Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:47307841-48722980

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38 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sema6a 18 47245254 to 47369213 123959 - protein coding gene sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
Tssr153281 18 47321613 to 47321618 5 - TSS region transcription start site region 153281
Tssr150974 18 47331460 to 47331469 9 + TSS region transcription start site region 150974
Tssr153282 18 47333291 to 47333306 15 - TSS region transcription start site region 153282
Tssr153283 18 47333311 to 47333373 62 - TSS region transcription start site region 153283
D18Mit179 18 47366148 to 47366232 84 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 179
Cpgi10033 18 47366318 to 47369257 2939 CpG island CpG island 10033
Tssr153284 18 47368481 to 47368486 5 - TSS region transcription start site region 153284
Tssr153285 18 47368690 to 47368707 17 - TSS region transcription start site region 153285
Tssr153286 18 47368858 to 47368878 20 - TSS region transcription start site region 153286
Tssr153287 18 47368880 to 47368896 16 - TSS region transcription start site region 153287
Tssr153288 18 47368908 to 47368933 25 - TSS region transcription start site region 153288
Tssr5310 18 47368963 to 47368970 7 - TSS region transcription start site region 5310
Tssr153289 18 47369068 to 47369089 21 - TSS region transcription start site region 153289
Tssr153290 18 47369130 to 47369149 19 - TSS region transcription start site region 153290
Cpgi10034 18 47369769 to 47370091 322 CpG island CpG island 10034
Cpgi10035 18 47370349 to 47370721 372 CpG island CpG island 10035
Gm6883 18 47414465 to 47415361 896 - pseudogene predicted gene 6883
Tssr153291 18 47415380 to 47415388 8 - TSS region transcription start site region 153291
Gm50086 18 47433781 to 47437778 3997 - lincRNA gene predicted gene, 50086
9130209A04Rik 18 47452668 to 47470868 18200 + lncRNA gene RIKEN cDNA 9130209A04 gene
Gm5095 18 47537735 to 47718636 180901 + lncRNA gene predicted gene 5095
Gm32660 18 47604663 to 47635735 31072 + lncRNA gene predicted gene, 32660
Gm5236 18 47729720 to 47730352 632 + pseudogene predicted gene 5236
Gm41720 18 47733114 to 47744921 11807 + lncRNA gene predicted gene, 41720
Gm4146 18 47761088 to 47761874 786 - unclassified gene predicted gene 4146
Tssr5311 18 47901683 to 47901700 17 + TSS region transcription start site region 5311
G630055G22Rik 18 47922841 to 48107980 185139 + lncRNA gene RIKEN cDNA G630055G22 gene
Tssr150975 18 48045329 to 48045348 19 + TSS region transcription start site region 150975
Eno1b 18 48045335 to 48048378 3043 + protein coding gene enolase 1B, retrotransposed
Tssr150976 18 48045354 to 48045355 1 + TSS region transcription start site region 150976
Tssr150977 18 48046645 to 48046646 1 + TSS region transcription start site region 150977
Gm5237 18 48068322 to 48070052 1730 - pseudogene predicted gene 5237
D18Mit73 18 48186960 to 48187223 263 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 73
Gm41721 18 48240554 to 48306230 65676 + lncRNA gene predicted gene, 41721
Tssr153292 18 48444416 to 48444418 2 - TSS region transcription start site region 153292
Tssr5312 18 48586403 to 48586406 3 + TSS region transcription start site region 5312
Gm5839 18 48626704 to 48627710 1006 + pseudogene predicted gene 5839