Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:56474068-56994082

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gramd3 18 56432132 to 56503792 71660 + protein coding gene GRAM domain containing 3
Tssr151143 18 56483365 to 56483370 5 + TSS region transcription start site region 151143
Tssr153376 18 56498852 to 56498863 11 - TSS region transcription start site region 153376
Tssr151144 18 56503876 to 56503901 25 + TSS region transcription start site region 151144
Tssr153377 18 56504393 to 56504419 26 - TSS region transcription start site region 153377
Tssr153378 18 56504440 to 56504447 7 - TSS region transcription start site region 153378
Tssr151145 18 56504700 to 56504708 8 + TSS region transcription start site region 151145
Tssr153379 18 56505590 to 56505599 9 - TSS region transcription start site region 153379
Tssr153380 18 56505636 to 56505637 1 - TSS region transcription start site region 153380
Tssr5324 18 56505672 to 56505677 5 - TSS region transcription start site region 5324
Tssr5325 18 56505798 to 56505803 5 + TSS region transcription start site region 5325
Tssr151146 18 56505821 to 56505827 6 + TSS region transcription start site region 151146
Gm8642 18 56518240 to 56519379 1139 + pseudogene predicted gene 8642
Aldh7a1 18 56524722 to 56572939 48217 - protein coding gene aldehyde dehydrogenase family 7, member A1
Mir1258 18 56538139 to 56538198 59 + miRNA gene microRNA 1258
Tssr5326 18 56546832 to 56546835 3 - TSS region transcription start site region 5326
Cpgi10069 18 56561996 to 56562751 755 CpG island CpG island 10069
Tssr153381 18 56562187 to 56562209 22 - TSS region transcription start site region 153381
Tssr153382 18 56562215 to 56562254 39 - TSS region transcription start site region 153382
Tssr153383 18 56562261 to 56562283 22 - TSS region transcription start site region 153383
Tssr153384 18 56562501 to 56562535 34 - TSS region transcription start site region 153384
Phax 18 56562569 to 56587712 25143 + protein coding gene phosphorylated adaptor for RNA export
Cpgi10070 18 56572613 to 56573673 1060 CpG island CpG island 10070
Tssr153385 18 56572866 to 56572882 16 - TSS region transcription start site region 153385
Tssr153386 18 56572888 to 56572945 57 - TSS region transcription start site region 153386
Tssr151147 18 56573002 to 56573039 37 + TSS region transcription start site region 151147
Tssr5327 18 56588338 to 56588339 1 + TSS region transcription start site region 5327
Tssr151148 18 56588342 to 56588359 17 + TSS region transcription start site region 151148
Tex43 18 56588350 to 56594782 6432 + protein coding gene testis expressed 43
Cpgi10071 18 56594575 to 56594870 295 CpG island CpG island 10071
Cpgi10072 18 56620993 to 56621244 251 CpG island CpG island 10072
Sstapa2 18 56661558 to 66819414 10157856 QTL suseptibility to Staphylococcus aureus infection 2
D18Mit122 18 56661558 to 56661706 148 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 122
Tssr153387 18 56675542 to 56675553 11 - TSS region transcription start site region 153387
Tssr151149 18 56675691 to 56675698 7 + TSS region transcription start site region 151149
Tssr151150 18 56676281 to 56676286 5 + TSS region transcription start site region 151150
Tssr151151 18 56676607 to 56676619 12 + TSS region transcription start site region 151151
Tssr151152 18 56676621 to 56676624 3 + TSS region transcription start site region 151152
Tssr151153 18 56676649 to 56676660 11 + TSS region transcription start site region 151153
Tssr151154 18 56676662 to 56676694 32 + TSS region transcription start site region 151154
Tssr151155 18 56676698 to 56676725 27 + TSS region transcription start site region 151155
Tssr153388 18 56677816 to 56677822 6 - TSS region transcription start site region 153388
Tssr151156 18 56677825 to 56677837 12 + TSS region transcription start site region 151156
Cpgi10073 18 56678615 to 56678799 184 CpG island CpG island 10073
Tssr151157 18 56678642 to 56678668 26 + TSS region transcription start site region 151157
Gm41738 18 56688352 to 56689098 746 - lncRNA gene predicted gene, 41738
Cpgi10074 18 56707265 to 56709339 2074 CpG island CpG island 10074
Tssr153389 18 56707389 to 56707420 31 - TSS region transcription start site region 153389
Tssr153390 18 56707429 to 56707446 17 - TSS region transcription start site region 153390
Tssr151158 18 56707725 to 56707940 215 + TSS region transcription start site region 151158
Lmnb1 18 56707813 to 56753424 45611 + protein coding gene lamin B1
Tssr151159 18 56707941 to 56707988 47 + TSS region transcription start site region 151159
Tssr153391 18 56708305 to 56708323 18 - TSS region transcription start site region 153391
Tssr153392 18 56708862 to 56708892 30 - TSS region transcription start site region 153392
Tssr151160 18 56732671 to 56732676 5 + TSS region transcription start site region 151160
Tssr151161 18 56733144 to 56733166 22 + TSS region transcription start site region 151161
Tssr151162 18 56733181 to 56733186 5 + TSS region transcription start site region 151162
Tssr151163 18 56733190 to 56733210 20 + TSS region transcription start site region 151163
Tssr151164 18 56733211 to 56733227 16 + TSS region transcription start site region 151164
Tssr151165 18 56733229 to 56733249 20 + TSS region transcription start site region 151165
Tssr151166 18 56733754 to 56733759 5 + TSS region transcription start site region 151166
Tssr153393 18 56733847 to 56733856 9 - TSS region transcription start site region 153393
Tssr5328 18 56733873 to 56733881 8 - TSS region transcription start site region 5328
Tssr151167 18 56734017 to 56734028 11 + TSS region transcription start site region 151167
Tssr151168 18 56734068 to 56734082 14 + TSS region transcription start site region 151168
Tssr151169 18 56734089 to 56734097 8 + TSS region transcription start site region 151169
Tssr151170 18 56737644 to 56737692 48 + TSS region transcription start site region 151170
Tssr151171 18 56746542 to 56746545 3 + TSS region transcription start site region 151171
March3 18 56761716 to 56925548 163832 - protein coding gene membrane-associated ring finger (C3HC4) 3
Tssr153394 18 56789284 to 56789287 3 - TSS region transcription start site region 153394
Tssr153395 18 56791492 to 56791496 4 - TSS region transcription start site region 153395
Gm15345 18 56795611 to 56807656 12045 + antisense lncRNA gene predicted gene 15345
Tssr153396 18 56846348 to 56846352 4 - TSS region transcription start site region 153396
Tssr153397 18 56853409 to 56853413 4 - TSS region transcription start site region 153397
Tssr153398 18 56863040 to 56863044 4 - TSS region transcription start site region 153398
Tssr153399 18 56867598 to 56867603 5 - TSS region transcription start site region 153399
Gm18087 18 56915360 to 56916089 729 - pseudogene predicted gene, 18087
Tssr153400 18 56919232 to 56919255 23 - TSS region transcription start site region 153400
Tssr153401 18 56921285 to 56921295 10 - TSS region transcription start site region 153401
Cpgi10075 18 56924645 to 56926110 1465 CpG island CpG island 10075
Tssr153402 18 56925509 to 56925522 13 - TSS region transcription start site region 153402
Gm34632 18 56925703 to 56967063 41360 + lncRNA gene predicted gene, 34632
Tssr151172 18 56925733 to 56925752 19 + TSS region transcription start site region 151172
Tssr151173 18 56925763 to 56925783 20 + TSS region transcription start site region 151173
Tssr151174 18 56927079 to 56927088 9 + TSS region transcription start site region 151174
Gm10536 18 56936260 to 56940518 4258 + lncRNA gene predicted gene 10536
C330018D20Rik 18 56955833 to 56975368 19535 - protein coding gene RIKEN cDNA C330018D20 gene
Tssr153403 18 56974057 to 56974067 10 - TSS region transcription start site region 153403
Tssr153404 18 56974128 to 56974153 25 - TSS region transcription start site region 153404
Cpgi10076 18 56975102 to 56975490 388 CpG island CpG island 10076
Tssr153405 18 56975333 to 56975376 43 - TSS region transcription start site region 153405
Tssr153406 18 56981181 to 56981221 40 - TSS region transcription start site region 153406