Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:54241435-55727689

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm41730 18 54277270 to 54281236 3966 - lncRNA gene predicted gene, 41730
Gm33675 18 54337245 to 54339351 2106 + lncRNA gene predicted gene, 33675
Tssr151109 18 54422286 to 54422340 54 + TSS region transcription start site region 151109
Redrum 18 54422295 to 54452840 30545 + lincRNA gene Redrum, erythroid developmental long intergenic non-protein coding transcript
Tssr151110 18 54422370 to 54422381 11 + TSS region transcription start site region 151110
Gm20567 18 54423862 to 54423967 105 + pseudogene predicted gene, 20567
Tssr151111 18 54427018 to 54427022 4 + TSS region transcription start site region 151111
Tssr151112 18 54454461 to 54454466 5 + TSS region transcription start site region 151112
4933434P08Rik 18 54482729 to 54496387 13658 - lncRNA gene RIKEN cDNA 4933434P08 gene
Tssr153338 18 54496576 to 54496587 11 - TSS region transcription start site region 153338
9330117O12Rik 18 54611744 to 54639870 28126 + lncRNA gene RIKEN cDNA 9330117O12 gene
Tssr151113 18 54611788 to 54611799 11 + TSS region transcription start site region 151113
Tssr151114 18 54640478 to 54640508 30 + TSS region transcription start site region 151114
Cpgi10059 18 54698903 to 54699170 267 CpG island CpG island 10059
Tssr153339 18 54699137 to 54699176 39 - TSS region transcription start site region 153339
Gm5821 18 54766132 to 54766737 605 + pseudogene predicted gene 5821
Tssr151115 18 54771391 to 54771400 9 + TSS region transcription start site region 151115
Gm33732 18 54819414 to 54840255 20841 - lncRNA gene predicted gene, 33732
Tssr153340 18 54840031 to 54840040 9 - TSS region transcription start site region 153340
Tssr153341 18 54840128 to 54840133 5 - TSS region transcription start site region 153341
Tssr153342 18 54840134 to 54840137 3 - TSS region transcription start site region 153342
Msmr2 18 54842801 to 61105798 6262997 QTL MSM lymphoma resistance 2
Szs4 18 54842801 to 85496018 30653217 QTL seizure susceptibility 4
D18Mit90 18 54842801 to 54842928 127 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 90
Zfp608 18 54888045 to 54990180 102135 - protein coding gene zinc finger protein 608
Cpgi10060 18 54899086 to 54899608 522 CpG island CpG island 10060
Tssr153343 18 54901119 to 54901122 3 - TSS region transcription start site region 153343
Cpgi10061 18 54902301 to 54902614 313 CpG island CpG island 10061
Tssr151116 18 54906889 to 54906923 34 + TSS region transcription start site region 151116
Tssr153344 18 54908078 to 54908095 17 - TSS region transcription start site region 153344
Tssr153345 18 54917957 to 54917961 4 - TSS region transcription start site region 153345
AW490107 18 54955928 to 54956295 367 unclassified gene cDNA sequence AW490107
Tssr153346 18 54956713 to 54956725 12 - TSS region transcription start site region 153346
Tssr153347 18 54956743 to 54956754 11 - TSS region transcription start site region 153347
Tssr153348 18 54957774 to 54957789 15 - TSS region transcription start site region 153348
Tssr153349 18 54961647 to 54961667 20 - TSS region transcription start site region 153349
Tssr153350 18 54961679 to 54961691 12 - TSS region transcription start site region 153350
Tssr151117 18 54971038 to 54971072 34 + TSS region transcription start site region 151117
Tssr151118 18 54971292 to 54971294 2 + TSS region transcription start site region 151118
Cpgi10062 18 54973522 to 54973867 345 CpG island CpG island 10062
Gm26742 18 54981435 to 54987689 6254 + lincRNA gene predicted gene, 26742
Tssr153351 18 54985214 to 54985219 5 - TSS region transcription start site region 153351
Tssr153352 18 54987674 to 54987725 51 - TSS region transcription start site region 153352
Cpgi10063 18 54987681 to 54988098 417 CpG island CpG island 10063
Tssr153353 18 54988013 to 54988092 79 - TSS region transcription start site region 153353
Tssr153354 18 54988096 to 54988112 16 - TSS region transcription start site region 153354
Tssr153355 18 54988838 to 54988853 15 - TSS region transcription start site region 153355
Tssr153356 18 54989598 to 54989619 21 - TSS region transcription start site region 153356
Tssr153357 18 54990081 to 54990122 41 - TSS region transcription start site region 153357
Tssr153358 18 54990124 to 54990144 20 - TSS region transcription start site region 153358
Tssr151119 18 54990280 to 54990315 35 + TSS region transcription start site region 151119
Gm4221 18 54990310 to 55079414 89104 + lincRNA gene predicted gene 4221
Tssr153359 18 54990332 to 54990355 23 - TSS region transcription start site region 153359
Tssr153360 18 54990357 to 54990405 48 - TSS region transcription start site region 153360
Tssr153361 18 54990594 to 54990654 60 - TSS region transcription start site region 153361
Tssr5321 18 54990654 to 54990683 29 - TSS region transcription start site region 5321
Tssr153362 18 54992525 to 54992540 15 - TSS region transcription start site region 153362
Tssr153363 18 54992552 to 54992597 45 - TSS region transcription start site region 153363
Cpgi10064 18 54992914 to 54993068 154 CpG island CpG island 10064
Gm41731 18 55022585 to 55037586 15001 - lncRNA gene predicted gene, 41731
D18Mit121 18 55037501 to 55037590 89 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 121
Tssr151120 18 55042166 to 55042172 6 + TSS region transcription start site region 151120
Tssr151121 18 55057557 to 55057580 23 + TSS region transcription start site region 151121
5430416G10Rik 18 55081656 to 55083249 1593 unclassified gene RIKEN cDNA 5430416G10 gene
Gm24183 18 55085565 to 55085657 92 - snoRNA gene predicted gene, 24183
Gm34011 18 55126838 to 55131737 4899 - lncRNA gene predicted gene, 34011
Tssr153364 18 55131256 to 55131261 5 - TSS region transcription start site region 153364
Gm34073 18 55143574 to 55143785 211 + unclassified non-coding RNA gene predicted gene, 34073
Gm22597 18 55179840 to 55179919 79 + snRNA gene predicted gene, 22597
Cpgi10065 18 55257135 to 55257348 213 CpG island CpG island 10065
Tssr153365 18 55336356 to 55336357 1 - TSS region transcription start site region 153365
Gm37828 18 55339512 to 55339943 431 + unclassified gene predicted gene, 37828
Lscc3 18 55380148 to 55380287 139 QTL lung squamous cell carcinoma 3
D18Mit91 18 55380148 to 55380287 139 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 91
Gm34233 18 55419441 to 55461034 41593 + lncRNA gene predicted gene, 34233
Gm37337 18 55516122 to 55517114 992 - unclassified gene predicted gene, 37337
Tssr151122 18 55539754 to 55539766 12 + TSS region transcription start site region 151122
Gm34295 18 55592086 to 55646080 53994 - lncRNA gene predicted gene, 34295
D18Mit218 18 55592720 to 55592849 129 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology-218
Gm24514 18 55622636 to 55622920 284 - unclassified non-coding RNA gene predicted gene, 24514
Gm41733 18 55692906 to 55701532 8626 + lncRNA gene predicted gene, 41733
Gm41734 18 55726764 to 55733834 7070 - lncRNA gene predicted gene, 41734