Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:57466593-63316604

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771 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
W3q15 18 5041119 to 61139571 56098452 QTL weight 3 weeks QTL 15
Msmr2 18 54842801 to 61105798 6262997 QTL MSM lymphoma resistance 2
Tssr151199 18 57468470 to 57468477 7 + TSS region transcription start site region 151199
Tssr151200 18 57468478 to 57468541 63 + TSS region transcription start site region 151200
Ctxn3 18 57468516 to 57478133 9617 + protein coding gene cortexin 3
Tssr151201 18 57468547 to 57468560 13 + TSS region transcription start site region 151201
Tssr151202 18 57468669 to 57468691 22 + TSS region transcription start site region 151202
Tssr5330 18 57468696 to 57468716 20 + TSS region transcription start site region 5330
Tssr151203 18 57468721 to 57468730 9 + TSS region transcription start site region 151203
Tssr151204 18 57472463 to 57472480 17 + TSS region transcription start site region 151204
1700066O22Rik 18 57504422 to 57533752 29330 - lncRNA gene RIKEN cDNA 1700066O22 gene
Tssr153410 18 57533715 to 57533720 5 - TSS region transcription start site region 153410
Tssr153411 18 57533749 to 57533761 12 - TSS region transcription start site region 153411
Ccdc192 18 57533780 to 57731065 197285 + protein coding gene coiled-coil domain containing 192
Tssr151205 18 57533842 to 57533866 24 + TSS region transcription start site region 151205
4930511M06Rik 18 57545361 to 57552397 7036 - lncRNA gene RIKEN cDNA 4930511M06 gene
Tssr153412 18 57551873 to 57551905 32 - TSS region transcription start site region 153412
Tssr153413 18 57552337 to 57552348 11 - TSS region transcription start site region 153413
Tssr153414 18 57552368 to 57552415 47 - TSS region transcription start site region 153414
Gm18740 18 57588008 to 57588811 803 - pseudogene predicted gene, 18740
Tssr5331 18 57615569 to 57615571 2 + TSS region transcription start site region 5331
2210409D07Rik 18 57632079 to 57638585 6506 - lncRNA gene RIKEN cDNA 2210409D07 gene
Tssr151206 18 57658038 to 57658041 3 + TSS region transcription start site region 151206
Gm26038 18 57669453 to 57669558 105 - snRNA gene predicted gene, 26038
Gm44491 18 57681814 to 57681909 95 + miRNA gene predicted gene, 44491
Gm19519 18 57774166 to 57779995 5829 - unclassified gene predicted gene, 19519
Gm35751 18 57803013 to 57828506 25493 + protein coding gene predicted gene, 35751
9330166H04Rik 18 57877714 to 57878511 797 unclassified non-coding RNA gene RIKEN cDNA 9330166H04 gene
Cpgi10080 18 57877727 to 57879761 2034 CpG island CpG island 10080
Tssr5332 18 57878291 to 57878309 18 + TSS region transcription start site region 5332
Tssr151207 18 57878596 to 57878607 11 + TSS region transcription start site region 151207
Tssr151208 18 57878620 to 57878637 17 + TSS region transcription start site region 151208
Slc12a2 18 57878678 to 57946821 68143 + protein coding gene solute carrier family 12, member 2
Pwgrq8 18 57888327 to 69216071 11327744 QTL pre-weaning growth rate QTL 8
Tssr5333 18 57911998 to 57912018 20 + TSS region transcription start site region 5333
2210411G17Rik 18 57949906 to 57952095 2189 unclassified gene RIKEN cDNA 2210411G17 gene
2210409O19Rik 18 57954242 to 57955291 1049 unclassified gene RIKEN cDNA 2210409O19 gene
D18Mit181 18 57994795 to 57994941 146 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 181
Fbn2 18 58008623 to 58209926 201303 - protein coding gene fibrillin 2
Tssr5334 18 58009104 to 58009108 4 - TSS region transcription start site region 5334
Tssr153415 18 58009135 to 58009144 9 - TSS region transcription start site region 153415
Tssr153416 18 58072810 to 58072824 14 - TSS region transcription start site region 153416
Tssr153417 18 58072844 to 58072852 8 - TSS region transcription start site region 153417
Tssr153418 18 58072868 to 58072875 7 - TSS region transcription start site region 153418
5930427J20Rik 18 58091069 to 58092484 1415 unclassified gene RIKEN cDNA 5930427J20 gene
Tssr153419 18 58097058 to 58097061 3 - TSS region transcription start site region 153419
Tssr151209 18 58146367 to 58146368 1 + TSS region transcription start site region 151209
Tssr153420 18 58168355 to 58168360 5 - TSS region transcription start site region 153420
D330023I04Rik 18 58204138 to 58207794 3656 unclassified gene RIKEN cDNA D330023I04 gene
Cpgi10081 18 58209046 to 58211276 2230 CpG island CpG island 10081
Tssr153421 18 58209133 to 58209148 15 - TSS region transcription start site region 153421
Tssr5335 18 58209959 to 58209982 23 - TSS region transcription start site region 5335
Tssr153422 18 58210056 to 58210067 11 - TSS region transcription start site region 153422
Tssr5336 18 58210092 to 58210109 17 - TSS region transcription start site region 5336
Tssr5337 18 58210267 to 58210269 2 - TSS region transcription start site region 5337
Gm41741 18 58210295 to 58215455 5160 + lncRNA gene predicted gene, 41741
Tssr153423 18 58210408 to 58210419 11 - TSS region transcription start site region 153423
Tssr153424 18 58210439 to 58210457 18 - TSS region transcription start site region 153424
Tssr5338 18 58210522 to 58210569 47 - TSS region transcription start site region 5338
Tssr153425 18 58210570 to 58210573 3 - TSS region transcription start site region 153425
Tssr5339 18 58210585 to 58210594 9 - TSS region transcription start site region 5339
Tssr153426 18 58210731 to 58210744 13 - TSS region transcription start site region 153426
Tssr153427 18 58210763 to 58210771 8 - TSS region transcription start site region 153427
Gm26507 18 58215511 to 58222911 7400 + lincRNA gene predicted gene, 26507
Gm25660 18 58231472 to 58231575 103 - rRNA gene predicted gene, 25660
D18Mit52 18 58337615 to 58337755 140 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 52
Tssr151210 18 58408900 to 58408947 47 + TSS region transcription start site region 151210
Cpgi10082 18 58555693 to 58555992 299 CpG island CpG island 10082
Tssr151211 18 58555958 to 58556009 51 + TSS region transcription start site region 151211
Tssr151212 18 58556011 to 58556047 36 + TSS region transcription start site region 151212
Tssr151213 18 58556062 to 58556073 11 + TSS region transcription start site region 151213
Tssr151214 18 58556076 to 58556081 5 + TSS region transcription start site region 151214
Tssr151215 18 58556090 to 58556100 10 + TSS region transcription start site region 151215
Tssr151216 18 58556200 to 58556216 16 + TSS region transcription start site region 151216
Tssr151217 18 58556224 to 58556246 22 + TSS region transcription start site region 151217
Slc27a6 18 58556257 to 58612773 56516 + protein coding gene solute carrier family 27 (fatty acid transporter), member 6
Cpgi10083 18 58556666 to 58556897 231 CpG island CpG island 10083
Tssr151218 18 58572015 to 58572033 18 + TSS region transcription start site region 151218
Tssr151219 18 58612827 to 58612832 5 + TSS region transcription start site region 151219
Gm23270 18 58615359 to 58615489 130 - snoRNA gene predicted gene, 23270
Cpgi10084 18 58659082 to 58660104 1022 CpG island CpG island 10084
Tssr151220 18 58659443 to 58659522 79 + TSS region transcription start site region 151220
Isoc1 18 58659482 to 58679570 20088 + protein coding gene isochorismatase domain containing 1
Tssr151221 18 58667759 to 58667764 5 + TSS region transcription start site region 151221
Tssr151222 18 58677921 to 58677939 18 + TSS region transcription start site region 151222
Tssr151223 18 58678017 to 58678040 23 + TSS region transcription start site region 151223
Tssr151224 18 58725653 to 58725661 8 + TSS region transcription start site region 151224
D18Mit205 18 58786994 to 58787117 123 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 205
Cpgi10085 18 58835880 to 58838073 2193 CpG island CpG island 10085
Tssr151225 18 58836152 to 58836182 30 + TSS region transcription start site region 151225
Tssr151226 18 58836184 to 58836209 25 + TSS region transcription start site region 151226
Tssr151227 18 58836321 to 58836339 18 + TSS region transcription start site region 151227
Tssr151228 18 58836350 to 58836374 24 + TSS region transcription start site region 151228
Tssr151229 18 58836382 to 58836396 14 + TSS region transcription start site region 151229
Tssr151230 18 58836721 to 58836751 30 + TSS region transcription start site region 151230
Adamts19 18 58836764 to 59053678 216914 + protein coding gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 19
Gm18088 18 58930184 to 58931119 935 - pseudogene predicted gene, 18088
2610317O13Rik 18 58963573 to 58964689 1116 unclassified gene RIKEN cDNA 2610317O13 gene
Minar2 18 59062248 to 59076962 14714 + protein coding gene membrane integral NOTCH2 associated receptor 2
Tssr5340 18 59062312 to 59062338 26 + TSS region transcription start site region 5340
Tssr151231 18 59062344 to 59062376 32 + TSS region transcription start site region 151231
Tssr151232 18 59062379 to 59062389 10 + TSS region transcription start site region 151232
Tssr151233 18 59062488 to 59062538 50 + TSS region transcription start site region 151233
Tssr151234 18 59063689 to 59063700 11 + TSS region transcription start site region 151234
Tssr151235 18 59075588 to 59075599 11 + TSS region transcription start site region 151235
Cpgi10086 18 59174664 to 59176801 2137 CpG island CpG island 10086
Tssr151236 18 59175333 to 59175406 73 + TSS region transcription start site region 151236
Chsy3 18 59175401 to 59410446 235045 + protein coding gene chondroitin sulfate synthase 3
Tssr151237 18 59175408 to 59175463 55 + TSS region transcription start site region 151237
Tssr151238 18 59175472 to 59175493 21 + TSS region transcription start site region 151238
Cpgi10087 18 59179432 to 59179678 246 CpG island CpG island 10087
Tssr151239 18 59240022 to 59240025 3 + TSS region transcription start site region 151239
Gm19051 18 59245193 to 59245906 713 - pseudogene predicted gene, 19051
Cpgi10088 18 59408894 to 59409179 285 CpG island CpG island 10088
Mir6355 18 59579630 to 59579735 105 + miRNA gene microRNA 6355
Gm26028 18 59738064 to 59738357 293 - unclassified non-coding RNA gene predicted gene, 26028
Gm8697 18 59774108 to 59774471 363 - pseudogene predicted gene 8697
Tssr153428 18 59774499 to 59774502 3 - TSS region transcription start site region 153428
Gm38695 18 59825443 to 59843775 18332 - lncRNA gene predicted gene, 38695
Gm35234 18 59854569 to 59863934 9365 - lncRNA gene predicted gene, 35234
Gm41742 18 59865105 to 59876844 11739 - lncRNA gene predicted gene, 41742
Gm18217 18 59897577 to 59898087 510 + pseudogene predicted gene, 18217
Gm23576 18 60174317 to 60174426 109 + miRNA gene predicted gene, 23576
D18Mit28 18 60178048 to 60178271 223 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 28
Hrtfm4 18 60178048 to 60178271 223 QTL heart failure modifier 4
Gm18218 18 60185116 to 60185898 782 + pseudogene predicted gene, 18218
Tssr153429 18 60211551 to 60211562 11 - TSS region transcription start site region 153429
Tssr151240 18 60211970 to 60212033 63 + TSS region transcription start site region 151240
Gm4951 18 60212080 to 60247820 35740 + protein coding gene predicted gene 4951
Tssr151241 18 60212089 to 60212122 33 + TSS region transcription start site region 151241
Tssr151242 18 60212585 to 60212608 23 + TSS region transcription start site region 151242
Tssr151243 18 60213070 to 60213105 35 + TSS region transcription start site region 151243
Tssr151244 18 60213144 to 60213167 23 + TSS region transcription start site region 151244
Tssr151245 18 60214812 to 60214841 29 + TSS region transcription start site region 151245
Gm5970 18 60220843 to 60222058 1215 + pseudogene predicted gene 5970
Tssr151246 18 60222544 to 60222548 4 + TSS region transcription start site region 151246
Tssr151247 18 60223330 to 60223336 6 + TSS region transcription start site region 151247
Tssr151248 18 60226142 to 60226152 10 + TSS region transcription start site region 151248
Tssr151249 18 60229687 to 60229691 4 + TSS region transcription start site region 151249
Tssr151250 18 60231152 to 60231171 19 + TSS region transcription start site region 151250
Tssr151251 18 60235811 to 60235815 4 + TSS region transcription start site region 151251
Tssr153430 18 60238717 to 60238739 22 - TSS region transcription start site region 153430
Tssr151252 18 60238847 to 60238893 46 + TSS region transcription start site region 151252
Tssr151253 18 60238930 to 60238966 36 + TSS region transcription start site region 151253
Tssr151254 18 60242894 to 60242900 6 + TSS region transcription start site region 151254
Tssr151255 18 60246045 to 60246064 19 + TSS region transcription start site region 151255
Tssr151256 18 60246597 to 60246629 32 + TSS region transcription start site region 151256
Tssr151257 18 60246714 to 60246735 21 + TSS region transcription start site region 151257
Tssr151258 18 60247275 to 60247289 14 + TSS region transcription start site region 151258
Tssr151259 18 60247323 to 60247338 15 + TSS region transcription start site region 151259
Gm45947 18 60257185 to 60271350 14165 + lncRNA gene predicted gene, 45947
Gm4841 18 60268301 to 60273267 4966 - protein coding gene predicted gene 4841
Tssr153431 18 60269558 to 60269565 7 - TSS region transcription start site region 153431
Tssr153432 18 60269582 to 60269605 23 - TSS region transcription start site region 153432
Tssr153433 18 60269622 to 60269629 7 - TSS region transcription start site region 153433
Tssr153434 18 60269632 to 60269654 22 - TSS region transcription start site region 153434
Tssr153435 18 60269663 to 60269670 7 - TSS region transcription start site region 153435
Tssr153436 18 60269729 to 60269738 9 - TSS region transcription start site region 153436
Tssr153437 18 60269786 to 60269798 12 - TSS region transcription start site region 153437
Gm46635 18 60271379 to 60283874 12495 + lncRNA gene predicted gene, 46635
Tssr151260 18 60271490 to 60271497 7 + TSS region transcription start site region 151260
Tssr153438 18 60273266 to 60273277 11 - TSS region transcription start site region 153438
Tssr151261 18 60291333 to 60291345 12 + TSS region transcription start site region 151261
Tssr151262 18 60293372 to 60293387 15 + TSS region transcription start site region 151262
F830016B08Rik 18 60293380 to 60303016 9636 + protein coding gene RIKEN cDNA F830016B08 gene
Tssr151263 18 60300005 to 60300008 3 + TSS region transcription start site region 151263
Tssr151264 18 60300965 to 60300983 18 + TSS region transcription start site region 151264
Tssr151265 18 60301204 to 60301215 11 + TSS region transcription start site region 151265
Tssr151266 18 60303826 to 60303838 12 + TSS region transcription start site region 151266
Gm46612 18 60324838 to 60326032 1194 + protein coding gene predicted gene, 46612
Tssr151267 18 60358606 to 60358610 4 + TSS region transcription start site region 151267
Gm8714 18 60361443 to 60362672 1229 + pseudogene predicted gene 8714
Tssr151268 18 60373607 to 60373624 17 + TSS region transcription start site region 151268
Iigp1 18 60376029 to 60392627 16598 + protein coding gene interferon inducible GTPase 1
Tssr151269 18 60376053 to 60376079 26 + TSS region transcription start site region 151269
Tssr151270 18 60376126 to 60376144 18 + TSS region transcription start site region 151270
Tssr151271 18 60376445 to 60376490 45 + TSS region transcription start site region 151271
Tssr151272 18 60376517 to 60376545 28 + TSS region transcription start site region 151272
Tssr151273 18 60376607 to 60376622 15 + TSS region transcription start site region 151273
Tssr151274 18 60379173 to 60379200 27 + TSS region transcription start site region 151274
Tssr151275 18 60379239 to 60379278 39 + TSS region transcription start site region 151275
Tssr151276 18 60379462 to 60379474 12 + TSS region transcription start site region 151276
Tssr151277 18 60382597 to 60382631 34 + TSS region transcription start site region 151277
Tssr151278 18 60382714 to 60382747 33 + TSS region transcription start site region 151278
Tssr151279 18 60383448 to 60383451 3 + TSS region transcription start site region 151279
Tssr151280 18 60383660 to 60383666 6 + TSS region transcription start site region 151280
Tssr151281 18 60385008 to 60385024 16 + TSS region transcription start site region 151281
Tssr151282 18 60385703 to 60385705 2 + TSS region transcription start site region 151282
Tssr151283 18 60386064 to 60386075 11 + TSS region transcription start site region 151283
Tssr5341 18 60386190 to 60386201 11 + TSS region transcription start site region 5341
Tssr151284 18 60389800 to 60389829 29 + TSS region transcription start site region 151284
Tssr151285 18 60389842 to 60389864 22 + TSS region transcription start site region 151285
Tssr151286 18 60390120 to 60390134 14 + TSS region transcription start site region 151286
Tssr151287 18 60390181 to 60390190 9 + TSS region transcription start site region 151287
Tssr151288 18 60390192 to 60390213 21 + TSS region transcription start site region 151288
Tssr151289 18 60390461 to 60390483 22 + TSS region transcription start site region 151289
Tssr151290 18 60390539 to 60390566 27 + TSS region transcription start site region 151290
Tssr151291 18 60390631 to 60390641 10 + TSS region transcription start site region 151291
Tssr151292 18 60390649 to 60390676 27 + TSS region transcription start site region 151292
Tssr151293 18 60390828 to 60390844 16 + TSS region transcription start site region 151293