Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:49983371-50573403

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60 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tnfaip8 18 49979427 to 50093229 113802 + protein coding gene tumor necrosis factor, alpha-induced protein 8
Tssr150998 18 50001243 to 50001276 33 + TSS region transcription start site region 150998
Tssr153297 18 50010694 to 50010703 9 - TSS region transcription start site region 153297
Gm33335 18 50013498 to 50026256 12758 - lncRNA gene predicted gene, 33335
Tssr150999 18 50017023 to 50017037 14 + TSS region transcription start site region 150999
Tssr151000 18 50019739 to 50019748 9 + TSS region transcription start site region 151000
Tssr151001 18 50024336 to 50024345 9 + TSS region transcription start site region 151001
Tssr151002 18 50026294 to 50026297 3 + TSS region transcription start site region 151002
Tssr151003 18 50030659 to 50030683 24 + TSS region transcription start site region 151003
Tssr151004 18 50030686 to 50030745 59 + TSS region transcription start site region 151004
Tssr151005 18 50030977 to 50031043 66 + TSS region transcription start site region 151005
Tssr151006 18 50031070 to 50031088 18 + TSS region transcription start site region 151006
Cpgi10039 18 50031188 to 50031421 233 CpG island CpG island 10039
Tssr151007 18 50031296 to 50031324 28 + TSS region transcription start site region 151007
Tssr151008 18 50038832 to 50038836 4 + TSS region transcription start site region 151008
C030005K06Rik 18 50042730 to 50053844 11114 - lncRNA gene RIKEN cDNA C030005K06 gene
Tssr151009 18 50051702 to 50051717 15 + TSS region transcription start site region 151009
Cpgi10040 18 50052965 to 50053902 937 CpG island CpG island 10040
Tssr151010 18 50052997 to 50053004 7 + TSS region transcription start site region 151010
Tssr151011 18 50053014 to 50053024 10 + TSS region transcription start site region 151011
Tssr151012 18 50053394 to 50053404 10 + TSS region transcription start site region 151012
Tssr151013 18 50053436 to 50053457 21 + TSS region transcription start site region 151013
Tssr151014 18 50053466 to 50053523 57 + TSS region transcription start site region 151014
Tssr151015 18 50053541 to 50053544 3 + TSS region transcription start site region 151015
Tssr153298 18 50053648 to 50053662 14 - TSS region transcription start site region 153298
Tssr151016 18 50056983 to 50056997 14 + TSS region transcription start site region 151016
Tssr151017 18 50057105 to 50057118 13 + TSS region transcription start site region 151017
Tssr151018 18 50057240 to 50057254 14 + TSS region transcription start site region 151018
Tssr151019 18 50075810 to 50075816 6 + TSS region transcription start site region 151019
Cpgi10041 18 50083043 to 50083285 242 CpG island CpG island 10041
Tssr151020 18 50083905 to 50083909 4 + TSS region transcription start site region 151020
Tssr151021 18 50095713 to 50095718 5 + TSS region transcription start site region 151021
Cpgi10042 18 50128117 to 50128655 538 CpG island CpG island 10042
Tssr151022 18 50128200 to 50128205 5 + TSS region transcription start site region 151022
Hsd17b4 18 50128201 to 50196269 68068 + protein coding gene hydroxysteroid (17-beta) dehydrogenase 4
Tssr151023 18 50128211 to 50128267 56 + TSS region transcription start site region 151023
Tssr151024 18 50128269 to 50128333 64 + TSS region transcription start site region 151024
Tssr151025 18 50131365 to 50131369 4 + TSS region transcription start site region 151025
Cd63-ps 18 50134729 to 50135600 871 + pseudogene CD63 antigen, pseudogene
Tssr151026 18 50134750 to 50134766 16 + TSS region transcription start site region 151026
Tssr151027 18 50134820 to 50134857 37 + TSS region transcription start site region 151027
Tssr151028 18 50135003 to 50135048 45 + TSS region transcription start site region 151028
Tssr153299 18 50135235 to 50135261 26 - TSS region transcription start site region 153299
Tssr151029 18 50155517 to 50155521 4 + TSS region transcription start site region 151029
Gm33376 18 50170882 to 50181925 11043 - lncRNA gene predicted gene, 33376
Tssr153300 18 50181237 to 50181269 32 - TSS region transcription start site region 153300
Tssr151030 18 50181335 to 50181344 9 + TSS region transcription start site region 151030
Gm8529 18 50220071 to 50220815 744 - pseudogene predicted gene 8529
Gm46613 18 50220921 to 50226464 5543 + lncRNA gene predicted gene, 46613
Tssr153301 18 50224700 to 50224702 2 - TSS region transcription start site region 153301
Tssr151031 18 50278364 to 50278367 3 + TSS region transcription start site region 151031
Fam170a 18 50278369 to 50283019 4650 + protein coding gene family with sequence similarity 170, member A
Tssr151032 18 50278371 to 50278403 32 + TSS region transcription start site region 151032
Tssr151033 18 50395131 to 50395148 17 + TSS region transcription start site region 151033
Tssr151034 18 50395295 to 50395330 35 + TSS region transcription start site region 151034
Tssr151035 18 50398615 to 50398621 6 + TSS region transcription start site region 151035
Pudp 18 50567656 to 50568699 1043 - protein coding gene pseudouridine 5-phosphatase
Tssr153302 18 50568663 to 50568706 43 - TSS region transcription start site region 153302
Tssr153303 18 50568721 to 50568730 9 - TSS region transcription start site region 153303
Tssr153304 18 50568743 to 50568746 3 - TSS region transcription start site region 153304