Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:46565002-47135737

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ticam2 18 46559155 to 46574533 15378 - protein coding gene toll-like receptor adaptor molecule 2
Tssr153244 18 46572928 to 46572941 13 - TSS region transcription start site region 153244
Tssr153245 18 46572945 to 46572957 12 - TSS region transcription start site region 153245
Tssr153246 18 46572958 to 46573000 42 - TSS region transcription start site region 153246
Cpgi10024 18 46573999 to 46574571 572 CpG island CpG island 10024
Tssr153247 18 46574300 to 46574311 11 - TSS region transcription start site region 153247
Tssr153248 18 46574319 to 46574328 9 - TSS region transcription start site region 153248
Tssr153249 18 46574451 to 46574462 11 - TSS region transcription start site region 153249
Tssr153250 18 46574469 to 46574488 19 - TSS region transcription start site region 153250
Tssr153251 18 46574491 to 46574503 12 - TSS region transcription start site region 153251
Tssr153252 18 46574504 to 46574518 14 - TSS region transcription start site region 153252
Gm18606 18 46575832 to 46576345 513 - pseudogene predicted gene, 18606
Tmed7 18 46585928 to 46597535 11607 - protein coding gene transmembrane p24 trafficking protein 7
Cpgi10025 18 46596991 to 46598368 1377 CpG island CpG island 10025
Tssr153253 18 46597299 to 46597347 48 - TSS region transcription start site region 153253
Tssr153254 18 46597459 to 46597470 11 - TSS region transcription start site region 153254
Tssr153255 18 46597480 to 46597543 63 - TSS region transcription start site region 153255
Tssr150952 18 46597698 to 46597765 67 + TSS region transcription start site region 150952
Eif1a 18 46597704 to 46610225 12521 + protein coding gene eukaryotic translation initiation factor 1A
Tssr150953 18 46598533 to 46598613 80 + TSS region transcription start site region 150953
Tssr150954 18 46598619 to 46598642 23 + TSS region transcription start site region 150954
Tssr150955 18 46601975 to 46601990 15 + TSS region transcription start site region 150955
Tssr150956 18 46609278 to 46609282 4 + TSS region transcription start site region 150956
Tssr153256 18 46612228 to 46612240 12 - TSS region transcription start site region 153256
Tssr153257 18 46613005 to 46613019 14 - TSS region transcription start site region 153257
Gm41719 18 46614579 to 46618344 3765 + lncRNA gene predicted gene, 41719
Gm3734 18 46630676 to 46641603 10927 + lncRNA gene predicted gene 3734
Tssr150957 18 46630908 to 46630914 6 + TSS region transcription start site region 150957
Tssr153258 18 46636328 to 46636333 5 - TSS region transcription start site region 153258
D18Mit56 18 46644294 to 46644544 250 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 56
Tssr153259 18 46673468 to 46673472 4 - TSS region transcription start site region 153259
Cdo1 18 46713193 to 46728395 15202 - protein coding gene cysteine dioxygenase 1, cytosolic
Tssr153260 18 46713409 to 46713412 3 - TSS region transcription start site region 153260
Tssr153261 18 46713569 to 46713572 3 - TSS region transcription start site region 153261
Tssr153262 18 46715732 to 46715750 18 - TSS region transcription start site region 153262
Tssr153263 18 46717094 to 46717117 23 - TSS region transcription start site region 153263
Tssr153264 18 46726929 to 46726931 2 - TSS region transcription start site region 153264
Cpgi10026 18 46727735 to 46728556 821 CpG island CpG island 10026
Tssr153265 18 46728347 to 46728363 16 - TSS region transcription start site region 153265
Atg12 18 46732417 to 46741839 9422 - protein coding gene autophagy related 12
Tssr150958 18 46741001 to 46741016 15 + TSS region transcription start site region 150958
Cpgi10027 18 46741205 to 46742581 1376 CpG island CpG island 10027
Tssr153266 18 46741512 to 46741524 12 - TSS region transcription start site region 153266
Tssr153267 18 46741544 to 46741584 40 - TSS region transcription start site region 153267
Tssr150959 18 46741852 to 46741900 48 + TSS region transcription start site region 150959
Ap3s1 18 46741876 to 46790826 48950 + protein coding gene adaptor-related protein complex 3, sigma 1 subunit
Tssr150960 18 46741903 to 46741930 27 + TSS region transcription start site region 150960
Tssr150961 18 46742845 to 46742892 47 + TSS region transcription start site region 150961
A430019L02Rik 18 46758556 to 46761976 3420 unclassified gene RIKEN cDNA A430019L02 gene
Gm49971 18 46765214 to 46770108 4894 + unclassified gene predicted gene, 49971
Gm49972 18 46771325 to 46773071 1746 + unclassified gene predicted gene, 49972
Cpgi10028 18 46850002 to 46850737 735 CpG island CpG island 10028
Tssr150962 18 46850034 to 46850059 25 + TSS region transcription start site region 150962
Lvrn 18 46850038 to 46907242 57204 + protein coding gene laeverin
Tssr153268 18 46864031 to 46864047 16 - TSS region transcription start site region 153268
Gm23610 18 46900801 to 46900907 106 + snRNA gene predicted gene, 23610
Tssr150963 18 46906972 to 46906980 8 + TSS region transcription start site region 150963
Gm49973 18 46908558 to 46908925 367 - pseudogene predicted gene, 49973
Tssr150964 18 46918889 to 46918911 22 + TSS region transcription start site region 150964
Tssr150965 18 46921797 to 46921836 39 + TSS region transcription start site region 150965
Arl14epl 18 46921812 to 46934222 12410 + protein coding gene ADP-ribosylation factor-like 14 effector protein-like
Tssr150966 18 46921842 to 46921852 10 + TSS region transcription start site region 150966
Tssr150967 18 46931761 to 46931794 33 + TSS region transcription start site region 150967
Gm3744 18 46941807 to 46942176 369 - pseudogene predicted gene 3744
Gm49974 18 46952563 to 46958680 6117 - bidirectional promoter lncRNA gene predicted gene, 49974
Cpgi10029 18 46958595 to 46959262 667 CpG island CpG island 10029
Commd10 18 46958783 to 47087995 129212 + protein coding gene COMM domain containing 10
Tssr150968 18 46958842 to 46958889 47 + TSS region transcription start site region 150968
Tssr153269 18 46959036 to 46959045 9 - TSS region transcription start site region 153269
Tssr150969 18 46959607 to 46959613 6 + TSS region transcription start site region 150969
Gm22791 18 46985337 to 46985481 144 - snoRNA gene predicted gene, 22791
Tssr150970 18 47040594 to 47040598 4 + TSS region transcription start site region 150970
Tssr150971 18 47056053 to 47056071 18 + TSS region transcription start site region 150971
Tssr153270 18 47070889 to 47070891 2 - TSS region transcription start site region 153270
V125Dq12 18 47100000 to 47100000 0 QTL vitamin D active form serum level QTL 12
Tssr150972 18 47112137 to 47112149 12 + TSS region transcription start site region 150972
Hspe1-rs1 18 47112139 to 47112653 514 + pseudogene heat shock protein 1 (chaperonin 10), related sequence 1
Tssr153271 18 47112349 to 47112361 12 - TSS region transcription start site region 153271
Gm8468 18 47116576 to 47117365 789 + pseudogene predicted gene 8468