Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:49318014-50788024

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103 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm32870 18 49247777 to 49336844 89067 - lncRNA gene predicted gene, 32870
Tssr5313 18 49402438 to 49402439 1 - TSS region transcription start site region 5313
Tssr150978 18 49478948 to 49478952 4 + TSS region transcription start site region 150978
Gm18837 18 49506402 to 49507250 848 + pseudogene predicted gene, 18837
Tssr150979 18 49523286 to 49523293 7 + TSS region transcription start site region 150979
1700044K03Rik 18 49523289 to 49524440 1151 + lincRNA gene RIKEN cDNA 1700044K03 gene
Gm32958 18 49547819 to 49559491 11672 - lncRNA gene predicted gene, 32958
Gm25440 18 49581696 to 49581849 153 - snRNA gene predicted gene, 25440
Dtwd2 18 49696145 to 49755601 59456 - protein coding gene DTW domain containing 2
Tssr5314 18 49706793 to 49706796 3 + TSS region transcription start site region 5314
D18Mit137 18 49716167 to 49716292 125 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 137
Cpgi10036 18 49755213 to 49756046 833 CpG island CpG island 10036
Tssr153293 18 49755548 to 49755591 43 - TSS region transcription start site region 153293
Tssr150980 18 49755733 to 49755751 18 + TSS region transcription start site region 150980
Tssr150981 18 49755766 to 49755785 19 + TSS region transcription start site region 150981
Gm16283 18 49755794 to 49757189 1395 + lncRNA gene predicted gene 16283
Tssr153294 18 49772575 to 49772585 10 - TSS region transcription start site region 153294
Tssr150982 18 49772792 to 49772825 33 + TSS region transcription start site region 150982
1700065O20Rik 18 49803332 to 49817956 14624 - lincRNA gene RIKEN cDNA 1700065O20 gene
Cpgi10037 18 49832397 to 49833377 980 CpG island CpG island 10037
Tssr150983 18 49832592 to 49832605 13 + TSS region transcription start site region 150983
Tssr150984 18 49832622 to 49832686 64 + TSS region transcription start site region 150984
Dmxl1 18 49832670 to 49965473 132803 + protein coding gene Dmx-like 1
Tssr150985 18 49832690 to 49832699 9 + TSS region transcription start site region 150985
Tssr150986 18 49835887 to 49835915 28 + TSS region transcription start site region 150986
Tssr150987 18 49840742 to 49840747 5 + TSS region transcription start site region 150987
Tssr150988 18 49880733 to 49880746 13 + TSS region transcription start site region 150988
Tssr150989 18 49884925 to 49884934 9 + TSS region transcription start site region 150989
Tssr150990 18 49910424 to 49910439 15 + TSS region transcription start site region 150990
Tssr150991 18 49937488 to 49937495 7 + TSS region transcription start site region 150991
Tssr150992 18 49945217 to 49945227 10 + TSS region transcription start site region 150992
D18Mit24 18 49957976 to 49958154 178 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 24
Vtbt19 18 49957976 to 49958154 178 QTL vertebral trabecular bone trait 19
Cpgi10038 18 49979083 to 49980340 1257 CpG island CpG island 10038
Tssr153295 18 49979232 to 49979254 22 - TSS region transcription start site region 153295
Tnfaip8 18 49979427 to 50093229 113802 + protein coding gene tumor necrosis factor, alpha-induced protein 8
Tssr150993 18 49979455 to 49979475 20 + TSS region transcription start site region 150993
Tssr150994 18 49979477 to 49979507 30 + TSS region transcription start site region 150994
Tssr150995 18 49979514 to 49979544 30 + TSS region transcription start site region 150995
Tssr150996 18 49979553 to 49979556 3 + TSS region transcription start site region 150996
Tssr153296 18 49980326 to 49980336 10 - TSS region transcription start site region 153296
Tssr150997 18 49982777 to 49982783 6 + TSS region transcription start site region 150997
Tssr150998 18 50001243 to 50001276 33 + TSS region transcription start site region 150998
Tssr153297 18 50010694 to 50010703 9 - TSS region transcription start site region 153297
Gm33335 18 50013498 to 50026256 12758 - lncRNA gene predicted gene, 33335
Tssr150999 18 50017023 to 50017037 14 + TSS region transcription start site region 150999
Tssr151000 18 50019739 to 50019748 9 + TSS region transcription start site region 151000
Tssr151001 18 50024336 to 50024345 9 + TSS region transcription start site region 151001
Tssr151002 18 50026294 to 50026297 3 + TSS region transcription start site region 151002
Tssr151003 18 50030659 to 50030683 24 + TSS region transcription start site region 151003
Tssr151004 18 50030686 to 50030745 59 + TSS region transcription start site region 151004
Tssr151005 18 50030977 to 50031043 66 + TSS region transcription start site region 151005
Tssr151006 18 50031070 to 50031088 18 + TSS region transcription start site region 151006
Cpgi10039 18 50031188 to 50031421 233 CpG island CpG island 10039
Tssr151007 18 50031296 to 50031324 28 + TSS region transcription start site region 151007
Tssr151008 18 50038832 to 50038836 4 + TSS region transcription start site region 151008
C030005K06Rik 18 50042730 to 50053844 11114 - lncRNA gene RIKEN cDNA C030005K06 gene
Tssr151009 18 50051702 to 50051717 15 + TSS region transcription start site region 151009
Cpgi10040 18 50052965 to 50053902 937 CpG island CpG island 10040
Tssr151010 18 50052997 to 50053004 7 + TSS region transcription start site region 151010
Tssr151011 18 50053014 to 50053024 10 + TSS region transcription start site region 151011
Tssr151012 18 50053394 to 50053404 10 + TSS region transcription start site region 151012
Tssr151013 18 50053436 to 50053457 21 + TSS region transcription start site region 151013
Tssr151014 18 50053466 to 50053523 57 + TSS region transcription start site region 151014
Tssr151015 18 50053541 to 50053544 3 + TSS region transcription start site region 151015
Tssr153298 18 50053648 to 50053662 14 - TSS region transcription start site region 153298
Tssr151016 18 50056983 to 50056997 14 + TSS region transcription start site region 151016
Tssr151017 18 50057105 to 50057118 13 + TSS region transcription start site region 151017
Tssr151018 18 50057240 to 50057254 14 + TSS region transcription start site region 151018
Tssr151019 18 50075810 to 50075816 6 + TSS region transcription start site region 151019
Cpgi10041 18 50083043 to 50083285 242 CpG island CpG island 10041
Tssr151020 18 50083905 to 50083909 4 + TSS region transcription start site region 151020
Tssr151021 18 50095713 to 50095718 5 + TSS region transcription start site region 151021
Cpgi10042 18 50128117 to 50128655 538 CpG island CpG island 10042
Tssr151022 18 50128200 to 50128205 5 + TSS region transcription start site region 151022
Hsd17b4 18 50128201 to 50196269 68068 + protein coding gene hydroxysteroid (17-beta) dehydrogenase 4
Tssr151023 18 50128211 to 50128267 56 + TSS region transcription start site region 151023
Tssr151024 18 50128269 to 50128333 64 + TSS region transcription start site region 151024
Tssr151025 18 50131365 to 50131369 4 + TSS region transcription start site region 151025
Cd63-ps 18 50134729 to 50135600 871 + pseudogene CD63 antigen, pseudogene
Tssr151026 18 50134750 to 50134766 16 + TSS region transcription start site region 151026
Tssr151027 18 50134820 to 50134857 37 + TSS region transcription start site region 151027
Tssr151028 18 50135003 to 50135048 45 + TSS region transcription start site region 151028
Tssr153299 18 50135235 to 50135261 26 - TSS region transcription start site region 153299
Tssr151029 18 50155517 to 50155521 4 + TSS region transcription start site region 151029
Gm33376 18 50170882 to 50181925 11043 - lncRNA gene predicted gene, 33376
Tssr153300 18 50181237 to 50181269 32 - TSS region transcription start site region 153300
Tssr151030 18 50181335 to 50181344 9 + TSS region transcription start site region 151030
Gm8529 18 50220071 to 50220815 744 - pseudogene predicted gene 8529
Gm46613 18 50220921 to 50226464 5543 + lncRNA gene predicted gene, 46613
Tssr153301 18 50224700 to 50224702 2 - TSS region transcription start site region 153301
Tssr151031 18 50278364 to 50278367 3 + TSS region transcription start site region 151031
Fam170a 18 50278369 to 50283019 4650 + protein coding gene family with sequence similarity 170, member A
Tssr151032 18 50278371 to 50278403 32 + TSS region transcription start site region 151032
Tssr151033 18 50395131 to 50395148 17 + TSS region transcription start site region 151033
Tssr151034 18 50395295 to 50395330 35 + TSS region transcription start site region 151034
Tssr151035 18 50398615 to 50398621 6 + TSS region transcription start site region 151035
Pudp 18 50567656 to 50568699 1043 - protein coding gene pseudouridine 5-phosphatase
Tssr153302 18 50568663 to 50568706 43 - TSS region transcription start site region 153302
Tssr153303 18 50568721 to 50568730 9 - TSS region transcription start site region 153303
Tssr153304 18 50568743 to 50568746 3 - TSS region transcription start site region 153304
Tssr151036 18 50715660 to 50715710 50 + TSS region transcription start site region 151036
Tssr151037 18 50728466 to 50728493 27 + TSS region transcription start site region 151037