Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:46330594-47750598

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167 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
baw 18 21513305 to 46408598 24895293 heritable phenotypic marker black and white
Gre1 18 43408013 to 46403932 2995919 QTL Glucocorticoid receptor expression 1
Tssr150945 18 46337294 to 46337303 9 + TSS region transcription start site region 150945
4930415P13Rik 18 46339895 to 46340428 533 unclassified gene RIKEN cDNA 4930415P13 gene
Gm32288 18 46351446 to 46491048 139602 - lncRNA gene predicted gene, 32288
Gm4840 18 46355324 to 46356967 1643 - pseudogene predicted gene 4840
Cpgi10020 18 46356580 to 46357013 433 CpG island CpG island 10020
Tssr153225 18 46357132 to 46357144 12 - TSS region transcription start site region 153225
Gm4107 18 46357871 to 46427042 69171 unclassified gene predicted gene 4107
Gm32339 18 46358887 to 46380566 21679 + lncRNA gene predicted gene, 32339
Gm24617 18 46367365 to 46367485 120 + miRNA gene predicted gene, 24617
D18Mit58 18 46403749 to 46403932 183 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 58
Tssr150946 18 46404944 to 46404958 14 + TSS region transcription start site region 150946
D18Mit178 18 46408479 to 46408598 119 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 178
Sstapa1 18 46408479 to 57457636 11049157 QTL suseptibility to Staphylococcus aureus infection 1
Tssr153226 18 46447640 to 46447642 2 - TSS region transcription start site region 153226
Tssr153227 18 46447688 to 46447729 41 - TSS region transcription start site region 153227
Mospd4 18 46465215 to 46465790 575 - pseudogene motile sperm domain containing 4
Cpgi10021 18 46465248 to 46465920 672 CpG island CpG island 10021
Tssr153228 18 46465780 to 46465819 39 - TSS region transcription start site region 153228
Gm24076 18 46473931 to 46474024 93 - snRNA gene predicted gene, 24076
Tssr150947 18 46474071 to 46474072 1 + TSS region transcription start site region 150947
Tssr150948 18 46474938 to 46474959 21 + TSS region transcription start site region 150948
Tssr153229 18 46476841 to 46476849 8 - TSS region transcription start site region 153229
Gm3720 18 46493714 to 46497965 4251 + pseudogene predicted gene 3720
Tssr153230 18 46504010 to 46504046 36 - TSS region transcription start site region 153230
Fem1c 18 46504606 to 46525971 21365 - protein coding gene fem-1 homolog c (C.elegans)
Tssr150949 18 46515916 to 46515925 9 + TSS region transcription start site region 150949
Tssr153231 18 46522126 to 46522133 7 - TSS region transcription start site region 153231
Tssr153232 18 46522196 to 46522200 4 - TSS region transcription start site region 153232
Cpgi10022 18 46524357 to 46524635 278 CpG island CpG island 10022
Cpgi10023 18 46524965 to 46526534 1569 CpG island CpG island 10023
Tssr153233 18 46525017 to 46525052 35 - TSS region transcription start site region 153233
Tssr153234 18 46525077 to 46525086 9 - TSS region transcription start site region 153234
Tssr150950 18 46525152 to 46525192 40 + TSS region transcription start site region 150950
Tssr150951 18 46525199 to 46525232 33 + TSS region transcription start site region 150951
Tssr5309 18 46525336 to 46525365 29 - TSS region transcription start site region 5309
Tssr153235 18 46525751 to 46525764 13 - TSS region transcription start site region 153235
Tssr153236 18 46525772 to 46525783 11 - TSS region transcription start site region 153236
Tssr153237 18 46525851 to 46525871 20 - TSS region transcription start site region 153237
Tssr153238 18 46525940 to 46525999 59 - TSS region transcription start site region 153238
Tssr153239 18 46526002 to 46526009 7 - TSS region transcription start site region 153239
Tssr153240 18 46526022 to 46526027 5 - TSS region transcription start site region 153240
Tssr153241 18 46526035 to 46526046 11 - TSS region transcription start site region 153241
Tssr153242 18 46526048 to 46526055 7 - TSS region transcription start site region 153242
Bmd16 18 46534847 to 46534993 146 QTL bone mineral density 16
D18Mit36 18 46534847 to 46534993 146 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 36
Tssr153243 18 46557912 to 46557933 21 - TSS region transcription start site region 153243
Ticam2 18 46559155 to 46574533 15378 - protein coding gene toll-like receptor adaptor molecule 2
Tssr153244 18 46572928 to 46572941 13 - TSS region transcription start site region 153244
Tssr153245 18 46572945 to 46572957 12 - TSS region transcription start site region 153245
Tssr153246 18 46572958 to 46573000 42 - TSS region transcription start site region 153246
Cpgi10024 18 46573999 to 46574571 572 CpG island CpG island 10024
Tssr153247 18 46574300 to 46574311 11 - TSS region transcription start site region 153247
Tssr153248 18 46574319 to 46574328 9 - TSS region transcription start site region 153248
Tssr153249 18 46574451 to 46574462 11 - TSS region transcription start site region 153249
Tssr153250 18 46574469 to 46574488 19 - TSS region transcription start site region 153250
Tssr153251 18 46574491 to 46574503 12 - TSS region transcription start site region 153251
Tssr153252 18 46574504 to 46574518 14 - TSS region transcription start site region 153252
Gm18606 18 46575832 to 46576345 513 - pseudogene predicted gene, 18606
Tmed7 18 46585928 to 46597535 11607 - protein coding gene transmembrane p24 trafficking protein 7
Cpgi10025 18 46596991 to 46598368 1377 CpG island CpG island 10025
Tssr153253 18 46597299 to 46597347 48 - TSS region transcription start site region 153253
Tssr153254 18 46597459 to 46597470 11 - TSS region transcription start site region 153254
Tssr153255 18 46597480 to 46597543 63 - TSS region transcription start site region 153255
Tssr150952 18 46597698 to 46597765 67 + TSS region transcription start site region 150952
Eif1a 18 46597704 to 46610225 12521 + protein coding gene eukaryotic translation initiation factor 1A
Tssr150953 18 46598533 to 46598613 80 + TSS region transcription start site region 150953
Tssr150954 18 46598619 to 46598642 23 + TSS region transcription start site region 150954
Tssr150955 18 46601975 to 46601990 15 + TSS region transcription start site region 150955
Tssr150956 18 46609278 to 46609282 4 + TSS region transcription start site region 150956
Tssr153256 18 46612228 to 46612240 12 - TSS region transcription start site region 153256
Tssr153257 18 46613005 to 46613019 14 - TSS region transcription start site region 153257
Gm41719 18 46614579 to 46618344 3765 + lncRNA gene predicted gene, 41719
Gm3734 18 46630676 to 46641603 10927 + lncRNA gene predicted gene 3734
Tssr150957 18 46630908 to 46630914 6 + TSS region transcription start site region 150957
Tssr153258 18 46636328 to 46636333 5 - TSS region transcription start site region 153258
D18Mit56 18 46644294 to 46644544 250 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 56
Tssr153259 18 46673468 to 46673472 4 - TSS region transcription start site region 153259
Cdo1 18 46713193 to 46728395 15202 - protein coding gene cysteine dioxygenase 1, cytosolic
Tssr153260 18 46713409 to 46713412 3 - TSS region transcription start site region 153260
Tssr153261 18 46713569 to 46713572 3 - TSS region transcription start site region 153261
Tssr153262 18 46715732 to 46715750 18 - TSS region transcription start site region 153262
Tssr153263 18 46717094 to 46717117 23 - TSS region transcription start site region 153263
Tssr153264 18 46726929 to 46726931 2 - TSS region transcription start site region 153264
Cpgi10026 18 46727735 to 46728556 821 CpG island CpG island 10026
Tssr153265 18 46728347 to 46728363 16 - TSS region transcription start site region 153265
Atg12 18 46732417 to 46741839 9422 - protein coding gene autophagy related 12
Tssr150958 18 46741001 to 46741016 15 + TSS region transcription start site region 150958
Cpgi10027 18 46741205 to 46742581 1376 CpG island CpG island 10027
Tssr153266 18 46741512 to 46741524 12 - TSS region transcription start site region 153266
Tssr153267 18 46741544 to 46741584 40 - TSS region transcription start site region 153267
Tssr150959 18 46741852 to 46741900 48 + TSS region transcription start site region 150959
Ap3s1 18 46741876 to 46790826 48950 + protein coding gene adaptor-related protein complex 3, sigma 1 subunit
Tssr150960 18 46741903 to 46741930 27 + TSS region transcription start site region 150960
Tssr150961 18 46742845 to 46742892 47 + TSS region transcription start site region 150961
A430019L02Rik 18 46758556 to 46761976 3420 unclassified gene RIKEN cDNA A430019L02 gene
Gm49971 18 46765214 to 46770108 4894 + unclassified gene predicted gene, 49971
Gm49972 18 46771325 to 46773071 1746 + unclassified gene predicted gene, 49972
Cpgi10028 18 46850002 to 46850737 735 CpG island CpG island 10028
Tssr150962 18 46850034 to 46850059 25 + TSS region transcription start site region 150962
Lvrn 18 46850038 to 46907242 57204 + protein coding gene laeverin
Tssr153268 18 46864031 to 46864047 16 - TSS region transcription start site region 153268
Gm23610 18 46900801 to 46900907 106 + snRNA gene predicted gene, 23610
Tssr150963 18 46906972 to 46906980 8 + TSS region transcription start site region 150963
Gm49973 18 46908558 to 46908925 367 - pseudogene predicted gene, 49973
Tssr150964 18 46918889 to 46918911 22 + TSS region transcription start site region 150964
Tssr150965 18 46921797 to 46921836 39 + TSS region transcription start site region 150965
Arl14epl 18 46921812 to 46934222 12410 + protein coding gene ADP-ribosylation factor-like 14 effector protein-like
Tssr150966 18 46921842 to 46921852 10 + TSS region transcription start site region 150966
Tssr150967 18 46931761 to 46931794 33 + TSS region transcription start site region 150967
Gm3744 18 46941807 to 46942176 369 - pseudogene predicted gene 3744
Gm49974 18 46952563 to 46958680 6117 - bidirectional promoter lncRNA gene predicted gene, 49974
Cpgi10029 18 46958595 to 46959262 667 CpG island CpG island 10029
Commd10 18 46958783 to 47087995 129212 + protein coding gene COMM domain containing 10
Tssr150968 18 46958842 to 46958889 47 + TSS region transcription start site region 150968
Tssr153269 18 46959036 to 46959045 9 - TSS region transcription start site region 153269
Tssr150969 18 46959607 to 46959613 6 + TSS region transcription start site region 150969
Gm22791 18 46985337 to 46985481 144 - snoRNA gene predicted gene, 22791
Tssr150970 18 47040594 to 47040598 4 + TSS region transcription start site region 150970
Tssr150971 18 47056053 to 47056071 18 + TSS region transcription start site region 150971
Tssr153270 18 47070889 to 47070891 2 - TSS region transcription start site region 153270
V125Dq12 18 47100000 to 47100000 0 QTL vitamin D active form serum level QTL 12
Tssr150972 18 47112137 to 47112149 12 + TSS region transcription start site region 150972
Hspe1-rs1 18 47112139 to 47112653 514 + pseudogene heat shock protein 1 (chaperonin 10), related sequence 1
Tssr153271 18 47112349 to 47112361 12 - TSS region transcription start site region 153271
Gm8468 18 47116576 to 47117365 789 + pseudogene predicted gene 8468
Cpgi10030 18 47151138 to 47151467 329 CpG island CpG island 10030
Cpgi10031 18 47154126 to 47154282 156 CpG island CpG island 10031
Gm49975 18 47154189 to 47156186 1997 + unclassified gene predicted gene, 49975
Gm25036 18 47154373 to 47154422 49 + miRNA gene predicted gene, 25036
Tssr150973 18 47155036 to 47155040 4 + TSS region transcription start site region 150973
Sema6a 18 47245254 to 47369213 123959 - protein coding gene sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
Tssr153272 18 47247889 to 47247903 14 - TSS region transcription start site region 153272
Tssr153273 18 47248050 to 47248073 23 - TSS region transcription start site region 153273
Tssr153274 18 47248086 to 47248106 20 - TSS region transcription start site region 153274
Tssr153275 18 47248119 to 47248152 33 - TSS region transcription start site region 153275
Tssr153276 18 47248183 to 47248202 19 - TSS region transcription start site region 153276
Tssr153277 18 47248253 to 47248272 19 - TSS region transcription start site region 153277
Tssr153278 18 47248334 to 47248345 11 - TSS region transcription start site region 153278
Cpgi10032 18 47248484 to 47249579 1095 CpG island CpG island 10032
Tssr153279 18 47275756 to 47275764 8 - TSS region transcription start site region 153279
Tssr153280 18 47306462 to 47306482 20 - TSS region transcription start site region 153280
Tssr153281 18 47321613 to 47321618 5 - TSS region transcription start site region 153281
Tssr150974 18 47331460 to 47331469 9 + TSS region transcription start site region 150974
Tssr153282 18 47333291 to 47333306 15 - TSS region transcription start site region 153282
Tssr153283 18 47333311 to 47333373 62 - TSS region transcription start site region 153283
D18Mit179 18 47366148 to 47366232 84 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 179
Cpgi10033 18 47366318 to 47369257 2939 CpG island CpG island 10033
Tssr153284 18 47368481 to 47368486 5 - TSS region transcription start site region 153284
Tssr153285 18 47368690 to 47368707 17 - TSS region transcription start site region 153285
Tssr153286 18 47368858 to 47368878 20 - TSS region transcription start site region 153286
Tssr153287 18 47368880 to 47368896 16 - TSS region transcription start site region 153287
Tssr153288 18 47368908 to 47368933 25 - TSS region transcription start site region 153288
Tssr5310 18 47368963 to 47368970 7 - TSS region transcription start site region 5310
Tssr153289 18 47369068 to 47369089 21 - TSS region transcription start site region 153289
Tssr153290 18 47369130 to 47369149 19 - TSS region transcription start site region 153290
Cpgi10034 18 47369769 to 47370091 322 CpG island CpG island 10034
Cpgi10035 18 47370349 to 47370721 372 CpG island CpG island 10035
Gm6883 18 47414465 to 47415361 896 - pseudogene predicted gene 6883
Tssr153291 18 47415380 to 47415388 8 - TSS region transcription start site region 153291
Gm50086 18 47433781 to 47437778 3997 - lincRNA gene predicted gene, 50086
9130209A04Rik 18 47452668 to 47470868 18200 + lncRNA gene RIKEN cDNA 9130209A04 gene
Gm5095 18 47537735 to 47718636 180901 + lncRNA gene predicted gene 5095
Gm32660 18 47604663 to 47635735 31072 + lncRNA gene predicted gene, 32660
Gm5236 18 47729720 to 47730352 632 + pseudogene predicted gene 5236
Gm41720 18 47733114 to 47744921 11807 + lncRNA gene predicted gene, 41720