Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:46039319-47109328

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153 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
baw 18 21513305 to 46408598 24895293 heritable phenotypic marker black and white
Gre1 18 43408013 to 46403932 2995919 QTL Glucocorticoid receptor expression 1
Tssr5308 18 46074939 to 46074942 3 + TSS region transcription start site region 5308
Gm38337 18 46112661 to 46113259 598 - unclassified gene predicted gene, 38337
Tssr153209 18 46141574 to 46141599 25 - TSS region transcription start site region 153209
Tssr153210 18 46141641 to 46141648 7 - TSS region transcription start site region 153210
Tssr153211 18 46161743 to 46161752 9 - TSS region transcription start site region 153211
Trim36 18 46165302 to 46212607 47305 - protein coding gene tripartite motif-containing 36
Tssr153212 18 46175997 to 46176015 18 - TSS region transcription start site region 153212
Tssr150942 18 46176591 to 46176594 3 + TSS region transcription start site region 150942
Tssr153213 18 46179920 to 46179968 48 - TSS region transcription start site region 153213
Cpgi10016 18 46198143 to 46199660 1517 CpG island CpG island 10016
Tssr153214 18 46198810 to 46198824 14 - TSS region transcription start site region 153214
Tssr153215 18 46198838 to 46198863 25 - TSS region transcription start site region 153215
1700018A14Rik 18 46199021 to 46199731 710 + unclassified gene RIKEN cDNA 1700018A14 gene
Cpgi10017 18 46211743 to 46212798 1055 CpG island CpG island 10017
Tssr153216 18 46212451 to 46212461 10 - TSS region transcription start site region 153216
Tssr153217 18 46212569 to 46212590 21 - TSS region transcription start site region 153217
Tssr153218 18 46212595 to 46212634 39 - TSS region transcription start site region 153218
Tssr153219 18 46212813 to 46212821 8 - TSS region transcription start site region 153219
Tssr150943 18 46226026 to 46226034 8 + TSS region transcription start site region 150943
Tssr150944 18 46227080 to 46227092 12 + TSS region transcription start site region 150944
Tssr153220 18 46237859 to 46237879 20 - TSS region transcription start site region 153220
Pggt1b 18 46239949 to 46280850 40901 - protein coding gene protein geranylgeranyltransferase type I, beta subunit
Cpgi10018 18 46280357 to 46280994 637 CpG island CpG island 10018
Tssr153221 18 46280820 to 46280841 21 - TSS region transcription start site region 153221
Ccdc112 18 46282151 to 46311928 29777 - protein coding gene coiled-coil domain containing 112
n-TTcgt1 18 46286429 to 46286500 71 - tRNA gene nuclear encoded tRNA threonine 1 (anticodon CGT)
Cpgi10019 18 46311347 to 46312161 814 CpG island CpG island 10019
Tssr153222 18 46311811 to 46311834 23 - TSS region transcription start site region 153222
Tssr153223 18 46311858 to 46311871 13 - TSS region transcription start site region 153223
Tssr153224 18 46311891 to 46311926 35 - TSS region transcription start site region 153224
Tssr150945 18 46337294 to 46337303 9 + TSS region transcription start site region 150945
4930415P13Rik 18 46339895 to 46340428 533 unclassified gene RIKEN cDNA 4930415P13 gene
Gm32288 18 46351446 to 46491048 139602 - lncRNA gene predicted gene, 32288
Gm4840 18 46355324 to 46356967 1643 - pseudogene predicted gene 4840
Cpgi10020 18 46356580 to 46357013 433 CpG island CpG island 10020
Tssr153225 18 46357132 to 46357144 12 - TSS region transcription start site region 153225
Gm4107 18 46357871 to 46427042 69171 unclassified gene predicted gene 4107
Gm32339 18 46358887 to 46380566 21679 + lncRNA gene predicted gene, 32339
Gm24617 18 46367365 to 46367485 120 + miRNA gene predicted gene, 24617
D18Mit58 18 46403749 to 46403932 183 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 58
Tssr150946 18 46404944 to 46404958 14 + TSS region transcription start site region 150946
D18Mit178 18 46408479 to 46408598 119 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 178
Sstapa1 18 46408479 to 57457636 11049157 QTL suseptibility to Staphylococcus aureus infection 1
Tssr153226 18 46447640 to 46447642 2 - TSS region transcription start site region 153226
Tssr153227 18 46447688 to 46447729 41 - TSS region transcription start site region 153227
Mospd4 18 46465215 to 46465790 575 - pseudogene motile sperm domain containing 4
Cpgi10021 18 46465248 to 46465920 672 CpG island CpG island 10021
Tssr153228 18 46465780 to 46465819 39 - TSS region transcription start site region 153228
Gm24076 18 46473931 to 46474024 93 - snRNA gene predicted gene, 24076
Tssr150947 18 46474071 to 46474072 1 + TSS region transcription start site region 150947
Tssr150948 18 46474938 to 46474959 21 + TSS region transcription start site region 150948
Tssr153229 18 46476841 to 46476849 8 - TSS region transcription start site region 153229
Gm3720 18 46493714 to 46497965 4251 + pseudogene predicted gene 3720
Tssr153230 18 46504010 to 46504046 36 - TSS region transcription start site region 153230
Fem1c 18 46504606 to 46525971 21365 - protein coding gene fem-1 homolog c (C.elegans)
Tssr150949 18 46515916 to 46515925 9 + TSS region transcription start site region 150949
Tssr153231 18 46522126 to 46522133 7 - TSS region transcription start site region 153231
Tssr153232 18 46522196 to 46522200 4 - TSS region transcription start site region 153232
Cpgi10022 18 46524357 to 46524635 278 CpG island CpG island 10022
Cpgi10023 18 46524965 to 46526534 1569 CpG island CpG island 10023
Tssr153233 18 46525017 to 46525052 35 - TSS region transcription start site region 153233
Tssr153234 18 46525077 to 46525086 9 - TSS region transcription start site region 153234
Tssr150950 18 46525152 to 46525192 40 + TSS region transcription start site region 150950
Tssr150951 18 46525199 to 46525232 33 + TSS region transcription start site region 150951
Tssr5309 18 46525336 to 46525365 29 - TSS region transcription start site region 5309
Tssr153235 18 46525751 to 46525764 13 - TSS region transcription start site region 153235
Tssr153236 18 46525772 to 46525783 11 - TSS region transcription start site region 153236
Tssr153237 18 46525851 to 46525871 20 - TSS region transcription start site region 153237
Tssr153238 18 46525940 to 46525999 59 - TSS region transcription start site region 153238
Tssr153239 18 46526002 to 46526009 7 - TSS region transcription start site region 153239
Tssr153240 18 46526022 to 46526027 5 - TSS region transcription start site region 153240
Tssr153241 18 46526035 to 46526046 11 - TSS region transcription start site region 153241
Tssr153242 18 46526048 to 46526055 7 - TSS region transcription start site region 153242
Bmd16 18 46534847 to 46534993 146 QTL bone mineral density 16
D18Mit36 18 46534847 to 46534993 146 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 36
Tssr153243 18 46557912 to 46557933 21 - TSS region transcription start site region 153243
Ticam2 18 46559155 to 46574533 15378 - protein coding gene toll-like receptor adaptor molecule 2
Tssr153244 18 46572928 to 46572941 13 - TSS region transcription start site region 153244
Tssr153245 18 46572945 to 46572957 12 - TSS region transcription start site region 153245
Tssr153246 18 46572958 to 46573000 42 - TSS region transcription start site region 153246
Cpgi10024 18 46573999 to 46574571 572 CpG island CpG island 10024
Tssr153247 18 46574300 to 46574311 11 - TSS region transcription start site region 153247
Tssr153248 18 46574319 to 46574328 9 - TSS region transcription start site region 153248
Tssr153249 18 46574451 to 46574462 11 - TSS region transcription start site region 153249
Tssr153250 18 46574469 to 46574488 19 - TSS region transcription start site region 153250
Tssr153251 18 46574491 to 46574503 12 - TSS region transcription start site region 153251
Tssr153252 18 46574504 to 46574518 14 - TSS region transcription start site region 153252
Gm18606 18 46575832 to 46576345 513 - pseudogene predicted gene, 18606
Tmed7 18 46585928 to 46597535 11607 - protein coding gene transmembrane p24 trafficking protein 7
Cpgi10025 18 46596991 to 46598368 1377 CpG island CpG island 10025
Tssr153253 18 46597299 to 46597347 48 - TSS region transcription start site region 153253
Tssr153254 18 46597459 to 46597470 11 - TSS region transcription start site region 153254
Tssr153255 18 46597480 to 46597543 63 - TSS region transcription start site region 153255
Tssr150952 18 46597698 to 46597765 67 + TSS region transcription start site region 150952
Eif1a 18 46597704 to 46610225 12521 + protein coding gene eukaryotic translation initiation factor 1A
Tssr150953 18 46598533 to 46598613 80 + TSS region transcription start site region 150953
Tssr150954 18 46598619 to 46598642 23 + TSS region transcription start site region 150954
Tssr150955 18 46601975 to 46601990 15 + TSS region transcription start site region 150955
Tssr150956 18 46609278 to 46609282 4 + TSS region transcription start site region 150956
Tssr153256 18 46612228 to 46612240 12 - TSS region transcription start site region 153256
Tssr153257 18 46613005 to 46613019 14 - TSS region transcription start site region 153257
Gm41719 18 46614579 to 46618344 3765 + lncRNA gene predicted gene, 41719
Gm3734 18 46630676 to 46641603 10927 + lncRNA gene predicted gene 3734
Tssr150957 18 46630908 to 46630914 6 + TSS region transcription start site region 150957
Tssr153258 18 46636328 to 46636333 5 - TSS region transcription start site region 153258
D18Mit56 18 46644294 to 46644544 250 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 56
Tssr153259 18 46673468 to 46673472 4 - TSS region transcription start site region 153259
Cdo1 18 46713193 to 46728395 15202 - protein coding gene cysteine dioxygenase 1, cytosolic
Tssr153260 18 46713409 to 46713412 3 - TSS region transcription start site region 153260
Tssr153261 18 46713569 to 46713572 3 - TSS region transcription start site region 153261
Tssr153262 18 46715732 to 46715750 18 - TSS region transcription start site region 153262
Tssr153263 18 46717094 to 46717117 23 - TSS region transcription start site region 153263
Tssr153264 18 46726929 to 46726931 2 - TSS region transcription start site region 153264
Cpgi10026 18 46727735 to 46728556 821 CpG island CpG island 10026
Tssr153265 18 46728347 to 46728363 16 - TSS region transcription start site region 153265
Atg12 18 46732417 to 46741839 9422 - protein coding gene autophagy related 12
Tssr150958 18 46741001 to 46741016 15 + TSS region transcription start site region 150958
Cpgi10027 18 46741205 to 46742581 1376 CpG island CpG island 10027
Tssr153266 18 46741512 to 46741524 12 - TSS region transcription start site region 153266
Tssr153267 18 46741544 to 46741584 40 - TSS region transcription start site region 153267
Tssr150959 18 46741852 to 46741900 48 + TSS region transcription start site region 150959
Ap3s1 18 46741876 to 46790826 48950 + protein coding gene adaptor-related protein complex 3, sigma 1 subunit
Tssr150960 18 46741903 to 46741930 27 + TSS region transcription start site region 150960
Tssr150961 18 46742845 to 46742892 47 + TSS region transcription start site region 150961
A430019L02Rik 18 46758556 to 46761976 3420 unclassified gene RIKEN cDNA A430019L02 gene
Gm49971 18 46765214 to 46770108 4894 + unclassified gene predicted gene, 49971
Gm49972 18 46771325 to 46773071 1746 + unclassified gene predicted gene, 49972
Cpgi10028 18 46850002 to 46850737 735 CpG island CpG island 10028
Tssr150962 18 46850034 to 46850059 25 + TSS region transcription start site region 150962
Lvrn 18 46850038 to 46907242 57204 + protein coding gene laeverin
Tssr153268 18 46864031 to 46864047 16 - TSS region transcription start site region 153268
Gm23610 18 46900801 to 46900907 106 + snRNA gene predicted gene, 23610
Tssr150963 18 46906972 to 46906980 8 + TSS region transcription start site region 150963
Gm49973 18 46908558 to 46908925 367 - pseudogene predicted gene, 49973
Tssr150964 18 46918889 to 46918911 22 + TSS region transcription start site region 150964
Tssr150965 18 46921797 to 46921836 39 + TSS region transcription start site region 150965
Arl14epl 18 46921812 to 46934222 12410 + protein coding gene ADP-ribosylation factor-like 14 effector protein-like
Tssr150966 18 46921842 to 46921852 10 + TSS region transcription start site region 150966
Tssr150967 18 46931761 to 46931794 33 + TSS region transcription start site region 150967
Gm3744 18 46941807 to 46942176 369 - pseudogene predicted gene 3744
Gm49974 18 46952563 to 46958680 6117 - bidirectional promoter lncRNA gene predicted gene, 49974
Cpgi10029 18 46958595 to 46959262 667 CpG island CpG island 10029
Commd10 18 46958783 to 47087995 129212 + protein coding gene COMM domain containing 10
Tssr150968 18 46958842 to 46958889 47 + TSS region transcription start site region 150968
Tssr153269 18 46959036 to 46959045 9 - TSS region transcription start site region 153269
Tssr150969 18 46959607 to 46959613 6 + TSS region transcription start site region 150969
Gm22791 18 46985337 to 46985481 144 - snoRNA gene predicted gene, 22791
Tssr150970 18 47040594 to 47040598 4 + TSS region transcription start site region 150970
Tssr150971 18 47056053 to 47056071 18 + TSS region transcription start site region 150971
Tssr153270 18 47070889 to 47070891 2 - TSS region transcription start site region 153270
V125Dq12 18 47100000 to 47100000 0 QTL vitamin D active form serum level QTL 12