Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:44374589-46744600

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209 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
baw 18 21513305 to 46408598 24895293 heritable phenotypic marker black and white
Lmr27 18 36054514 to 44976451 8921937 QTL leishmaniasis resistance 27
Gre1 18 43408013 to 46403932 2995919 QTL Glucocorticoid receptor expression 1
Cpgi10009 18 44380108 to 44381204 1096 CpG island CpG island 10009
Tssr153191 18 44380323 to 44380336 13 - TSS region transcription start site region 153191
Tssr150914 18 44380479 to 44380554 75 + TSS region transcription start site region 150914
Dcp2 18 44380502 to 44424969 44467 + protein coding gene decapping mRNA 2
Tssr150915 18 44380559 to 44380577 18 + TSS region transcription start site region 150915
Tssr150916 18 44380767 to 44380810 43 + TSS region transcription start site region 150916
Tssr150917 18 44380812 to 44380825 13 + TSS region transcription start site region 150917
Tssr150918 18 44381351 to 44381366 15 + TSS region transcription start site region 150918
Tssr150919 18 44411238 to 44411250 12 + TSS region transcription start site region 150919
Tssr150920 18 44423529 to 44423561 32 + TSS region transcription start site region 150920
Mcc 18 44425060 to 44812182 387122 - protein coding gene mutated in colorectal cancers
Tssr153192 18 44429518 to 44429522 4 - TSS region transcription start site region 153192
Tssr150921 18 44539466 to 44539469 3 + TSS region transcription start site region 150921
Tssr153193 18 44555870 to 44555920 50 - TSS region transcription start site region 153193
Tssr153194 18 44555922 to 44555937 15 - TSS region transcription start site region 153194
Tssr150922 18 44556802 to 44556807 5 + TSS region transcription start site region 150922
Tssr150923 18 44571154 to 44571156 2 + TSS region transcription start site region 150923
Tssr153195 18 44574658 to 44574670 12 - TSS region transcription start site region 153195
Tssr153196 18 44601720 to 44601737 17 - TSS region transcription start site region 153196
Tssr153197 18 44633754 to 44633758 4 - TSS region transcription start site region 153197
Tssr150924 18 44634148 to 44634181 33 + TSS region transcription start site region 150924
Tssr153198 18 44641414 to 44641417 3 - TSS region transcription start site region 153198
D18Mit235 18 44651007 to 44651125 118 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 235
Tssr153199 18 44652165 to 44652169 4 - TSS region transcription start site region 153199
D18Mit237 18 44654073 to 44654159 86 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 237
Cpgi10010 18 44661515 to 44662589 1074 CpG island CpG island 10010
A930012L18Rik 18 44661665 to 44676271 14606 + antisense lncRNA gene RIKEN cDNA A930012L18 gene
Tssr150925 18 44662113 to 44662124 11 + TSS region transcription start site region 150925
Tssr153200 18 44662214 to 44662244 30 - TSS region transcription start site region 153200
Tssr153201 18 44662251 to 44662264 13 - TSS region transcription start site region 153201
Tssr153202 18 44662268 to 44662306 38 - TSS region transcription start site region 153202
Tssr153203 18 44662318 to 44662338 20 - TSS region transcription start site region 153203
Tssr150926 18 44811656 to 44811693 37 + TSS region transcription start site region 150926
Cpgi10011 18 44811826 to 44812509 683 CpG island CpG island 10011
Gm43425 18 44821769 to 44825059 3290 + lincRNA gene predicted gene 43425
Ythdc2 18 44827746 to 44889724 61978 + protein coding gene YTH domain containing 2
Cpgi10012 18 44828179 to 44829148 969 CpG island CpG island 10012
Tssr150927 18 44828452 to 44828470 18 + TSS region transcription start site region 150927
Tssr150928 18 44828471 to 44828536 65 + TSS region transcription start site region 150928
Tssr153204 18 44828883 to 44828894 11 - TSS region transcription start site region 153204
Tssr153205 18 44828897 to 44828933 36 - TSS region transcription start site region 153205
4833422B07Rik 18 44883072 to 44884428 1356 unclassified gene RIKEN cDNA 4833422B07 gene
D18Mit35 18 44976313 to 44976451 138 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 35
Lmr13 18 44976313 to 44976451 138 QTL leishmaniasis resistance 13
D18Mit149 18 44997537 to 44997672 135 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 149
Mhysq5 18 44997537 to 44997672 135 QTL male hybrid sterility QTL 5
Thcr 18 44997537 to 68645706 23648169 QTL T helper cell response
Gm31706 18 45044811 to 45141138 96327 + lncRNA gene predicted gene, 31706
Gm6663 18 45069664 to 45071371 1707 - pseudogene predicted gene 6663
Gm26928 18 45089326 to 45090314 988 - pseudogene predicted gene, 26928
Cpgi10013 18 45146468 to 45147168 700 CpG island CpG island 10013
Gm4839 18 45146511 to 45147126 615 - pseudogene predicted gene 4839
D18Mit180 18 45261817 to 45261926 109 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 180
Cpgi10014 18 45268283 to 45269166 883 CpG island CpG island 10014
Tssr150929 18 45268853 to 45268864 11 + TSS region transcription start site region 150929
Kcnn2 18 45268860 to 45685887 417027 + protein coding gene potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
Tssr150930 18 45268876 to 45268916 40 + TSS region transcription start site region 150930
Tssr5306 18 45268951 to 45268965 14 + TSS region transcription start site region 5306
Gm10540 18 45285833 to 45286108 275 - pseudogene predicted gene 10540
Gm18652 18 45418624 to 45419153 529 - pseudogene predicted gene, 18652
Gm31907 18 45430264 to 45510292 80028 - lncRNA gene predicted gene, 31907
Gm32139 18 45558058 to 45559285 1227 - lncRNA gene predicted gene, 32139
Cpgi10015 18 45558092 to 45561119 3027 CpG island CpG island 10015
Tssr5307 18 45559013 to 45559022 9 + TSS region transcription start site region 5307
Tssr153206 18 45559325 to 45559339 14 - TSS region transcription start site region 153206
Tssr150931 18 45559407 to 45559418 11 + TSS region transcription start site region 150931
Tssr150932 18 45559430 to 45559482 52 + TSS region transcription start site region 150932
Tssr150933 18 45559488 to 45559503 15 + TSS region transcription start site region 150933
Tssr150934 18 45559534 to 45559548 14 + TSS region transcription start site region 150934
Tssr150935 18 45559560 to 45559569 9 + TSS region transcription start site region 150935
Tssr150936 18 45559589 to 45559600 11 + TSS region transcription start site region 150936
Tssr150937 18 45559806 to 45559816 10 + TSS region transcription start site region 150937
Tssr150938 18 45559818 to 45559881 63 + TSS region transcription start site region 150938
Tssr150939 18 45559888 to 45559905 17 + TSS region transcription start site region 150939
Tssr150940 18 45559929 to 45559943 14 + TSS region transcription start site region 150940
Tssr150941 18 45593344 to 45593345 1 + TSS region transcription start site region 150941
Gm46623 18 45655355 to 45676947 21592 - lncRNA gene predicted gene, 46623
A330093E20Rik 18 45683487 to 45896509 213022 - antisense lncRNA gene RIKEN cDNA A330093E20 gene
Gm41718 18 45718472 to 45735438 16966 + lncRNA gene predicted gene, 41718
Tssr153207 18 45895586 to 45895590 4 - TSS region transcription start site region 153207
Tssr153208 18 45934312 to 45934317 5 - TSS region transcription start site region 153208
Gm26262 18 45941007 to 45941133 126 + snoRNA gene predicted gene, 26262
Tssr5308 18 46074939 to 46074942 3 + TSS region transcription start site region 5308
Gm38337 18 46112661 to 46113259 598 - unclassified gene predicted gene, 38337
Tssr153209 18 46141574 to 46141599 25 - TSS region transcription start site region 153209
Tssr153210 18 46141641 to 46141648 7 - TSS region transcription start site region 153210
Tssr153211 18 46161743 to 46161752 9 - TSS region transcription start site region 153211
Trim36 18 46165302 to 46212607 47305 - protein coding gene tripartite motif-containing 36
Tssr153212 18 46175997 to 46176015 18 - TSS region transcription start site region 153212
Tssr150942 18 46176591 to 46176594 3 + TSS region transcription start site region 150942
Tssr153213 18 46179920 to 46179968 48 - TSS region transcription start site region 153213
Cpgi10016 18 46198143 to 46199660 1517 CpG island CpG island 10016
Tssr153214 18 46198810 to 46198824 14 - TSS region transcription start site region 153214
Tssr153215 18 46198838 to 46198863 25 - TSS region transcription start site region 153215
1700018A14Rik 18 46199021 to 46199731 710 + unclassified gene RIKEN cDNA 1700018A14 gene
Cpgi10017 18 46211743 to 46212798 1055 CpG island CpG island 10017
Tssr153216 18 46212451 to 46212461 10 - TSS region transcription start site region 153216
Tssr153217 18 46212569 to 46212590 21 - TSS region transcription start site region 153217
Tssr153218 18 46212595 to 46212634 39 - TSS region transcription start site region 153218
Tssr153219 18 46212813 to 46212821 8 - TSS region transcription start site region 153219
Tssr150943 18 46226026 to 46226034 8 + TSS region transcription start site region 150943
Tssr150944 18 46227080 to 46227092 12 + TSS region transcription start site region 150944
Tssr153220 18 46237859 to 46237879 20 - TSS region transcription start site region 153220
Pggt1b 18 46239949 to 46280850 40901 - protein coding gene protein geranylgeranyltransferase type I, beta subunit
Cpgi10018 18 46280357 to 46280994 637 CpG island CpG island 10018
Tssr153221 18 46280820 to 46280841 21 - TSS region transcription start site region 153221
Ccdc112 18 46282151 to 46311928 29777 - protein coding gene coiled-coil domain containing 112
n-TTcgt1 18 46286429 to 46286500 71 - tRNA gene nuclear encoded tRNA threonine 1 (anticodon CGT)
Cpgi10019 18 46311347 to 46312161 814 CpG island CpG island 10019
Tssr153222 18 46311811 to 46311834 23 - TSS region transcription start site region 153222
Tssr153223 18 46311858 to 46311871 13 - TSS region transcription start site region 153223
Tssr153224 18 46311891 to 46311926 35 - TSS region transcription start site region 153224
Tssr150945 18 46337294 to 46337303 9 + TSS region transcription start site region 150945
4930415P13Rik 18 46339895 to 46340428 533 unclassified gene RIKEN cDNA 4930415P13 gene
Gm32288 18 46351446 to 46491048 139602 - lncRNA gene predicted gene, 32288
Gm4840 18 46355324 to 46356967 1643 - pseudogene predicted gene 4840
Cpgi10020 18 46356580 to 46357013 433 CpG island CpG island 10020
Tssr153225 18 46357132 to 46357144 12 - TSS region transcription start site region 153225
Gm4107 18 46357871 to 46427042 69171 unclassified gene predicted gene 4107
Gm32339 18 46358887 to 46380566 21679 + lncRNA gene predicted gene, 32339
Gm24617 18 46367365 to 46367485 120 + miRNA gene predicted gene, 24617
D18Mit58 18 46403749 to 46403932 183 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 58
Tssr150946 18 46404944 to 46404958 14 + TSS region transcription start site region 150946
Sstapa1 18 46408479 to 57457636 11049157 QTL suseptibility to Staphylococcus aureus infection 1
D18Mit178 18 46408479 to 46408598 119 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 178
Tssr153226 18 46447640 to 46447642 2 - TSS region transcription start site region 153226
Tssr153227 18 46447688 to 46447729 41 - TSS region transcription start site region 153227
Mospd4 18 46465215 to 46465790 575 - pseudogene motile sperm domain containing 4
Cpgi10021 18 46465248 to 46465920 672 CpG island CpG island 10021
Tssr153228 18 46465780 to 46465819 39 - TSS region transcription start site region 153228
Gm24076 18 46473931 to 46474024 93 - snRNA gene predicted gene, 24076
Tssr150947 18 46474071 to 46474072 1 + TSS region transcription start site region 150947
Tssr150948 18 46474938 to 46474959 21 + TSS region transcription start site region 150948
Tssr153229 18 46476841 to 46476849 8 - TSS region transcription start site region 153229
Gm3720 18 46493714 to 46497965 4251 + pseudogene predicted gene 3720
Tssr153230 18 46504010 to 46504046 36 - TSS region transcription start site region 153230
Fem1c 18 46504606 to 46525971 21365 - protein coding gene fem-1 homolog c (C.elegans)
Tssr150949 18 46515916 to 46515925 9 + TSS region transcription start site region 150949
Tssr153231 18 46522126 to 46522133 7 - TSS region transcription start site region 153231
Tssr153232 18 46522196 to 46522200 4 - TSS region transcription start site region 153232
Cpgi10022 18 46524357 to 46524635 278 CpG island CpG island 10022
Cpgi10023 18 46524965 to 46526534 1569 CpG island CpG island 10023
Tssr153233 18 46525017 to 46525052 35 - TSS region transcription start site region 153233
Tssr153234 18 46525077 to 46525086 9 - TSS region transcription start site region 153234
Tssr150950 18 46525152 to 46525192 40 + TSS region transcription start site region 150950
Tssr150951 18 46525199 to 46525232 33 + TSS region transcription start site region 150951
Tssr5309 18 46525336 to 46525365 29 - TSS region transcription start site region 5309
Tssr153235 18 46525751 to 46525764 13 - TSS region transcription start site region 153235
Tssr153236 18 46525772 to 46525783 11 - TSS region transcription start site region 153236
Tssr153237 18 46525851 to 46525871 20 - TSS region transcription start site region 153237
Tssr153238 18 46525940 to 46525999 59 - TSS region transcription start site region 153238
Tssr153239 18 46526002 to 46526009 7 - TSS region transcription start site region 153239
Tssr153240 18 46526022 to 46526027 5 - TSS region transcription start site region 153240
Tssr153241 18 46526035 to 46526046 11 - TSS region transcription start site region 153241
Tssr153242 18 46526048 to 46526055 7 - TSS region transcription start site region 153242
Bmd16 18 46534847 to 46534993 146 QTL bone mineral density 16
D18Mit36 18 46534847 to 46534993 146 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 36
Tssr153243 18 46557912 to 46557933 21 - TSS region transcription start site region 153243
Ticam2 18 46559155 to 46574533 15378 - protein coding gene toll-like receptor adaptor molecule 2
Tssr153244 18 46572928 to 46572941 13 - TSS region transcription start site region 153244
Tssr153245 18 46572945 to 46572957 12 - TSS region transcription start site region 153245
Tssr153246 18 46572958 to 46573000 42 - TSS region transcription start site region 153246
Cpgi10024 18 46573999 to 46574571 572 CpG island CpG island 10024
Tssr153247 18 46574300 to 46574311 11 - TSS region transcription start site region 153247
Tssr153248 18 46574319 to 46574328 9 - TSS region transcription start site region 153248
Tssr153249 18 46574451 to 46574462 11 - TSS region transcription start site region 153249
Tssr153250 18 46574469 to 46574488 19 - TSS region transcription start site region 153250
Tssr153251 18 46574491 to 46574503 12 - TSS region transcription start site region 153251
Tssr153252 18 46574504 to 46574518 14 - TSS region transcription start site region 153252
Gm18606 18 46575832 to 46576345 513 - pseudogene predicted gene, 18606
Tmed7 18 46585928 to 46597535 11607 - protein coding gene transmembrane p24 trafficking protein 7
Cpgi10025 18 46596991 to 46598368 1377 CpG island CpG island 10025
Tssr153253 18 46597299 to 46597347 48 - TSS region transcription start site region 153253
Tssr153254 18 46597459 to 46597470 11 - TSS region transcription start site region 153254
Tssr153255 18 46597480 to 46597543 63 - TSS region transcription start site region 153255
Tssr150952 18 46597698 to 46597765 67 + TSS region transcription start site region 150952
Eif1a 18 46597704 to 46610225 12521 + protein coding gene eukaryotic translation initiation factor 1A
Tssr150953 18 46598533 to 46598613 80 + TSS region transcription start site region 150953
Tssr150954 18 46598619 to 46598642 23 + TSS region transcription start site region 150954
Tssr150955 18 46601975 to 46601990 15 + TSS region transcription start site region 150955
Tssr150956 18 46609278 to 46609282 4 + TSS region transcription start site region 150956
Tssr153256 18 46612228 to 46612240 12 - TSS region transcription start site region 153256
Tssr153257 18 46613005 to 46613019 14 - TSS region transcription start site region 153257
Gm41719 18 46614579 to 46618344 3765 + lncRNA gene predicted gene, 41719
Gm3734 18 46630676 to 46641603 10927 + lncRNA gene predicted gene 3734
Tssr150957 18 46630908 to 46630914 6 + TSS region transcription start site region 150957
Tssr153258 18 46636328 to 46636333 5 - TSS region transcription start site region 153258
D18Mit56 18 46644294 to 46644544 250 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 56
Tssr153259 18 46673468 to 46673472 4 - TSS region transcription start site region 153259
Cdo1 18 46713193 to 46728395 15202 - protein coding gene cysteine dioxygenase 1, cytosolic
Tssr153260 18 46713409 to 46713412 3 - TSS region transcription start site region 153260
Tssr153261 18 46713569 to 46713572 3 - TSS region transcription start site region 153261
Tssr153262 18 46715732 to 46715750 18 - TSS region transcription start site region 153262
Tssr153263 18 46717094 to 46717117 23 - TSS region transcription start site region 153263
Tssr153264 18 46726929 to 46726931 2 - TSS region transcription start site region 153264
Cpgi10026 18 46727735 to 46728556 821 CpG island CpG island 10026
Tssr153265 18 46728347 to 46728363 16 - TSS region transcription start site region 153265