Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:54261744-54989870

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm41730 18 54277270 to 54281236 3966 - lncRNA gene predicted gene, 41730
Gm33675 18 54337245 to 54339351 2106 + lncRNA gene predicted gene, 33675
Tssr151109 18 54422286 to 54422340 54 + TSS region transcription start site region 151109
Redrum 18 54422295 to 54452840 30545 + lincRNA gene Redrum, erythroid developmental long intergenic non-protein coding transcript
Tssr151110 18 54422370 to 54422381 11 + TSS region transcription start site region 151110
Gm20567 18 54423862 to 54423967 105 + pseudogene predicted gene, 20567
Tssr151111 18 54427018 to 54427022 4 + TSS region transcription start site region 151111
Tssr151112 18 54454461 to 54454466 5 + TSS region transcription start site region 151112
4933434P08Rik 18 54482729 to 54496387 13658 - lncRNA gene RIKEN cDNA 4933434P08 gene
Tssr153338 18 54496576 to 54496587 11 - TSS region transcription start site region 153338
9330117O12Rik 18 54611744 to 54639870 28126 + lncRNA gene RIKEN cDNA 9330117O12 gene
Tssr151113 18 54611788 to 54611799 11 + TSS region transcription start site region 151113
Tssr151114 18 54640478 to 54640508 30 + TSS region transcription start site region 151114
Cpgi10059 18 54698903 to 54699170 267 CpG island CpG island 10059
Tssr153339 18 54699137 to 54699176 39 - TSS region transcription start site region 153339
Gm5821 18 54766132 to 54766737 605 + pseudogene predicted gene 5821
Tssr151115 18 54771391 to 54771400 9 + TSS region transcription start site region 151115
Gm33732 18 54819414 to 54840255 20841 - lncRNA gene predicted gene, 33732
Tssr153340 18 54840031 to 54840040 9 - TSS region transcription start site region 153340
Tssr153341 18 54840128 to 54840133 5 - TSS region transcription start site region 153341
Tssr153342 18 54840134 to 54840137 3 - TSS region transcription start site region 153342
D18Mit90 18 54842801 to 54842928 127 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 90
Msmr2 18 54842801 to 61105798 6262997 QTL MSM lymphoma resistance 2
Szs4 18 54842801 to 85496018 30653217 QTL seizure susceptibility 4
Zfp608 18 54888045 to 54990180 102135 - protein coding gene zinc finger protein 608
Cpgi10060 18 54899086 to 54899608 522 CpG island CpG island 10060
Tssr153343 18 54901119 to 54901122 3 - TSS region transcription start site region 153343
Cpgi10061 18 54902301 to 54902614 313 CpG island CpG island 10061
Tssr151116 18 54906889 to 54906923 34 + TSS region transcription start site region 151116
Tssr153344 18 54908078 to 54908095 17 - TSS region transcription start site region 153344
Tssr153345 18 54917957 to 54917961 4 - TSS region transcription start site region 153345
AW490107 18 54955928 to 54956295 367 unclassified gene cDNA sequence AW490107
Tssr153346 18 54956713 to 54956725 12 - TSS region transcription start site region 153346
Tssr153347 18 54956743 to 54956754 11 - TSS region transcription start site region 153347
Tssr153348 18 54957774 to 54957789 15 - TSS region transcription start site region 153348
Tssr153349 18 54961647 to 54961667 20 - TSS region transcription start site region 153349
Tssr153350 18 54961679 to 54961691 12 - TSS region transcription start site region 153350
Tssr151117 18 54971038 to 54971072 34 + TSS region transcription start site region 151117
Tssr151118 18 54971292 to 54971294 2 + TSS region transcription start site region 151118
Cpgi10062 18 54973522 to 54973867 345 CpG island CpG island 10062
Gm26742 18 54981435 to 54987689 6254 + lincRNA gene predicted gene, 26742
Tssr153351 18 54985214 to 54985219 5 - TSS region transcription start site region 153351
Tssr153352 18 54987674 to 54987725 51 - TSS region transcription start site region 153352
Cpgi10063 18 54987681 to 54988098 417 CpG island CpG island 10063
Tssr153353 18 54988013 to 54988092 79 - TSS region transcription start site region 153353
Tssr153354 18 54988096 to 54988112 16 - TSS region transcription start site region 153354
Tssr153355 18 54988838 to 54988853 15 - TSS region transcription start site region 153355
Tssr153356 18 54989598 to 54989619 21 - TSS region transcription start site region 153356