Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:44713092-46406119

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94 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lmr27 18 36054514 to 44976451 8921937 QTL leishmaniasis resistance 27
Gre1 18 43408013 to 46403932 2995919 QTL Glucocorticoid receptor expression 1
Mcc 18 44425060 to 44812182 387122 - protein coding gene mutated in colorectal cancers
Tssr150926 18 44811656 to 44811693 37 + TSS region transcription start site region 150926
Cpgi10011 18 44811826 to 44812509 683 CpG island CpG island 10011
Gm43425 18 44821769 to 44825059 3290 + lincRNA gene predicted gene 43425
Ythdc2 18 44827746 to 44889724 61978 + protein coding gene YTH domain containing 2
Cpgi10012 18 44828179 to 44829148 969 CpG island CpG island 10012
Tssr150927 18 44828452 to 44828470 18 + TSS region transcription start site region 150927
Tssr150928 18 44828471 to 44828536 65 + TSS region transcription start site region 150928
Tssr153204 18 44828883 to 44828894 11 - TSS region transcription start site region 153204
Tssr153205 18 44828897 to 44828933 36 - TSS region transcription start site region 153205
4833422B07Rik 18 44883072 to 44884428 1356 unclassified gene RIKEN cDNA 4833422B07 gene
Lmr13 18 44976313 to 44976451 138 QTL leishmaniasis resistance 13
D18Mit35 18 44976313 to 44976451 138 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 35
Thcr 18 44997537 to 68645706 23648169 QTL T helper cell response
D18Mit149 18 44997537 to 44997672 135 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 149
Mhysq5 18 44997537 to 44997672 135 QTL male hybrid sterility QTL 5
Gm31706 18 45044811 to 45141138 96327 + lncRNA gene predicted gene, 31706
Gm6663 18 45069664 to 45071371 1707 - pseudogene predicted gene 6663
Gm26928 18 45089326 to 45090314 988 - pseudogene predicted gene, 26928
Cpgi10013 18 45146468 to 45147168 700 CpG island CpG island 10013
Gm4839 18 45146511 to 45147126 615 - pseudogene predicted gene 4839
D18Mit180 18 45261817 to 45261926 109 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 180
Cpgi10014 18 45268283 to 45269166 883 CpG island CpG island 10014
Tssr150929 18 45268853 to 45268864 11 + TSS region transcription start site region 150929
Kcnn2 18 45268860 to 45685887 417027 + protein coding gene potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
Tssr150930 18 45268876 to 45268916 40 + TSS region transcription start site region 150930
Tssr5306 18 45268951 to 45268965 14 + TSS region transcription start site region 5306
Gm10540 18 45285833 to 45286108 275 - pseudogene predicted gene 10540
Gm18652 18 45418624 to 45419153 529 - pseudogene predicted gene, 18652
Gm31907 18 45430264 to 45510292 80028 - lncRNA gene predicted gene, 31907
Gm32139 18 45558058 to 45559285 1227 - lncRNA gene predicted gene, 32139
Cpgi10015 18 45558092 to 45561119 3027 CpG island CpG island 10015
Tssr5307 18 45559013 to 45559022 9 + TSS region transcription start site region 5307
Tssr153206 18 45559325 to 45559339 14 - TSS region transcription start site region 153206
Tssr150931 18 45559407 to 45559418 11 + TSS region transcription start site region 150931
Tssr150932 18 45559430 to 45559482 52 + TSS region transcription start site region 150932
Tssr150933 18 45559488 to 45559503 15 + TSS region transcription start site region 150933
Tssr150934 18 45559534 to 45559548 14 + TSS region transcription start site region 150934
Tssr150935 18 45559560 to 45559569 9 + TSS region transcription start site region 150935
Tssr150936 18 45559589 to 45559600 11 + TSS region transcription start site region 150936
Tssr150937 18 45559806 to 45559816 10 + TSS region transcription start site region 150937
Tssr150938 18 45559818 to 45559881 63 + TSS region transcription start site region 150938
Tssr150939 18 45559888 to 45559905 17 + TSS region transcription start site region 150939
Tssr150940 18 45559929 to 45559943 14 + TSS region transcription start site region 150940
Tssr150941 18 45593344 to 45593345 1 + TSS region transcription start site region 150941
Gm46623 18 45655355 to 45676947 21592 - lncRNA gene predicted gene, 46623
A330093E20Rik 18 45683487 to 45896509 213022 - antisense lncRNA gene RIKEN cDNA A330093E20 gene
Gm41718 18 45718472 to 45735438 16966 + lncRNA gene predicted gene, 41718
Tssr153207 18 45895586 to 45895590 4 - TSS region transcription start site region 153207
Tssr153208 18 45934312 to 45934317 5 - TSS region transcription start site region 153208
Gm26262 18 45941007 to 45941133 126 + snoRNA gene predicted gene, 26262
Tssr5308 18 46074939 to 46074942 3 + TSS region transcription start site region 5308
Gm38337 18 46112661 to 46113259 598 - unclassified gene predicted gene, 38337
Tssr153209 18 46141574 to 46141599 25 - TSS region transcription start site region 153209
Tssr153210 18 46141641 to 46141648 7 - TSS region transcription start site region 153210
Tssr153211 18 46161743 to 46161752 9 - TSS region transcription start site region 153211
Trim36 18 46165302 to 46212607 47305 - protein coding gene tripartite motif-containing 36
Tssr153212 18 46175997 to 46176015 18 - TSS region transcription start site region 153212
Tssr150942 18 46176591 to 46176594 3 + TSS region transcription start site region 150942
Tssr153213 18 46179920 to 46179968 48 - TSS region transcription start site region 153213
Cpgi10016 18 46198143 to 46199660 1517 CpG island CpG island 10016
Tssr153214 18 46198810 to 46198824 14 - TSS region transcription start site region 153214
Tssr153215 18 46198838 to 46198863 25 - TSS region transcription start site region 153215
1700018A14Rik 18 46199021 to 46199731 710 + unclassified gene RIKEN cDNA 1700018A14 gene
Cpgi10017 18 46211743 to 46212798 1055 CpG island CpG island 10017
Tssr153216 18 46212451 to 46212461 10 - TSS region transcription start site region 153216
Tssr153217 18 46212569 to 46212590 21 - TSS region transcription start site region 153217
Tssr153218 18 46212595 to 46212634 39 - TSS region transcription start site region 153218
Tssr153219 18 46212813 to 46212821 8 - TSS region transcription start site region 153219
Tssr150943 18 46226026 to 46226034 8 + TSS region transcription start site region 150943
Tssr150944 18 46227080 to 46227092 12 + TSS region transcription start site region 150944
Tssr153220 18 46237859 to 46237879 20 - TSS region transcription start site region 153220
Pggt1b 18 46239949 to 46280850 40901 - protein coding gene protein geranylgeranyltransferase type I, beta subunit
Cpgi10018 18 46280357 to 46280994 637 CpG island CpG island 10018
Tssr153221 18 46280820 to 46280841 21 - TSS region transcription start site region 153221
Ccdc112 18 46282151 to 46311928 29777 - protein coding gene coiled-coil domain containing 112
n-TTcgt1 18 46286429 to 46286500 71 - tRNA gene nuclear encoded tRNA threonine 1 (anticodon CGT)
Cpgi10019 18 46311347 to 46312161 814 CpG island CpG island 10019
Tssr153222 18 46311811 to 46311834 23 - TSS region transcription start site region 153222
Tssr153223 18 46311858 to 46311871 13 - TSS region transcription start site region 153223
Tssr153224 18 46311891 to 46311926 35 - TSS region transcription start site region 153224
Tssr150945 18 46337294 to 46337303 9 + TSS region transcription start site region 150945
4930415P13Rik 18 46339895 to 46340428 533 unclassified gene RIKEN cDNA 4930415P13 gene
Gm32288 18 46351446 to 46491048 139602 - lncRNA gene predicted gene, 32288
Gm4840 18 46355324 to 46356967 1643 - pseudogene predicted gene 4840
Cpgi10020 18 46356580 to 46357013 433 CpG island CpG island 10020
Tssr153225 18 46357132 to 46357144 12 - TSS region transcription start site region 153225
Gm4107 18 46357871 to 46427042 69171 unclassified gene predicted gene 4107
Gm32339 18 46358887 to 46380566 21679 + lncRNA gene predicted gene, 32339
Gm24617 18 46367365 to 46367485 120 + miRNA gene predicted gene, 24617
D18Mit58 18 46403749 to 46403932 183 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 58
Tssr150946 18 46404944 to 46404958 14 + TSS region transcription start site region 150946