Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:49969803-55089829

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313 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi10038 18 49979083 to 49980340 1257 CpG island CpG island 10038
Tssr153295 18 49979232 to 49979254 22 - TSS region transcription start site region 153295
Tnfaip8 18 49979427 to 50093229 113802 + protein coding gene tumor necrosis factor, alpha-induced protein 8
Tssr150993 18 49979455 to 49979475 20 + TSS region transcription start site region 150993
Tssr150994 18 49979477 to 49979507 30 + TSS region transcription start site region 150994
Tssr150995 18 49979514 to 49979544 30 + TSS region transcription start site region 150995
Tssr150996 18 49979553 to 49979556 3 + TSS region transcription start site region 150996
Tssr153296 18 49980326 to 49980336 10 - TSS region transcription start site region 153296
Tssr150997 18 49982777 to 49982783 6 + TSS region transcription start site region 150997
Tssr150998 18 50001243 to 50001276 33 + TSS region transcription start site region 150998
Tssr153297 18 50010694 to 50010703 9 - TSS region transcription start site region 153297
Gm33335 18 50013498 to 50026256 12758 - lncRNA gene predicted gene, 33335
Tssr150999 18 50017023 to 50017037 14 + TSS region transcription start site region 150999
Tssr151000 18 50019739 to 50019748 9 + TSS region transcription start site region 151000
Tssr151001 18 50024336 to 50024345 9 + TSS region transcription start site region 151001
Tssr151002 18 50026294 to 50026297 3 + TSS region transcription start site region 151002
Tssr151003 18 50030659 to 50030683 24 + TSS region transcription start site region 151003
Tssr151004 18 50030686 to 50030745 59 + TSS region transcription start site region 151004
Tssr151005 18 50030977 to 50031043 66 + TSS region transcription start site region 151005
Tssr151006 18 50031070 to 50031088 18 + TSS region transcription start site region 151006
Cpgi10039 18 50031188 to 50031421 233 CpG island CpG island 10039
Tssr151007 18 50031296 to 50031324 28 + TSS region transcription start site region 151007
Tssr151008 18 50038832 to 50038836 4 + TSS region transcription start site region 151008
C030005K06Rik 18 50042730 to 50053844 11114 - lncRNA gene RIKEN cDNA C030005K06 gene
Tssr151009 18 50051702 to 50051717 15 + TSS region transcription start site region 151009
Cpgi10040 18 50052965 to 50053902 937 CpG island CpG island 10040
Tssr151010 18 50052997 to 50053004 7 + TSS region transcription start site region 151010
Tssr151011 18 50053014 to 50053024 10 + TSS region transcription start site region 151011
Tssr151012 18 50053394 to 50053404 10 + TSS region transcription start site region 151012
Tssr151013 18 50053436 to 50053457 21 + TSS region transcription start site region 151013
Tssr151014 18 50053466 to 50053523 57 + TSS region transcription start site region 151014
Tssr151015 18 50053541 to 50053544 3 + TSS region transcription start site region 151015
Tssr153298 18 50053648 to 50053662 14 - TSS region transcription start site region 153298
Tssr151016 18 50056983 to 50056997 14 + TSS region transcription start site region 151016
Tssr151017 18 50057105 to 50057118 13 + TSS region transcription start site region 151017
Tssr151018 18 50057240 to 50057254 14 + TSS region transcription start site region 151018
Tssr151019 18 50075810 to 50075816 6 + TSS region transcription start site region 151019
Cpgi10041 18 50083043 to 50083285 242 CpG island CpG island 10041
Tssr151020 18 50083905 to 50083909 4 + TSS region transcription start site region 151020
Tssr151021 18 50095713 to 50095718 5 + TSS region transcription start site region 151021
Cpgi10042 18 50128117 to 50128655 538 CpG island CpG island 10042
Tssr151022 18 50128200 to 50128205 5 + TSS region transcription start site region 151022
Hsd17b4 18 50128201 to 50196269 68068 + protein coding gene hydroxysteroid (17-beta) dehydrogenase 4
Tssr151023 18 50128211 to 50128267 56 + TSS region transcription start site region 151023
Tssr151024 18 50128269 to 50128333 64 + TSS region transcription start site region 151024
Tssr151025 18 50131365 to 50131369 4 + TSS region transcription start site region 151025
Cd63-ps 18 50134729 to 50135600 871 + pseudogene CD63 antigen, pseudogene
Tssr151026 18 50134750 to 50134766 16 + TSS region transcription start site region 151026
Tssr151027 18 50134820 to 50134857 37 + TSS region transcription start site region 151027
Tssr151028 18 50135003 to 50135048 45 + TSS region transcription start site region 151028
Tssr153299 18 50135235 to 50135261 26 - TSS region transcription start site region 153299
Tssr151029 18 50155517 to 50155521 4 + TSS region transcription start site region 151029
Gm33376 18 50170882 to 50181925 11043 - lncRNA gene predicted gene, 33376
Tssr153300 18 50181237 to 50181269 32 - TSS region transcription start site region 153300
Tssr151030 18 50181335 to 50181344 9 + TSS region transcription start site region 151030
Gm8529 18 50220071 to 50220815 744 - pseudogene predicted gene 8529
Gm46613 18 50220921 to 50226464 5543 + lncRNA gene predicted gene, 46613
Tssr153301 18 50224700 to 50224702 2 - TSS region transcription start site region 153301
Tssr151031 18 50278364 to 50278367 3 + TSS region transcription start site region 151031
Fam170a 18 50278369 to 50283019 4650 + protein coding gene family with sequence similarity 170, member A
Tssr151032 18 50278371 to 50278403 32 + TSS region transcription start site region 151032
Tssr151033 18 50395131 to 50395148 17 + TSS region transcription start site region 151033
Tssr151034 18 50395295 to 50395330 35 + TSS region transcription start site region 151034
Tssr151035 18 50398615 to 50398621 6 + TSS region transcription start site region 151035
Pudp 18 50567656 to 50568699 1043 - protein coding gene pseudouridine 5-phosphatase
Tssr153302 18 50568663 to 50568706 43 - TSS region transcription start site region 153302
Tssr153303 18 50568721 to 50568730 9 - TSS region transcription start site region 153303
Tssr153304 18 50568743 to 50568746 3 - TSS region transcription start site region 153304
Tssr151036 18 50715660 to 50715710 50 + TSS region transcription start site region 151036
Tssr151037 18 50728466 to 50728493 27 + TSS region transcription start site region 151037
D18Jcs9 18 50838163 to 50838449 286 DNA segment DNA segment, Chr 18, John C. Schimenti 9
Gm3815 18 51003060 to 51003787 727 + pseudogene predicted gene 3815
D18Dcr7 18 51059988 to 51060089 101 DNA segment DNA Segment, Chr 18, Derry C. Roopenian 7
Cpgi10043 18 51117324 to 51118177 853 CpG island CpG island 10043
Tssr151038 18 51117675 to 51117750 75 + TSS region transcription start site region 151038
Tssr151039 18 51117754 to 51117765 11 + TSS region transcription start site region 151039
Prr16 18 51117898 to 51304641 186743 + protein coding gene proline rich 16
Tssr151040 18 51189204 to 51189229 25 + TSS region transcription start site region 151040
Tssr151041 18 51231927 to 51231931 4 + TSS region transcription start site region 151041
Tssr151042 18 51235506 to 51235507 1 + TSS region transcription start site region 151042
Gm25739 18 51254169 to 51254275 106 - snRNA gene predicted gene, 25739
Tssr153305 18 51262801 to 51262807 6 - TSS region transcription start site region 153305
Gm41722 18 51555780 to 51566408 10628 + lncRNA gene predicted gene, 41722
Gm25785 18 51607544 to 51607668 124 - snRNA gene predicted gene, 25785
Gm4950 18 51865264 to 51865881 617 - pseudogene predicted pseudogene 4950
Gm41723 18 51936100 to 51954099 17999 + lncRNA gene predicted gene, 41723
Tssr5315 18 52056260 to 52056263 3 - TSS region transcription start site region 5315
D18Mit204 18 52128501 to 52128619 118 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 204
Gm22259 18 52154501 to 52154607 106 - snRNA gene predicted gene, 22259
Cpgi10044 18 52331386 to 52331770 384 CpG island CpG island 10044
Tssr151043 18 52331521 to 52331545 24 + TSS region transcription start site region 151043
Ftmt 18 52331536 to 52332986 1450 + protein coding gene ferritin mitochondrial
Cpgi10045 18 52465456 to 52466024 568 CpG island CpG island 10045
Tssr151044 18 52465676 to 52465710 34 + TSS region transcription start site region 151044
Srfbp1 18 52465693 to 52490738 25045 + protein coding gene serum response factor binding protein 1
Gm27026 18 52472848 to 52473739 891 - pseudogene predicted gene, 27026
Tssr151045 18 52486151 to 52486167 16 + TSS region transcription start site region 151045
Tssr153306 18 52488342 to 52488345 3 - TSS region transcription start site region 153306
Tssr151046 18 52488373 to 52488381 8 + TSS region transcription start site region 151046
Lox 18 52516069 to 52529867 13798 - protein coding gene lysyl oxidase
Tssr153307 18 52516605 to 52516631 26 - TSS region transcription start site region 153307
Tssr153308 18 52517679 to 52517686 7 - TSS region transcription start site region 153308
Tssr153309 18 52518488 to 52518502 14 - TSS region transcription start site region 153309
Tssr153310 18 52518737 to 52518741 4 - TSS region transcription start site region 153310
Tssr153311 18 52519088 to 52519109 21 - TSS region transcription start site region 153311
Pcyts6 18 52525560 to 52525779 219 QTL plasmacytoma susceptibility 6
D18Mit74 18 52525560 to 52525779 219 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 74
Tssr153312 18 52527741 to 52527764 23 - TSS region transcription start site region 153312
Tssr153313 18 52528348 to 52528385 37 - TSS region transcription start site region 153313
Cpgi10046 18 52528433 to 52529744 1311 CpG island CpG island 10046
Tssr153314 18 52528542 to 52528563 21 - TSS region transcription start site region 153314
Tssr151047 18 52528645 to 52528664 19 + TSS region transcription start site region 151047
Tssr151048 18 52528766 to 52528791 25 + TSS region transcription start site region 151048
Tssr151049 18 52528795 to 52528814 19 + TSS region transcription start site region 151049
Tssr151050 18 52529010 to 52529057 47 + TSS region transcription start site region 151050
Tssr151051 18 52529188 to 52529199 11 + TSS region transcription start site region 151051
Tssr153315 18 52529595 to 52529618 23 - TSS region transcription start site region 153315
Tssr153316 18 52529630 to 52529643 13 - TSS region transcription start site region 153316
Tssr153317 18 52529656 to 52529673 17 - TSS region transcription start site region 153317
Tssr153318 18 52529692 to 52529709 17 - TSS region transcription start site region 153318
Tssr153319 18 52529803 to 52529829 26 - TSS region transcription start site region 153319
Tssr153320 18 52529847 to 52529890 43 - TSS region transcription start site region 153320
Tssr153321 18 52529893 to 52529904 11 - TSS region transcription start site region 153321
Tssr153322 18 52529920 to 52529933 13 - TSS region transcription start site region 153322
Tssr153323 18 52530064 to 52530078 14 - TSS region transcription start site region 153323
Gm18151 18 52533614 to 52534313 699 + pseudogene predicted gene, 18151
D18Mit76 18 52550600 to 52550717 117 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 76
Tssr151052 18 52559193 to 52559198 5 + TSS region transcription start site region 151052
Tssr151053 18 52559225 to 52559245 20 + TSS region transcription start site region 151053
Gm41724 18 52563614 to 52577324 13710 + lncRNA gene predicted gene, 41724
Tssr151054 18 52565680 to 52565687 7 + TSS region transcription start site region 151054
Tssr151055 18 52615908 to 52615996 88 + TSS region transcription start site region 151055
Zfp474 18 52615915 to 52639830 23915 + protein coding gene zinc finger protein 474
Tssr151056 18 52616024 to 52616033 9 + TSS region transcription start site region 151056
Tssr151057 18 52646181 to 52646185 4 + TSS region transcription start site region 151057
Tssr151058 18 52646206 to 52646225 19 + TSS region transcription start site region 151058
1700034E13Rik 18 52646220 to 52663731 17511 + protein coding gene RIKEN cDNA 1700034E13 gene
Tssr151059 18 52693667 to 52693670 3 + TSS region transcription start site region 151059
Gykl1 18 52693679 to 52695593 1914 + protein coding gene glycerol kinase-like 1
Tssr151060 18 52693682 to 52693713 31 + TSS region transcription start site region 151060
Gm41725 18 52698927 to 52719273 20346 - lncRNA gene predicted gene, 41725
Tssr151061 18 52767695 to 52767737 42 + TSS region transcription start site region 151061
Cpgi10047 18 52767762 to 52769105 1343 CpG island CpG island 10047
Tssr151062 18 52767791 to 52767805 14 + TSS region transcription start site region 151062
Sncaip 18 52767811 to 52915935 148124 + protein coding gene synuclein, alpha interacting protein (synphilin)
Tssr151063 18 52768134 to 52768149 15 + TSS region transcription start site region 151063
Tssr151064 18 52768217 to 52768299 82 + TSS region transcription start site region 151064
Tssr151065 18 52768336 to 52768387 51 + TSS region transcription start site region 151065
Tssr151066 18 52768388 to 52768417 29 + TSS region transcription start site region 151066
Tssr151067 18 52800226 to 52800235 9 + TSS region transcription start site region 151067
Tssr151068 18 52801082 to 52801086 4 + TSS region transcription start site region 151068
Hplq2 18 52816637 to 52816637 0 QTL hot plate latency 2
Radpf4 18 52833084 to 68645706 15812622 QTL radiation pulmonary fibrosis 4
D18Mit53 18 52833084 to 52833226 142 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 53
Tssr153324 18 52891985 to 52891987 2 - TSS region transcription start site region 153324
Tssr5316 18 52906402 to 52906405 3 + TSS region transcription start site region 5316
Gm8572 18 52952450 to 52953235 785 + pseudogene predicted gene 8572
Cpgi10048 18 52952769 to 52952930 161 CpG island CpG island 10048
Tssr153325 18 53033613 to 53033645 32 - TSS region transcription start site region 153325
Tssr151069 18 53050355 to 53050357 2 + TSS region transcription start site region 151069
D18Mit138 18 53058763 to 53058876 113 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 138
D18Mit105 18 53084348 to 53084487 139 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 105
D0Nds5 18 53102695 to 53102847 152 DNA segment DNA segment, Nuffield Department of Surgery 5
Tssr151070 18 53109282 to 53109332 50 + TSS region transcription start site region 151070
Tssr151071 18 53109362 to 53109365 3 + TSS region transcription start site region 151071
Tssr5317 18 53147825 to 53147836 11 + TSS region transcription start site region 5317
Tssr151072 18 53147878 to 53147882 4 + TSS region transcription start site region 151072
D18Mit55 18 53157950 to 53158108 158 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 55
Pgis1 18 53157950 to 76826598 23668648 QTL proteoglycan induced spondylitis 1
Chlq10 18 53157950 to 53158108 158 QTL circulating hormone level QTL 10
Cpgi10049 18 53176026 to 53177215 1189 CpG island CpG island 10049
Tssr151073 18 53176299 to 53176310 11 + TSS region transcription start site region 151073
Tssr151074 18 53176345 to 53176376 31 + TSS region transcription start site region 151074
Snx2 18 53176365 to 53220860 44495 + protein coding gene sorting nexin 2
Tssr151075 18 53181872 to 53181876 4 + TSS region transcription start site region 151075
Tssr151076 18 53193137 to 53193148 11 + TSS region transcription start site region 151076
Tssr151077 18 53195189 to 53195192 3 + TSS region transcription start site region 151077
Tssr151078 18 53210329 to 53210349 20 + TSS region transcription start site region 151078
Tssr151079 18 53213883 to 53213898 15 + TSS region transcription start site region 151079
Tssr151080 18 53213905 to 53213922 17 + TSS region transcription start site region 151080
Gm1859 18 53220969 to 53239462 18493 - pseudogene predicted gene 1859
Cpgi10050 18 53245067 to 53246102 1035 CpG island CpG island 10050
Tssr151081 18 53245578 to 53245607 29 + TSS region transcription start site region 151081
Tssr151082 18 53245618 to 53245634 16 + TSS region transcription start site region 151082
Tssr151083 18 53245638 to 53245659 21 + TSS region transcription start site region 151083
Tssr151084 18 53245662 to 53245673 11 + TSS region transcription start site region 151084
Snx24 18 53245662 to 53390823 145161 + protein coding gene sorting nexing 24
Tssr151085 18 53245736 to 53245786 50 + TSS region transcription start site region 151085
Tssr153326 18 53246653 to 53246684 31 - TSS region transcription start site region 153326
Tssr153327 18 53249676 to 53249693 17 - TSS region transcription start site region 153327
Tssr151086 18 53250930 to 53250934 4 + TSS region transcription start site region 151086
Tssr151087 18 53252168 to 53252179 11 + TSS region transcription start site region 151087
Tssr151088 18 53252404 to 53252416 12 + TSS region transcription start site region 151088
Tssr151089 18 53268549 to 53268565 16 + TSS region transcription start site region 151089
Tssr151090 18 53275829 to 53275835 6 + TSS region transcription start site region 151090
Tssr151091 18 53276591 to 53276595 4 + TSS region transcription start site region 151091
Tssr151092 18 53297302 to 53297318 16 + TSS region transcription start site region 151092
Gm18887 18 53305740 to 53307120 1380 + pseudogene predicted gene, 18887
Tssr151093 18 53320976 to 53320978 2 + TSS region transcription start site region 151093
Tssr151094 18 53323375 to 53323384 9 + TSS region transcription start site region 151094