Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:51989630-53069643

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr5315 18 52056260 to 52056263 3 - TSS region transcription start site region 5315
D18Mit204 18 52128501 to 52128619 118 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 204
Gm22259 18 52154501 to 52154607 106 - snRNA gene predicted gene, 22259
Cpgi10044 18 52331386 to 52331770 384 CpG island CpG island 10044
Tssr151043 18 52331521 to 52331545 24 + TSS region transcription start site region 151043
Ftmt 18 52331536 to 52332986 1450 + protein coding gene ferritin mitochondrial
Cpgi10045 18 52465456 to 52466024 568 CpG island CpG island 10045
Tssr151044 18 52465676 to 52465710 34 + TSS region transcription start site region 151044
Srfbp1 18 52465693 to 52490738 25045 + protein coding gene serum response factor binding protein 1
Gm27026 18 52472848 to 52473739 891 - pseudogene predicted gene, 27026
Tssr151045 18 52486151 to 52486167 16 + TSS region transcription start site region 151045
Tssr153306 18 52488342 to 52488345 3 - TSS region transcription start site region 153306
Tssr151046 18 52488373 to 52488381 8 + TSS region transcription start site region 151046
Lox 18 52516069 to 52529867 13798 - protein coding gene lysyl oxidase
Tssr153307 18 52516605 to 52516631 26 - TSS region transcription start site region 153307
Tssr153308 18 52517679 to 52517686 7 - TSS region transcription start site region 153308
Tssr153309 18 52518488 to 52518502 14 - TSS region transcription start site region 153309
Tssr153310 18 52518737 to 52518741 4 - TSS region transcription start site region 153310
Tssr153311 18 52519088 to 52519109 21 - TSS region transcription start site region 153311
Pcyts6 18 52525560 to 52525779 219 QTL plasmacytoma susceptibility 6
D18Mit74 18 52525560 to 52525779 219 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 74
Tssr153312 18 52527741 to 52527764 23 - TSS region transcription start site region 153312
Tssr153313 18 52528348 to 52528385 37 - TSS region transcription start site region 153313
Cpgi10046 18 52528433 to 52529744 1311 CpG island CpG island 10046
Tssr153314 18 52528542 to 52528563 21 - TSS region transcription start site region 153314
Tssr151047 18 52528645 to 52528664 19 + TSS region transcription start site region 151047
Tssr151048 18 52528766 to 52528791 25 + TSS region transcription start site region 151048
Tssr151049 18 52528795 to 52528814 19 + TSS region transcription start site region 151049
Tssr151050 18 52529010 to 52529057 47 + TSS region transcription start site region 151050
Tssr151051 18 52529188 to 52529199 11 + TSS region transcription start site region 151051
Tssr153315 18 52529595 to 52529618 23 - TSS region transcription start site region 153315
Tssr153316 18 52529630 to 52529643 13 - TSS region transcription start site region 153316
Tssr153317 18 52529656 to 52529673 17 - TSS region transcription start site region 153317
Tssr153318 18 52529692 to 52529709 17 - TSS region transcription start site region 153318
Tssr153319 18 52529803 to 52529829 26 - TSS region transcription start site region 153319
Tssr153320 18 52529847 to 52529890 43 - TSS region transcription start site region 153320
Tssr153321 18 52529893 to 52529904 11 - TSS region transcription start site region 153321
Tssr153322 18 52529920 to 52529933 13 - TSS region transcription start site region 153322
Tssr153323 18 52530064 to 52530078 14 - TSS region transcription start site region 153323
Gm18151 18 52533614 to 52534313 699 + pseudogene predicted gene, 18151
D18Mit76 18 52550600 to 52550717 117 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 76
Tssr151052 18 52559193 to 52559198 5 + TSS region transcription start site region 151052
Tssr151053 18 52559225 to 52559245 20 + TSS region transcription start site region 151053
Gm41724 18 52563614 to 52577324 13710 + lncRNA gene predicted gene, 41724
Tssr151054 18 52565680 to 52565687 7 + TSS region transcription start site region 151054
Tssr151055 18 52615908 to 52615996 88 + TSS region transcription start site region 151055
Zfp474 18 52615915 to 52639830 23915 + protein coding gene zinc finger protein 474
Tssr151056 18 52616024 to 52616033 9 + TSS region transcription start site region 151056
Tssr151057 18 52646181 to 52646185 4 + TSS region transcription start site region 151057
Tssr151058 18 52646206 to 52646225 19 + TSS region transcription start site region 151058
1700034E13Rik 18 52646220 to 52663731 17511 + protein coding gene RIKEN cDNA 1700034E13 gene
Tssr151059 18 52693667 to 52693670 3 + TSS region transcription start site region 151059
Gykl1 18 52693679 to 52695593 1914 + protein coding gene glycerol kinase-like 1
Tssr151060 18 52693682 to 52693713 31 + TSS region transcription start site region 151060
Gm41725 18 52698927 to 52719273 20346 - lncRNA gene predicted gene, 41725
Tssr151061 18 52767695 to 52767737 42 + TSS region transcription start site region 151061
Cpgi10047 18 52767762 to 52769105 1343 CpG island CpG island 10047
Tssr151062 18 52767791 to 52767805 14 + TSS region transcription start site region 151062
Sncaip 18 52767811 to 52915935 148124 + protein coding gene synuclein, alpha interacting protein (synphilin)
Tssr151063 18 52768134 to 52768149 15 + TSS region transcription start site region 151063
Tssr151064 18 52768217 to 52768299 82 + TSS region transcription start site region 151064
Tssr151065 18 52768336 to 52768387 51 + TSS region transcription start site region 151065
Tssr151066 18 52768388 to 52768417 29 + TSS region transcription start site region 151066
Tssr151067 18 52800226 to 52800235 9 + TSS region transcription start site region 151067
Tssr151068 18 52801082 to 52801086 4 + TSS region transcription start site region 151068
Hplq2 18 52816637 to 52816637 0 QTL hot plate latency 2
Radpf4 18 52833084 to 68645706 15812622 QTL radiation pulmonary fibrosis 4
D18Mit53 18 52833084 to 52833226 142 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 53
Tssr153324 18 52891985 to 52891987 2 - TSS region transcription start site region 153324
Tssr5316 18 52906402 to 52906405 3 + TSS region transcription start site region 5316
Gm8572 18 52952450 to 52953235 785 + pseudogene predicted gene 8572
Cpgi10048 18 52952769 to 52952930 161 CpG island CpG island 10048
Tssr153325 18 53033613 to 53033645 32 - TSS region transcription start site region 153325
Tssr151069 18 53050355 to 53050357 2 + TSS region transcription start site region 151069
D18Mit138 18 53058763 to 53058876 113 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 138