Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:53822245-54854351

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41 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm41728 18 53853497 to 53859102 5605 + lncRNA gene predicted gene, 41728
D18Mit150 18 53858106 to 53858244 138 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 150
Cpgi10058 18 53861612 to 53863154 1542 CpG island CpG island 10058
Tssr153337 18 53861981 to 53861999 18 - TSS region transcription start site region 153337
Tssr151102 18 53862087 to 53862143 56 + TSS region transcription start site region 151102
Csnk1g3 18 53862113 to 53955684 93571 + protein coding gene casein kinase 1, gamma 3
Tssr151103 18 53862229 to 53862319 90 + TSS region transcription start site region 151103
Tssr151104 18 53862320 to 53862341 21 + TSS region transcription start site region 151104
Tssr5320 18 53862392 to 53862403 11 + TSS region transcription start site region 5320
D230007G03Rik 18 53866359 to 53867407 1048 unclassified gene RIKEN cDNA D230007G03 gene
Tssr151105 18 53877724 to 53877756 32 + TSS region transcription start site region 151105
Tssr151106 18 53889134 to 53889147 13 + TSS region transcription start site region 151106
Tssr151107 18 53922091 to 53922107 16 + TSS region transcription start site region 151107
Tssr151108 18 53937345 to 53937346 1 + TSS region transcription start site region 151108
Gm5507 18 53984321 to 53985328 1007 + pseudogene predicted gene 5507
Gm8594 18 54030704 to 54031310 606 - pseudogene predicted gene 8594
Gm41729 18 54209814 to 54220440 10626 - lncRNA gene predicted gene, 41729
Gm41730 18 54277270 to 54281236 3966 - lncRNA gene predicted gene, 41730
Gm33675 18 54337245 to 54339351 2106 + lncRNA gene predicted gene, 33675
Tssr151109 18 54422286 to 54422340 54 + TSS region transcription start site region 151109
Redrum 18 54422295 to 54452840 30545 + lincRNA gene Redrum, erythroid developmental long intergenic non-protein coding transcript
Tssr151110 18 54422370 to 54422381 11 + TSS region transcription start site region 151110
Gm20567 18 54423862 to 54423967 105 + pseudogene predicted gene, 20567
Tssr151111 18 54427018 to 54427022 4 + TSS region transcription start site region 151111
Tssr151112 18 54454461 to 54454466 5 + TSS region transcription start site region 151112
4933434P08Rik 18 54482729 to 54496387 13658 - lncRNA gene RIKEN cDNA 4933434P08 gene
Tssr153338 18 54496576 to 54496587 11 - TSS region transcription start site region 153338
9330117O12Rik 18 54611744 to 54639870 28126 + lncRNA gene RIKEN cDNA 9330117O12 gene
Tssr151113 18 54611788 to 54611799 11 + TSS region transcription start site region 151113
Tssr151114 18 54640478 to 54640508 30 + TSS region transcription start site region 151114
Cpgi10059 18 54698903 to 54699170 267 CpG island CpG island 10059
Tssr153339 18 54699137 to 54699176 39 - TSS region transcription start site region 153339
Gm5821 18 54766132 to 54766737 605 + pseudogene predicted gene 5821
Tssr151115 18 54771391 to 54771400 9 + TSS region transcription start site region 151115
Gm33732 18 54819414 to 54840255 20841 - lncRNA gene predicted gene, 33732
Tssr153340 18 54840031 to 54840040 9 - TSS region transcription start site region 153340
Tssr153341 18 54840128 to 54840133 5 - TSS region transcription start site region 153341
Tssr153342 18 54840134 to 54840137 3 - TSS region transcription start site region 153342
Szs4 18 54842801 to 85496018 30653217 QTL seizure susceptibility 4
Msmr2 18 54842801 to 61105798 6262997 QTL MSM lymphoma resistance 2
D18Mit90 18 54842801 to 54842928 127 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 90