Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:54555148-56205287

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
9330117O12Rik 18 54611744 to 54639870 28126 + lncRNA gene RIKEN cDNA 9330117O12 gene
Tssr151113 18 54611788 to 54611799 11 + TSS region transcription start site region 151113
Tssr151114 18 54640478 to 54640508 30 + TSS region transcription start site region 151114
Cpgi10059 18 54698903 to 54699170 267 CpG island CpG island 10059
Tssr153339 18 54699137 to 54699176 39 - TSS region transcription start site region 153339
Gm5821 18 54766132 to 54766737 605 + pseudogene predicted gene 5821
Tssr151115 18 54771391 to 54771400 9 + TSS region transcription start site region 151115
Gm33732 18 54819414 to 54840255 20841 - lncRNA gene predicted gene, 33732
Tssr153340 18 54840031 to 54840040 9 - TSS region transcription start site region 153340
Tssr153341 18 54840128 to 54840133 5 - TSS region transcription start site region 153341
Tssr153342 18 54840134 to 54840137 3 - TSS region transcription start site region 153342
Msmr2 18 54842801 to 61105798 6262997 QTL MSM lymphoma resistance 2
Szs4 18 54842801 to 85496018 30653217 QTL seizure susceptibility 4
D18Mit90 18 54842801 to 54842928 127 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 90
Zfp608 18 54888045 to 54990180 102135 - protein coding gene zinc finger protein 608
Cpgi10060 18 54899086 to 54899608 522 CpG island CpG island 10060
Tssr153343 18 54901119 to 54901122 3 - TSS region transcription start site region 153343
Cpgi10061 18 54902301 to 54902614 313 CpG island CpG island 10061
Tssr151116 18 54906889 to 54906923 34 + TSS region transcription start site region 151116
Tssr153344 18 54908078 to 54908095 17 - TSS region transcription start site region 153344
Tssr153345 18 54917957 to 54917961 4 - TSS region transcription start site region 153345
AW490107 18 54955928 to 54956295 367 unclassified gene cDNA sequence AW490107
Tssr153346 18 54956713 to 54956725 12 - TSS region transcription start site region 153346
Tssr153347 18 54956743 to 54956754 11 - TSS region transcription start site region 153347
Tssr153348 18 54957774 to 54957789 15 - TSS region transcription start site region 153348
Tssr153349 18 54961647 to 54961667 20 - TSS region transcription start site region 153349
Tssr153350 18 54961679 to 54961691 12 - TSS region transcription start site region 153350
Tssr151117 18 54971038 to 54971072 34 + TSS region transcription start site region 151117
Tssr151118 18 54971292 to 54971294 2 + TSS region transcription start site region 151118
Cpgi10062 18 54973522 to 54973867 345 CpG island CpG island 10062
Gm26742 18 54981435 to 54987689 6254 + lincRNA gene predicted gene, 26742
Tssr153351 18 54985214 to 54985219 5 - TSS region transcription start site region 153351
Tssr153352 18 54987674 to 54987725 51 - TSS region transcription start site region 153352
Cpgi10063 18 54987681 to 54988098 417 CpG island CpG island 10063
Tssr153353 18 54988013 to 54988092 79 - TSS region transcription start site region 153353
Tssr153354 18 54988096 to 54988112 16 - TSS region transcription start site region 153354
Tssr153355 18 54988838 to 54988853 15 - TSS region transcription start site region 153355
Tssr153356 18 54989598 to 54989619 21 - TSS region transcription start site region 153356
Tssr153357 18 54990081 to 54990122 41 - TSS region transcription start site region 153357
Tssr153358 18 54990124 to 54990144 20 - TSS region transcription start site region 153358
Tssr151119 18 54990280 to 54990315 35 + TSS region transcription start site region 151119
Gm4221 18 54990310 to 55079414 89104 + lincRNA gene predicted gene 4221
Tssr153359 18 54990332 to 54990355 23 - TSS region transcription start site region 153359
Tssr153360 18 54990357 to 54990405 48 - TSS region transcription start site region 153360
Tssr153361 18 54990594 to 54990654 60 - TSS region transcription start site region 153361
Tssr5321 18 54990654 to 54990683 29 - TSS region transcription start site region 5321
Tssr153362 18 54992525 to 54992540 15 - TSS region transcription start site region 153362
Tssr153363 18 54992552 to 54992597 45 - TSS region transcription start site region 153363
Cpgi10064 18 54992914 to 54993068 154 CpG island CpG island 10064
Gm41731 18 55022585 to 55037586 15001 - lncRNA gene predicted gene, 41731
D18Mit121 18 55037501 to 55037590 89 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 121
Tssr151120 18 55042166 to 55042172 6 + TSS region transcription start site region 151120
Tssr151121 18 55057557 to 55057580 23 + TSS region transcription start site region 151121
5430416G10Rik 18 55081656 to 55083249 1593 unclassified gene RIKEN cDNA 5430416G10 gene
Gm24183 18 55085565 to 55085657 92 - snoRNA gene predicted gene, 24183
Gm34011 18 55126838 to 55131737 4899 - lncRNA gene predicted gene, 34011
Tssr153364 18 55131256 to 55131261 5 - TSS region transcription start site region 153364
Gm34073 18 55143574 to 55143785 211 + unclassified non-coding RNA gene predicted gene, 34073
Gm22597 18 55179840 to 55179919 79 + snRNA gene predicted gene, 22597
Cpgi10065 18 55257135 to 55257348 213 CpG island CpG island 10065
Tssr153365 18 55336356 to 55336357 1 - TSS region transcription start site region 153365
Gm37828 18 55339512 to 55339943 431 + unclassified gene predicted gene, 37828
D18Mit91 18 55380148 to 55380287 139 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 91
Lscc3 18 55380148 to 55380287 139 QTL lung squamous cell carcinoma 3
Gm34233 18 55419441 to 55461034 41593 + lncRNA gene predicted gene, 34233
Gm37337 18 55516122 to 55517114 992 - unclassified gene predicted gene, 37337
Tssr151122 18 55539754 to 55539766 12 + TSS region transcription start site region 151122
Gm34295 18 55592086 to 55646080 53994 - lncRNA gene predicted gene, 34295
D18Mit218 18 55592720 to 55592849 129 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology-218
Gm24514 18 55622636 to 55622920 284 - unclassified non-coding RNA gene predicted gene, 24514
Gm41733 18 55692906 to 55701532 8626 + lncRNA gene predicted gene, 41733
Gm41734 18 55726764 to 55733834 7070 - lncRNA gene predicted gene, 41734
Gm26959 18 55745251 to 55746228 977 - pseudogene predicted gene, 26959
Gm34345 18 55763201 to 55768202 5001 - lncRNA gene predicted gene, 34345
Tssr153366 18 55767865 to 55767878 13 - TSS region transcription start site region 153366
Gm8614 18 55837972 to 55838949 977 - pseudogene predicted gene 8614
Tssr153367 18 55839025 to 55839034 9 - TSS region transcription start site region 153367
Gm6942 18 55841569 to 55843178 1609 + pseudogene predicted gene 6942
Gm4230 18 55938152 to 55961878 23726 unclassified gene predicted gene 4230
Tssr151123 18 55939475 to 55939485 10 + TSS region transcription start site region 151123
Tssr153368 18 55939503 to 55939536 33 - TSS region transcription start site region 153368
Tssr151124 18 55939567 to 55939587 20 + TSS region transcription start site region 151124
Gm23335 18 55966852 to 55966941 89 - miRNA gene predicted gene, 23335
D18Mit123 18 55970605 to 55970721 116 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 123
Nabq2 18 55970605 to 55970721 116 QTL nasal bone morphology QTL 2
Gm6944 18 55972286 to 55973291 1005 + pseudogene predicted gene 6944
Gm22484 18 55987222 to 55987527 305 - unclassified non-coding RNA gene predicted gene, 22484
Gm41736 18 56031428 to 56033086 1658 - lncRNA gene predicted gene, 41736
Tssr5322 18 56075443 to 56075446 3 - TSS region transcription start site region 5322
Gm23555 18 56192999 to 56193133 134 + snoRNA gene predicted gene, 23555