Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:51445067-55046102

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228 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm41722 18 51555780 to 51566408 10628 + lncRNA gene predicted gene, 41722
Gm25785 18 51607544 to 51607668 124 - snRNA gene predicted gene, 25785
Gm4950 18 51865264 to 51865881 617 - pseudogene predicted pseudogene 4950
Gm41723 18 51936100 to 51954099 17999 + lncRNA gene predicted gene, 41723
Tssr5315 18 52056260 to 52056263 3 - TSS region transcription start site region 5315
D18Mit204 18 52128501 to 52128619 118 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 204
Gm22259 18 52154501 to 52154607 106 - snRNA gene predicted gene, 22259
Cpgi10044 18 52331386 to 52331770 384 CpG island CpG island 10044
Tssr151043 18 52331521 to 52331545 24 + TSS region transcription start site region 151043
Ftmt 18 52331536 to 52332986 1450 + protein coding gene ferritin mitochondrial
Cpgi10045 18 52465456 to 52466024 568 CpG island CpG island 10045
Tssr151044 18 52465676 to 52465710 34 + TSS region transcription start site region 151044
Srfbp1 18 52465693 to 52490738 25045 + protein coding gene serum response factor binding protein 1
Gm27026 18 52472848 to 52473739 891 - pseudogene predicted gene, 27026
Tssr151045 18 52486151 to 52486167 16 + TSS region transcription start site region 151045
Tssr153306 18 52488342 to 52488345 3 - TSS region transcription start site region 153306
Tssr151046 18 52488373 to 52488381 8 + TSS region transcription start site region 151046
Lox 18 52516069 to 52529867 13798 - protein coding gene lysyl oxidase
Tssr153307 18 52516605 to 52516631 26 - TSS region transcription start site region 153307
Tssr153308 18 52517679 to 52517686 7 - TSS region transcription start site region 153308
Tssr153309 18 52518488 to 52518502 14 - TSS region transcription start site region 153309
Tssr153310 18 52518737 to 52518741 4 - TSS region transcription start site region 153310
Tssr153311 18 52519088 to 52519109 21 - TSS region transcription start site region 153311
D18Mit74 18 52525560 to 52525779 219 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 74
Pcyts6 18 52525560 to 52525779 219 QTL plasmacytoma susceptibility 6
Tssr153312 18 52527741 to 52527764 23 - TSS region transcription start site region 153312
Tssr153313 18 52528348 to 52528385 37 - TSS region transcription start site region 153313
Cpgi10046 18 52528433 to 52529744 1311 CpG island CpG island 10046
Tssr153314 18 52528542 to 52528563 21 - TSS region transcription start site region 153314
Tssr151047 18 52528645 to 52528664 19 + TSS region transcription start site region 151047
Tssr151048 18 52528766 to 52528791 25 + TSS region transcription start site region 151048
Tssr151049 18 52528795 to 52528814 19 + TSS region transcription start site region 151049
Tssr151050 18 52529010 to 52529057 47 + TSS region transcription start site region 151050
Tssr151051 18 52529188 to 52529199 11 + TSS region transcription start site region 151051
Tssr153315 18 52529595 to 52529618 23 - TSS region transcription start site region 153315
Tssr153316 18 52529630 to 52529643 13 - TSS region transcription start site region 153316
Tssr153317 18 52529656 to 52529673 17 - TSS region transcription start site region 153317
Tssr153318 18 52529692 to 52529709 17 - TSS region transcription start site region 153318
Tssr153319 18 52529803 to 52529829 26 - TSS region transcription start site region 153319
Tssr153320 18 52529847 to 52529890 43 - TSS region transcription start site region 153320
Tssr153321 18 52529893 to 52529904 11 - TSS region transcription start site region 153321
Tssr153322 18 52529920 to 52529933 13 - TSS region transcription start site region 153322
Tssr153323 18 52530064 to 52530078 14 - TSS region transcription start site region 153323
Gm18151 18 52533614 to 52534313 699 + pseudogene predicted gene, 18151
D18Mit76 18 52550600 to 52550717 117 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 76
Tssr151052 18 52559193 to 52559198 5 + TSS region transcription start site region 151052
Tssr151053 18 52559225 to 52559245 20 + TSS region transcription start site region 151053
Gm41724 18 52563614 to 52577324 13710 + lncRNA gene predicted gene, 41724
Tssr151054 18 52565680 to 52565687 7 + TSS region transcription start site region 151054
Tssr151055 18 52615908 to 52615996 88 + TSS region transcription start site region 151055
Zfp474 18 52615915 to 52639830 23915 + protein coding gene zinc finger protein 474
Tssr151056 18 52616024 to 52616033 9 + TSS region transcription start site region 151056
Tssr151057 18 52646181 to 52646185 4 + TSS region transcription start site region 151057
Tssr151058 18 52646206 to 52646225 19 + TSS region transcription start site region 151058
1700034E13Rik 18 52646220 to 52663731 17511 + protein coding gene RIKEN cDNA 1700034E13 gene
Tssr151059 18 52693667 to 52693670 3 + TSS region transcription start site region 151059
Gykl1 18 52693679 to 52695593 1914 + protein coding gene glycerol kinase-like 1
Tssr151060 18 52693682 to 52693713 31 + TSS region transcription start site region 151060
Gm41725 18 52698927 to 52719273 20346 - lncRNA gene predicted gene, 41725
Tssr151061 18 52767695 to 52767737 42 + TSS region transcription start site region 151061
Cpgi10047 18 52767762 to 52769105 1343 CpG island CpG island 10047
Tssr151062 18 52767791 to 52767805 14 + TSS region transcription start site region 151062
Sncaip 18 52767811 to 52915935 148124 + protein coding gene synuclein, alpha interacting protein (synphilin)
Tssr151063 18 52768134 to 52768149 15 + TSS region transcription start site region 151063
Tssr151064 18 52768217 to 52768299 82 + TSS region transcription start site region 151064
Tssr151065 18 52768336 to 52768387 51 + TSS region transcription start site region 151065
Tssr151066 18 52768388 to 52768417 29 + TSS region transcription start site region 151066
Tssr151067 18 52800226 to 52800235 9 + TSS region transcription start site region 151067
Tssr151068 18 52801082 to 52801086 4 + TSS region transcription start site region 151068
Hplq2 18 52816637 to 52816637 0 QTL hot plate latency 2
D18Mit53 18 52833084 to 52833226 142 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 53
Radpf4 18 52833084 to 68645706 15812622 QTL radiation pulmonary fibrosis 4
Tssr153324 18 52891985 to 52891987 2 - TSS region transcription start site region 153324
Tssr5316 18 52906402 to 52906405 3 + TSS region transcription start site region 5316
Gm8572 18 52952450 to 52953235 785 + pseudogene predicted gene 8572
Cpgi10048 18 52952769 to 52952930 161 CpG island CpG island 10048
Tssr153325 18 53033613 to 53033645 32 - TSS region transcription start site region 153325
Tssr151069 18 53050355 to 53050357 2 + TSS region transcription start site region 151069
D18Mit138 18 53058763 to 53058876 113 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 138
D18Mit105 18 53084348 to 53084487 139 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 105
D0Nds5 18 53102695 to 53102847 152 DNA segment DNA segment, Nuffield Department of Surgery 5
Tssr151070 18 53109282 to 53109332 50 + TSS region transcription start site region 151070
Tssr151071 18 53109362 to 53109365 3 + TSS region transcription start site region 151071
Tssr5317 18 53147825 to 53147836 11 + TSS region transcription start site region 5317
Tssr151072 18 53147878 to 53147882 4 + TSS region transcription start site region 151072
Pgis1 18 53157950 to 76826598 23668648 QTL proteoglycan induced spondylitis 1
Chlq10 18 53157950 to 53158108 158 QTL circulating hormone level QTL 10
D18Mit55 18 53157950 to 53158108 158 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 55
Cpgi10049 18 53176026 to 53177215 1189 CpG island CpG island 10049
Tssr151073 18 53176299 to 53176310 11 + TSS region transcription start site region 151073
Tssr151074 18 53176345 to 53176376 31 + TSS region transcription start site region 151074
Snx2 18 53176365 to 53220860 44495 + protein coding gene sorting nexin 2
Tssr151075 18 53181872 to 53181876 4 + TSS region transcription start site region 151075
Tssr151076 18 53193137 to 53193148 11 + TSS region transcription start site region 151076
Tssr151077 18 53195189 to 53195192 3 + TSS region transcription start site region 151077
Tssr151078 18 53210329 to 53210349 20 + TSS region transcription start site region 151078
Tssr151079 18 53213883 to 53213898 15 + TSS region transcription start site region 151079
Tssr151080 18 53213905 to 53213922 17 + TSS region transcription start site region 151080
Gm1859 18 53220969 to 53239462 18493 - pseudogene predicted gene 1859
Cpgi10050 18 53245067 to 53246102 1035 CpG island CpG island 10050
Tssr151081 18 53245578 to 53245607 29 + TSS region transcription start site region 151081
Tssr151082 18 53245618 to 53245634 16 + TSS region transcription start site region 151082
Tssr151083 18 53245638 to 53245659 21 + TSS region transcription start site region 151083
Snx24 18 53245662 to 53390823 145161 + protein coding gene sorting nexing 24
Tssr151084 18 53245662 to 53245673 11 + TSS region transcription start site region 151084
Tssr151085 18 53245736 to 53245786 50 + TSS region transcription start site region 151085
Tssr153326 18 53246653 to 53246684 31 - TSS region transcription start site region 153326
Tssr153327 18 53249676 to 53249693 17 - TSS region transcription start site region 153327
Tssr151086 18 53250930 to 53250934 4 + TSS region transcription start site region 151086
Tssr151087 18 53252168 to 53252179 11 + TSS region transcription start site region 151087
Tssr151088 18 53252404 to 53252416 12 + TSS region transcription start site region 151088
Tssr151089 18 53268549 to 53268565 16 + TSS region transcription start site region 151089
Tssr151090 18 53275829 to 53275835 6 + TSS region transcription start site region 151090
Tssr151091 18 53276591 to 53276595 4 + TSS region transcription start site region 151091
Tssr151092 18 53297302 to 53297318 16 + TSS region transcription start site region 151092
Gm18887 18 53305740 to 53307120 1380 + pseudogene predicted gene, 18887
Tssr151093 18 53320976 to 53320978 2 + TSS region transcription start site region 151093
Tssr151094 18 53323375 to 53323384 9 + TSS region transcription start site region 151094
Tssr151095 18 53341637 to 53341671 34 + TSS region transcription start site region 151095
Tssr151096 18 53345236 to 53345240 4 + TSS region transcription start site region 151096
Tssr151097 18 53349520 to 53349532 12 + TSS region transcription start site region 151097
Ppic 18 53406341 to 53418007 11666 - protein coding gene peptidylprolyl isomerase C
Cpgi10051 18 53417356 to 53418269 913 CpG island CpG island 10051
Tssr153328 18 53417965 to 53418003 38 - TSS region transcription start site region 153328
Tssr153329 18 53418004 to 53418044 40 - TSS region transcription start site region 153329
Tssr153330 18 53418055 to 53418066 11 - TSS region transcription start site region 153330
D18Mit54 18 53431874 to 53432021 147 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 54
Gm41726 18 53451513 to 53463804 12291 - lncRNA gene predicted gene, 41726
Cpgi10052 18 53462691 to 53465620 2929 CpG island CpG island 10052
Tssr151098 18 53463410 to 53463423 13 + TSS region transcription start site region 151098
Tssr151099 18 53463498 to 53463519 21 + TSS region transcription start site region 151099
Tssr151100 18 53463744 to 53463785 41 + TSS region transcription start site region 151100
Tssr151101 18 53464182 to 53464185 3 + TSS region transcription start site region 151101
Prdm6 18 53464546 to 53575907 111361 + protein coding gene PR domain containing 6
Tssr5318 18 53471134 to 53471137 3 + TSS region transcription start site region 5318
Cpgi10053 18 53472366 to 53472564 198 CpG island CpG island 10053
Cpgi10054 18 53473170 to 53473916 746 CpG island CpG island 10054
Tssr153331 18 53498685 to 53498689 4 - TSS region transcription start site region 153331
Tssr153332 18 53536215 to 53536223 8 - TSS region transcription start site region 153332
Cpgi10055 18 53552245 to 53552604 359 CpG island CpG island 10055
Cpgi10056 18 53574914 to 53575074 160 CpG island CpG island 10056
Gm19466 18 53648151 to 53705418 57267 + lncRNA gene predicted gene, 19466
Cep120 18 53681724 to 53744547 62823 - protein coding gene centrosomal protein 120
Tssr153333 18 53723176 to 53723197 21 - TSS region transcription start site region 153333
Cpgi10057 18 53744084 to 53744885 801 CpG island CpG island 10057
Tssr5319 18 53744480 to 53744492 12 - TSS region transcription start site region 5319
Tssr153334 18 53744509 to 53744629 120 - TSS region transcription start site region 153334
Tssr153335 18 53744670 to 53744692 22 - TSS region transcription start site region 153335
Tssr153336 18 53744728 to 53744743 15 - TSS region transcription start site region 153336
Gm41728 18 53853497 to 53859102 5605 + lncRNA gene predicted gene, 41728
D18Mit150 18 53858106 to 53858244 138 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 150
Cpgi10058 18 53861612 to 53863154 1542 CpG island CpG island 10058
Tssr153337 18 53861981 to 53861999 18 - TSS region transcription start site region 153337
Tssr151102 18 53862087 to 53862143 56 + TSS region transcription start site region 151102
Csnk1g3 18 53862113 to 53955684 93571 + protein coding gene casein kinase 1, gamma 3
Tssr151103 18 53862229 to 53862319 90 + TSS region transcription start site region 151103
Tssr151104 18 53862320 to 53862341 21 + TSS region transcription start site region 151104
Tssr5320 18 53862392 to 53862403 11 + TSS region transcription start site region 5320
D230007G03Rik 18 53866359 to 53867407 1048 unclassified gene RIKEN cDNA D230007G03 gene
Tssr151105 18 53877724 to 53877756 32 + TSS region transcription start site region 151105
Tssr151106 18 53889134 to 53889147 13 + TSS region transcription start site region 151106
Tssr151107 18 53922091 to 53922107 16 + TSS region transcription start site region 151107
Tssr151108 18 53937345 to 53937346 1 + TSS region transcription start site region 151108
Gm5507 18 53984321 to 53985328 1007 + pseudogene predicted gene 5507
Gm8594 18 54030704 to 54031310 606 - pseudogene predicted gene 8594
Gm41729 18 54209814 to 54220440 10626 - lncRNA gene predicted gene, 41729
Gm41730 18 54277270 to 54281236 3966 - lncRNA gene predicted gene, 41730
Gm33675 18 54337245 to 54339351 2106 + lncRNA gene predicted gene, 33675
Tssr151109 18 54422286 to 54422340 54 + TSS region transcription start site region 151109
Redrum 18 54422295 to 54452840 30545 + lincRNA gene Redrum, erythroid developmental long intergenic non-protein coding transcript
Tssr151110 18 54422370 to 54422381 11 + TSS region transcription start site region 151110
Gm20567 18 54423862 to 54423967 105 + pseudogene predicted gene, 20567
Tssr151111 18 54427018 to 54427022 4 + TSS region transcription start site region 151111
Tssr151112 18 54454461 to 54454466 5 + TSS region transcription start site region 151112
4933434P08Rik 18 54482729 to 54496387 13658 - lncRNA gene RIKEN cDNA 4933434P08 gene
Tssr153338 18 54496576 to 54496587 11 - TSS region transcription start site region 153338
9330117O12Rik 18 54611744 to 54639870 28126 + lncRNA gene RIKEN cDNA 9330117O12 gene
Tssr151113 18 54611788 to 54611799 11 + TSS region transcription start site region 151113
Tssr151114 18 54640478 to 54640508 30 + TSS region transcription start site region 151114
Cpgi10059 18 54698903 to 54699170 267 CpG island CpG island 10059
Tssr153339 18 54699137 to 54699176 39 - TSS region transcription start site region 153339
Gm5821 18 54766132 to 54766737 605 + pseudogene predicted gene 5821
Tssr151115 18 54771391 to 54771400 9 + TSS region transcription start site region 151115
Gm33732 18 54819414 to 54840255 20841 - lncRNA gene predicted gene, 33732
Tssr153340 18 54840031 to 54840040 9 - TSS region transcription start site region 153340
Tssr153341 18 54840128 to 54840133 5 - TSS region transcription start site region 153341
Tssr153342 18 54840134 to 54840137 3 - TSS region transcription start site region 153342
Szs4 18 54842801 to 85496018 30653217 QTL seizure susceptibility 4
D18Mit90 18 54842801 to 54842928 127 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 90
Msmr2 18 54842801 to 61105798 6262997 QTL MSM lymphoma resistance 2
Zfp608 18 54888045 to 54990180 102135 - protein coding gene zinc finger protein 608
Cpgi10060 18 54899086 to 54899608 522 CpG island CpG island 10060
Tssr153343 18 54901119 to 54901122 3 - TSS region transcription start site region 153343
Cpgi10061 18 54902301 to 54902614 313 CpG island CpG island 10061
Tssr151116 18 54906889 to 54906923 34 + TSS region transcription start site region 151116
Tssr153344 18 54908078 to 54908095 17 - TSS region transcription start site region 153344
Tssr153345 18 54917957 to 54917961 4 - TSS region transcription start site region 153345
AW490107 18 54955928 to 54956295 367 unclassified gene cDNA sequence AW490107
Tssr153346 18 54956713 to 54956725 12 - TSS region transcription start site region 153346
Tssr153347 18 54956743 to 54956754 11 - TSS region transcription start site region 153347