Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:5246501-5837437

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47 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Zfp438 18 5210029 to 5334807 124778 - protein coding gene zinc finger protein 438
Tssr152321 18 5273257 to 5273276 19 - TSS region transcription start site region 152321
Tssr152322 18 5273278 to 5273299 21 - TSS region transcription start site region 152322
Tssr5238 18 5273312 to 5273318 6 - TSS region transcription start site region 5238
Tssr152323 18 5273321 to 5273325 4 - TSS region transcription start site region 152323
Cpgi9672 18 5333852 to 5334977 1125 CpG island CpG island 9672
Tssr152324 18 5334309 to 5334331 22 - TSS region transcription start site region 152324
Tssr152325 18 5334364 to 5334410 46 - TSS region transcription start site region 152325
Tssr152326 18 5334739 to 5334751 12 - TSS region transcription start site region 152326
Tssr152327 18 5334767 to 5334835 68 - TSS region transcription start site region 152327
D18Mit109 18 5336017 to 5336186 169 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 109
Gm50064 18 5348258 to 5361861 13603 - lincRNA gene predicted gene, 50064
Gm50065 18 5368541 to 5370482 1941 - lincRNA gene predicted gene, 50065
Gm34630 18 5389802 to 5402870 13068 - lncRNA gene predicted gene, 34630
Tssr152328 18 5404430 to 5404437 7 - TSS region transcription start site region 152328
Tssr152329 18 5404498 to 5404502 4 - TSS region transcription start site region 152329
Tssr152330 18 5404575 to 5404589 14 - TSS region transcription start site region 152330
Gm10125 18 5491501 to 5592437 100936 - lncRNA gene predicted gene 10125
Gm26575 18 5572824 to 5575055 2231 - sense intronic lncRNA gene predicted gene, 26575
Gm2238 18 5588043 to 5591711 3668 - unclassified gene predicted gene 2238
Cpgi9673 18 5591170 to 5593432 2262 CpG island CpG island 9673
Tssr149944 18 5591391 to 5591408 17 + TSS region transcription start site region 149944
Tssr149945 18 5591426 to 5591446 20 + TSS region transcription start site region 149945
Zeb1 18 5591860 to 5775467 183607 + protein coding gene zinc finger E-box binding homeobox 1
Tssr149946 18 5591868 to 5591902 34 + TSS region transcription start site region 149946
Tssr149947 18 5591910 to 5591919 9 + TSS region transcription start site region 149947
Tssr152331 18 5592431 to 5592469 38 - TSS region transcription start site region 152331
Tssr149948 18 5593347 to 5593351 4 + TSS region transcription start site region 149948
Tssr152332 18 5593377 to 5593388 11 - TSS region transcription start site region 152332
Tssr152333 18 5593429 to 5593455 26 - TSS region transcription start site region 152333
Tssr149949 18 5593566 to 5593586 20 + TSS region transcription start site region 149949
Tssr152334 18 5593795 to 5593814 19 - TSS region transcription start site region 152334
Tssr149950 18 5593882 to 5593900 18 + TSS region transcription start site region 149950
Tssr152335 18 5593909 to 5593917 8 - TSS region transcription start site region 152335
Tssr152336 18 5593927 to 5593942 15 - TSS region transcription start site region 152336
Tssr149951 18 5594199 to 5594230 31 + TSS region transcription start site region 149951
Tssr149952 18 5603739 to 5603761 22 + TSS region transcription start site region 149952
Tssr149953 18 5603762 to 5603776 14 + TSS region transcription start site region 149953
Gm16147 18 5611558 to 5611930 372 - pseudogene predicted gene 16147
Gm22709 18 5614473 to 5614583 110 + miRNA gene predicted gene, 22709
Tssr149954 18 5625968 to 5625972 4 + TSS region transcription start site region 149954
Tssr149955 18 5669262 to 5669269 7 + TSS region transcription start site region 149955
Tssr5239 18 5671156 to 5671159 3 + TSS region transcription start site region 5239
Tssr149956 18 5688820 to 5688823 3 + TSS region transcription start site region 149956
Tssr5240 18 5721377 to 5721384 7 + TSS region transcription start site region 5240
Tssr149957 18 5772694 to 5772707 13 + TSS region transcription start site region 149957
Cpgi9674 18 5819722 to 5820132 410 CpG island CpG island 9674