Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:54997636-56247920

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43 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm4221 18 54990310 to 55079414 89104 + lincRNA gene predicted gene 4221
Gm41731 18 55022585 to 55037586 15001 - lncRNA gene predicted gene, 41731
D18Mit121 18 55037501 to 55037590 89 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 121
Tssr151120 18 55042166 to 55042172 6 + TSS region transcription start site region 151120
Tssr151121 18 55057557 to 55057580 23 + TSS region transcription start site region 151121
5430416G10Rik 18 55081656 to 55083249 1593 unclassified gene RIKEN cDNA 5430416G10 gene
Gm24183 18 55085565 to 55085657 92 - snoRNA gene predicted gene, 24183
Gm34011 18 55126838 to 55131737 4899 - lncRNA gene predicted gene, 34011
Tssr153364 18 55131256 to 55131261 5 - TSS region transcription start site region 153364
Gm34073 18 55143574 to 55143785 211 + unclassified non-coding RNA gene predicted gene, 34073
Gm22597 18 55179840 to 55179919 79 + snRNA gene predicted gene, 22597
Cpgi10065 18 55257135 to 55257348 213 CpG island CpG island 10065
Tssr153365 18 55336356 to 55336357 1 - TSS region transcription start site region 153365
Gm37828 18 55339512 to 55339943 431 + unclassified gene predicted gene, 37828
Lscc3 18 55380148 to 55380287 139 QTL lung squamous cell carcinoma 3
D18Mit91 18 55380148 to 55380287 139 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 91
Gm34233 18 55419441 to 55461034 41593 + lncRNA gene predicted gene, 34233
Gm37337 18 55516122 to 55517114 992 - unclassified gene predicted gene, 37337
Tssr151122 18 55539754 to 55539766 12 + TSS region transcription start site region 151122
Gm34295 18 55592086 to 55646080 53994 - lncRNA gene predicted gene, 34295
D18Mit218 18 55592720 to 55592849 129 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology-218
Gm24514 18 55622636 to 55622920 284 - unclassified non-coding RNA gene predicted gene, 24514
Gm41733 18 55692906 to 55701532 8626 + lncRNA gene predicted gene, 41733
Gm41734 18 55726764 to 55733834 7070 - lncRNA gene predicted gene, 41734
Gm26959 18 55745251 to 55746228 977 - pseudogene predicted gene, 26959
Gm34345 18 55763201 to 55768202 5001 - lncRNA gene predicted gene, 34345
Tssr153366 18 55767865 to 55767878 13 - TSS region transcription start site region 153366
Gm8614 18 55837972 to 55838949 977 - pseudogene predicted gene 8614
Tssr153367 18 55839025 to 55839034 9 - TSS region transcription start site region 153367
Gm6942 18 55841569 to 55843178 1609 + pseudogene predicted gene 6942
Gm4230 18 55938152 to 55961878 23726 unclassified gene predicted gene 4230
Tssr151123 18 55939475 to 55939485 10 + TSS region transcription start site region 151123
Tssr153368 18 55939503 to 55939536 33 - TSS region transcription start site region 153368
Tssr151124 18 55939567 to 55939587 20 + TSS region transcription start site region 151124
Gm23335 18 55966852 to 55966941 89 - miRNA gene predicted gene, 23335
Nabq2 18 55970605 to 55970721 116 QTL nasal bone morphology QTL 2
D18Mit123 18 55970605 to 55970721 116 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 123
Gm6944 18 55972286 to 55973291 1005 + pseudogene predicted gene 6944
Gm22484 18 55987222 to 55987527 305 - unclassified non-coding RNA gene predicted gene, 22484
Gm41736 18 56031428 to 56033086 1658 - lncRNA gene predicted gene, 41736
Tssr5322 18 56075443 to 56075446 3 - TSS region transcription start site region 5322
Gm23555 18 56192999 to 56193133 134 + snoRNA gene predicted gene, 23555
Gm25476 18 56221834 to 56222018 184 + miRNA gene predicted gene, 25476