Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:60493946-60803969

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88 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Smim3 18 60474193 to 60501983 27790 - protein coding gene small integral membrane protein 3
Tssr153441 18 60499419 to 60499430 11 - TSS region transcription start site region 153441
Tssr151312 18 60500258 to 60500280 22 + TSS region transcription start site region 151312
Cpgi10089 18 60501032 to 60501818 786 CpG island CpG island 10089
Tssr153442 18 60501515 to 60501620 105 - TSS region transcription start site region 153442
Tssr153443 18 60501631 to 60501646 15 - TSS region transcription start site region 153443
Tssr153444 18 60501667 to 60501677 10 - TSS region transcription start site region 153444
Tssr153445 18 60501693 to 60501745 52 - TSS region transcription start site region 153445
Tssr153446 18 60501748 to 60501772 24 - TSS region transcription start site region 153446
Tssr153447 18 60502464 to 60502477 13 - TSS region transcription start site region 153447
Gm46628 18 60504115 to 60508089 3974 + lncRNA gene predicted gene, 46628
Cpgi10090 18 60525903 to 60526721 818 CpG island CpG island 10090
Tssr153448 18 60525976 to 60525986 10 - TSS region transcription start site region 153448
Tssr153449 18 60526043 to 60526079 36 - TSS region transcription start site region 153449
Tssr153450 18 60526086 to 60526103 17 - TSS region transcription start site region 153450
Dctn4 18 60526185 to 60558766 32581 + protein coding gene dynactin 4
Tssr151313 18 60526194 to 60526234 40 + TSS region transcription start site region 151313
Tssr151314 18 60556413 to 60556455 42 + TSS region transcription start site region 151314
Tssr151315 18 60557738 to 60557759 21 + TSS region transcription start site region 151315
Tssr151316 18 60558192 to 60558197 5 + TSS region transcription start site region 151316
Cpgi10091 18 60560496 to 60561258 762 CpG island CpG island 10091
Tssr151317 18 60560730 to 60560796 66 + TSS region transcription start site region 151317
Rbm22 18 60560786 to 60572729 11943 + protein coding gene RNA binding motif protein 22
Tssr151318 18 60560814 to 60560818 4 + TSS region transcription start site region 151318
Tssr151319 18 60566452 to 60566467 15 + TSS region transcription start site region 151319
Myoz3 18 60576316 to 60591788 15472 - protein coding gene myozenin 3
Tssr5343 18 60584708 to 60584711 3 - TSS region transcription start site region 5343
Tssr153451 18 60591763 to 60591778 15 - TSS region transcription start site region 153451
Tssr153452 18 60591783 to 60591867 84 - TSS region transcription start site region 153452
Tssr153453 18 60591883 to 60591900 17 - TSS region transcription start site region 153453
Synpo 18 60593973 to 60660142 66169 - protein coding gene synaptopodin
Cpgi10092 18 60595542 to 60596625 1083 CpG island CpG island 10092
Tssr153454 18 60596766 to 60596768 2 - TSS region transcription start site region 153454
Tssr153455 18 60600436 to 60600461 25 - TSS region transcription start site region 153455
Cpgi10093 18 60602348 to 60602742 394 CpG island CpG island 10093
Tssr153456 18 60610058 to 60610068 10 - TSS region transcription start site region 153456
Tssr153457 18 60610090 to 60610112 22 - TSS region transcription start site region 153457
Tssr153458 18 60613421 to 60613426 5 - TSS region transcription start site region 153458
Tssr153459 18 60613501 to 60613527 26 - TSS region transcription start site region 153459
Tssr153460 18 60613530 to 60613558 28 - TSS region transcription start site region 153460
Tssr153461 18 60621991 to 60622005 14 - TSS region transcription start site region 153461
Cpgi10094 18 60623611 to 60624685 1074 CpG island CpG island 10094
Tssr153462 18 60624201 to 60624247 46 - TSS region transcription start site region 153462
Tssr153463 18 60624294 to 60624303 9 - TSS region transcription start site region 153463
Tssr153464 18 60624304 to 60624351 47 - TSS region transcription start site region 153464
Tssr151320 18 60636169 to 60636174 5 + TSS region transcription start site region 151320
Tssr151321 18 60638554 to 60638567 13 + TSS region transcription start site region 151321
Tssr153465 18 60648264 to 60648289 25 - TSS region transcription start site region 153465
Tssr153466 18 60648290 to 60648325 35 - TSS region transcription start site region 153466
Tssr153467 18 60648927 to 60648944 17 - TSS region transcription start site region 153467
Tssr153468 18 60648946 to 60648969 23 - TSS region transcription start site region 153468
Tssr153469 18 60649010 to 60649023 13 - TSS region transcription start site region 153469
Tssr153470 18 60649024 to 60649037 13 - TSS region transcription start site region 153470
Tssr153471 18 60653191 to 60653204 13 - TSS region transcription start site region 153471
Tssr153472 18 60660135 to 60660172 37 - TSS region transcription start site region 153472
Tssr153473 18 60660186 to 60660201 15 - TSS region transcription start site region 153473
Tssr153474 18 60660205 to 60660231 26 - TSS region transcription start site region 153474
G630071F17Rik 18 60663410 to 60671624 8214 + lncRNA gene RIKEN cDNA G630071F17 gene
Ndst1 18 60685978 to 60713389 27411 - protein coding gene N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
Tssr153475 18 60691731 to 60691762 31 - TSS region transcription start site region 153475
Tssr153476 18 60718683 to 60718687 4 - TSS region transcription start site region 153476
Tssr153477 18 60718688 to 60718706 18 - TSS region transcription start site region 153477
Tssr153478 18 60718716 to 60718726 10 - TSS region transcription start site region 153478
Tssr153479 18 60723698 to 60723714 16 - TSS region transcription start site region 153479
Tssr153480 18 60723718 to 60723731 13 - TSS region transcription start site region 153480
Tssr153481 18 60727522 to 60727572 50 - TSS region transcription start site region 153481
Tssr153482 18 60733114 to 60733157 43 - TSS region transcription start site region 153482
Tssr153483 18 60733459 to 60733481 22 - TSS region transcription start site region 153483
Tssr153484 18 60733484 to 60733503 19 - TSS region transcription start site region 153484
Tssr153485 18 60744672 to 60744683 11 - TSS region transcription start site region 153485
Tssr153486 18 60747003 to 60747019 16 - TSS region transcription start site region 153486
Tssr151322 18 60747079 to 60747139 60 + TSS region transcription start site region 151322
Cpgi10095 18 60747547 to 60749154 1607 CpG island CpG island 10095
Tssr153487 18 60748333 to 60748410 77 - TSS region transcription start site region 153487
Tssr153488 18 60748608 to 60748694 86 - TSS region transcription start site region 153488
Tssr153489 18 60749008 to 60749021 13 - TSS region transcription start site region 153489
Cpgi10096 18 60774212 to 60775352 1140 CpG island CpG island 10096
Rps14 18 60774596 to 60778546 3950 + protein coding gene ribosomal protein S14
Tssr151323 18 60774614 to 60774625 11 + TSS region transcription start site region 151323
Tssr151324 18 60774626 to 60774663 37 + TSS region transcription start site region 151324
Tssr151325 18 60774675 to 60774686 11 + TSS region transcription start site region 151325
Gm8731 18 60778983 to 60779394 411 - pseudogene predicted gene 8731
Tssr153490 18 60779449 to 60779452 3 - TSS region transcription start site region 153490
Tssr153491 18 60793792 to 60793825 33 - TSS region transcription start site region 153491
Tssr151326 18 60803838 to 60803856 18 + TSS region transcription start site region 151326
Cd74 18 60803848 to 60812646 8798 + protein coding gene CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)
Tssr151327 18 60803857 to 60803868 11 + TSS region transcription start site region 151327
D18Mit77 18 60803958 to 60804241 283 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 77