Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:52840662-53650673

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sncaip 18 52767811 to 52915935 148124 + protein coding gene synuclein, alpha interacting protein (synphilin)
Tssr153324 18 52891985 to 52891987 2 - TSS region transcription start site region 153324
Tssr5316 18 52906402 to 52906405 3 + TSS region transcription start site region 5316
Gm8572 18 52952450 to 52953235 785 + pseudogene predicted gene 8572
Cpgi10048 18 52952769 to 52952930 161 CpG island CpG island 10048
Tssr153325 18 53033613 to 53033645 32 - TSS region transcription start site region 153325
Tssr151069 18 53050355 to 53050357 2 + TSS region transcription start site region 151069
D18Mit138 18 53058763 to 53058876 113 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 138
D18Mit105 18 53084348 to 53084487 139 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 105
D0Nds5 18 53102695 to 53102847 152 DNA segment DNA segment, Nuffield Department of Surgery 5
Tssr151070 18 53109282 to 53109332 50 + TSS region transcription start site region 151070
Tssr151071 18 53109362 to 53109365 3 + TSS region transcription start site region 151071
Tssr5317 18 53147825 to 53147836 11 + TSS region transcription start site region 5317
Tssr151072 18 53147878 to 53147882 4 + TSS region transcription start site region 151072
Chlq10 18 53157950 to 53158108 158 QTL circulating hormone level QTL 10
D18Mit55 18 53157950 to 53158108 158 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 55
Pgis1 18 53157950 to 76826598 23668648 QTL proteoglycan induced spondylitis 1
Cpgi10049 18 53176026 to 53177215 1189 CpG island CpG island 10049
Tssr151073 18 53176299 to 53176310 11 + TSS region transcription start site region 151073
Tssr151074 18 53176345 to 53176376 31 + TSS region transcription start site region 151074
Snx2 18 53176365 to 53220860 44495 + protein coding gene sorting nexin 2
Tssr151075 18 53181872 to 53181876 4 + TSS region transcription start site region 151075
Tssr151076 18 53193137 to 53193148 11 + TSS region transcription start site region 151076
Tssr151077 18 53195189 to 53195192 3 + TSS region transcription start site region 151077
Tssr151078 18 53210329 to 53210349 20 + TSS region transcription start site region 151078
Tssr151079 18 53213883 to 53213898 15 + TSS region transcription start site region 151079
Tssr151080 18 53213905 to 53213922 17 + TSS region transcription start site region 151080
Gm1859 18 53220969 to 53239462 18493 - pseudogene predicted gene 1859
Cpgi10050 18 53245067 to 53246102 1035 CpG island CpG island 10050
Tssr151081 18 53245578 to 53245607 29 + TSS region transcription start site region 151081
Tssr151082 18 53245618 to 53245634 16 + TSS region transcription start site region 151082
Tssr151083 18 53245638 to 53245659 21 + TSS region transcription start site region 151083
Tssr151084 18 53245662 to 53245673 11 + TSS region transcription start site region 151084
Snx24 18 53245662 to 53390823 145161 + protein coding gene sorting nexing 24
Tssr151085 18 53245736 to 53245786 50 + TSS region transcription start site region 151085
Tssr153326 18 53246653 to 53246684 31 - TSS region transcription start site region 153326
Tssr153327 18 53249676 to 53249693 17 - TSS region transcription start site region 153327
Tssr151086 18 53250930 to 53250934 4 + TSS region transcription start site region 151086
Tssr151087 18 53252168 to 53252179 11 + TSS region transcription start site region 151087
Tssr151088 18 53252404 to 53252416 12 + TSS region transcription start site region 151088
Tssr151089 18 53268549 to 53268565 16 + TSS region transcription start site region 151089
Tssr151090 18 53275829 to 53275835 6 + TSS region transcription start site region 151090
Tssr151091 18 53276591 to 53276595 4 + TSS region transcription start site region 151091
Tssr151092 18 53297302 to 53297318 16 + TSS region transcription start site region 151092
Gm18887 18 53305740 to 53307120 1380 + pseudogene predicted gene, 18887
Tssr151093 18 53320976 to 53320978 2 + TSS region transcription start site region 151093
Tssr151094 18 53323375 to 53323384 9 + TSS region transcription start site region 151094
Tssr151095 18 53341637 to 53341671 34 + TSS region transcription start site region 151095
Tssr151096 18 53345236 to 53345240 4 + TSS region transcription start site region 151096
Tssr151097 18 53349520 to 53349532 12 + TSS region transcription start site region 151097
Ppic 18 53406341 to 53418007 11666 - protein coding gene peptidylprolyl isomerase C
Cpgi10051 18 53417356 to 53418269 913 CpG island CpG island 10051
Tssr153328 18 53417965 to 53418003 38 - TSS region transcription start site region 153328
Tssr153329 18 53418004 to 53418044 40 - TSS region transcription start site region 153329
Tssr153330 18 53418055 to 53418066 11 - TSS region transcription start site region 153330
D18Mit54 18 53431874 to 53432021 147 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 54
Gm41726 18 53451513 to 53463804 12291 - lncRNA gene predicted gene, 41726
Cpgi10052 18 53462691 to 53465620 2929 CpG island CpG island 10052
Tssr151098 18 53463410 to 53463423 13 + TSS region transcription start site region 151098
Tssr151099 18 53463498 to 53463519 21 + TSS region transcription start site region 151099
Tssr151100 18 53463744 to 53463785 41 + TSS region transcription start site region 151100
Tssr151101 18 53464182 to 53464185 3 + TSS region transcription start site region 151101
Prdm6 18 53464546 to 53575907 111361 + protein coding gene PR domain containing 6
Tssr5318 18 53471134 to 53471137 3 + TSS region transcription start site region 5318
Cpgi10053 18 53472366 to 53472564 198 CpG island CpG island 10053
Cpgi10054 18 53473170 to 53473916 746 CpG island CpG island 10054
Tssr153331 18 53498685 to 53498689 4 - TSS region transcription start site region 153331
Tssr153332 18 53536215 to 53536223 8 - TSS region transcription start site region 153332
Cpgi10055 18 53552245 to 53552604 359 CpG island CpG island 10055
Cpgi10056 18 53574914 to 53575074 160 CpG island CpG island 10056
Gm19466 18 53648151 to 53705418 57267 + lncRNA gene predicted gene, 19466