Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:4998852-5669977

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52 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Svil 18 4920540 to 5119299 198759 + protein coding gene supervillin
Tssr149942 18 5035071 to 5035114 43 + TSS region transcription start site region 149942
W3q15 18 5041119 to 61139571 56098452 QTL weight 3 weeks QTL 15
D18Mit19 18 5041119 to 5041269 150 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 19
Gm34326 18 5042818 to 5048867 6049 - lncRNA gene predicted gene, 34326
Tssr149943 18 5125610 to 5125615 5 + TSS region transcription start site region 149943
Gm34541 18 5139349 to 5142068 2719 + lncRNA gene predicted gene, 34541
Gm26682 18 5141762 to 5142801 1039 - lincRNA gene predicted gene, 26682
Cpgi9670 18 5162226 to 5162716 490 CpG island CpG island 9670
Cpgi9671 18 5162989 to 5163731 742 CpG island CpG island 9671
Zfp438 18 5210029 to 5334807 124778 - protein coding gene zinc finger protein 438
Tssr152321 18 5273257 to 5273276 19 - TSS region transcription start site region 152321
Tssr152322 18 5273278 to 5273299 21 - TSS region transcription start site region 152322
Tssr5238 18 5273312 to 5273318 6 - TSS region transcription start site region 5238
Tssr152323 18 5273321 to 5273325 4 - TSS region transcription start site region 152323
Cpgi9672 18 5333852 to 5334977 1125 CpG island CpG island 9672
Tssr152324 18 5334309 to 5334331 22 - TSS region transcription start site region 152324
Tssr152325 18 5334364 to 5334410 46 - TSS region transcription start site region 152325
Tssr152326 18 5334739 to 5334751 12 - TSS region transcription start site region 152326
Tssr152327 18 5334767 to 5334835 68 - TSS region transcription start site region 152327
D18Mit109 18 5336017 to 5336186 169 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 109
Gm50064 18 5348258 to 5361861 13603 - lincRNA gene predicted gene, 50064
Gm50065 18 5368541 to 5370482 1941 - lincRNA gene predicted gene, 50065
Gm34630 18 5389802 to 5402870 13068 - lncRNA gene predicted gene, 34630
Tssr152328 18 5404430 to 5404437 7 - TSS region transcription start site region 152328
Tssr152329 18 5404498 to 5404502 4 - TSS region transcription start site region 152329
Tssr152330 18 5404575 to 5404589 14 - TSS region transcription start site region 152330
Gm10125 18 5491501 to 5592437 100936 - lncRNA gene predicted gene 10125
Gm26575 18 5572824 to 5575055 2231 - sense intronic lncRNA gene predicted gene, 26575
Gm2238 18 5588043 to 5591711 3668 - unclassified gene predicted gene 2238
Cpgi9673 18 5591170 to 5593432 2262 CpG island CpG island 9673
Tssr149944 18 5591391 to 5591408 17 + TSS region transcription start site region 149944
Tssr149945 18 5591426 to 5591446 20 + TSS region transcription start site region 149945
Zeb1 18 5591860 to 5775467 183607 + protein coding gene zinc finger E-box binding homeobox 1
Tssr149946 18 5591868 to 5591902 34 + TSS region transcription start site region 149946
Tssr149947 18 5591910 to 5591919 9 + TSS region transcription start site region 149947
Tssr152331 18 5592431 to 5592469 38 - TSS region transcription start site region 152331
Tssr149948 18 5593347 to 5593351 4 + TSS region transcription start site region 149948
Tssr152332 18 5593377 to 5593388 11 - TSS region transcription start site region 152332
Tssr152333 18 5593429 to 5593455 26 - TSS region transcription start site region 152333
Tssr149949 18 5593566 to 5593586 20 + TSS region transcription start site region 149949
Tssr152334 18 5593795 to 5593814 19 - TSS region transcription start site region 152334
Tssr149950 18 5593882 to 5593900 18 + TSS region transcription start site region 149950
Tssr152335 18 5593909 to 5593917 8 - TSS region transcription start site region 152335
Tssr152336 18 5593927 to 5593942 15 - TSS region transcription start site region 152336
Tssr149951 18 5594199 to 5594230 31 + TSS region transcription start site region 149951
Tssr149952 18 5603739 to 5603761 22 + TSS region transcription start site region 149952
Tssr149953 18 5603762 to 5603776 14 + TSS region transcription start site region 149953
Gm16147 18 5611558 to 5611930 372 - pseudogene predicted gene 16147
Gm22709 18 5614473 to 5614583 110 + miRNA gene predicted gene, 22709
Tssr149954 18 5625968 to 5625972 4 + TSS region transcription start site region 149954
Tssr149955 18 5669262 to 5669269 7 + TSS region transcription start site region 149955