS region transcription start site region 151369
Mir7220 18 60953873 to 60953932 59 + miRNA gene microRNA 7220
Mir6982 18 60958073 to 60958140 67 + miRNA gene microRNA 6982
Tssr151370 18 60963517 to 60963603 86 + TSS region transcription start site region 151370
Tssr151371 18 60963615 to 60963626 11 + TSS region transcription start site region 151371
Tssr151372 18 60963651 to 60963656 5 + TSS region transcription start site region 151372
Tssr151373 18 60963775 to 60963836 61 + TSS region transcription start site region 151373
Tssr151374 18 60963858 to 60963863 5 + TSS region transcription start site region 151374
Tssr151375 18 60969656 to 60969680 24 + TSS region transcription start site region 151375
Cpgi10100 18 60977757 to 60978181 424 CpG island CpG island 10100
Gm46632 18 60980161 to 60981366 1205 + lncRNA gene predicted gene, 46632
Tssr5345 18 60984134 to 60984143 9 + TSS region transcription start site region 5345
Cpgi10101 18 60984306 to 60984936 630 CpG island CpG island 10101
Tssr151376 18 60984309 to 60984332 23 + TSS region transcription start site region 151376
Tssr151377 18 60984388 to 60984400 12 + TSS region transcription start site region 151377
Tssr151378 18 60984437 to 60984451 14 + TSS region transcription start site region 151378
Tssr151379 18 60985670 to 60985682 12 + TSS region transcription start site region 151379
Tssr151380 18 60985742 to 60985753 11 + TSS region transcription start site region 151380
Tssr151381 18 60985776 to 60985785 9 + TSS region transcription start site region 151381
Tssr151382 18 60985880 to 60985897 17 + TSS region transcription start site region 151382
Tssr151383 18 60985916 to 60985927 11 + TSS region transcription start site region 151383
Tssr151384 18 60985962 to 60985969 7 + TSS region transcription start site region 151384
Tssr151385 18 60986002 to 60986019 17 + TSS region transcription start site region 151385
Tssr151386 18 60986062 to 60986071 9 + TSS region transcription start site region 151386
Tssr151387 18 60986102 to 60986110 8 + TSS region transcription start site region 151387
Tssr151388 18 60986119 to 60986134 15 + TSS region transcription start site region 151388
Tssr151389 18 60987529 to 60987548 19 + TSS region transcription start site region 151389
Tssr151390 18 60987746 to 60987785 39 + TSS region transcription start site region 151390
Tssr151391 18 60987934 to 60987937 3 + TSS region transcription start site region 151391
Slc6a7 18 60995381 to 61014199 18818 - protein coding gene solute carrier family 6 (neurotransmitter transporter, L-proline), member 7
Tssr153520 18 61008551 to 61008555 4 - TSS region transcription start site region 153520
Cpgi10102 18 61013616 to 61014503 887 CpG island CpG island 10102
Tssr153521 18 61014068 to 61014099 31 - TSS region transcription start site region 153521
Tssr153522 18 61014101 to 61014123 22 - TSS region transcription start site region 153522
Tssr153523 18 61014165 to 61014180 15 - TSS region transcription start site region 153523
Tssr153524 18 61014200 to 61014261 61 - TSS region transcription start site region 153524
Cdx1 18 61018862 to 61036199 17337 - protein coding gene caudal type homeobox 1