Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:43621048-49431055

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366 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
baw 18 21513305 to 46408598 24895293 heritable phenotypic marker black and white
Lmr27 18 36054514 to 44976451 8921937 QTL leishmaniasis resistance 27
Gre1 18 43408013 to 46403932 2995919 QTL Glucocorticoid receptor expression 1
Jakmip2 18 43531408 to 43687773 156365 - protein coding gene janus kinase and microtubule interacting protein 2
Tssr153169 18 43634788 to 43634792 4 - TSS region transcription start site region 153169
D18Mit194 18 43660827 to 43660951 124 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 194
Tssr153170 18 43687555 to 43687582 27 - TSS region transcription start site region 153170
Tssr153171 18 43687630 to 43687655 25 - TSS region transcription start site region 153171
Tssr153172 18 43687659 to 43687671 12 - TSS region transcription start site region 153172
Tssr5302 18 43687672 to 43687683 11 - TSS region transcription start site region 5302
Tssr153173 18 43687695 to 43687759 64 - TSS region transcription start site region 153173
Spink1 18 43728069 to 43737237 9168 - protein coding gene serine peptidase inhibitor, Kazal type 1
Tssr153174 18 43737167 to 43737180 13 - TSS region transcription start site region 153174
Tssr153175 18 43737186 to 43737214 28 - TSS region transcription start site region 153175
Tssr153176 18 43737306 to 43737333 27 - TSS region transcription start site region 153176
Tssr153177 18 43737503 to 43737511 8 - TSS region transcription start site region 153177
Tssr153178 18 43737525 to 43737532 7 - TSS region transcription start site region 153178
Tssr153179 18 43737557 to 43737565 8 - TSS region transcription start site region 153179
Gm23894 18 43761151 to 43761463 312 + unclassified non-coding RNA gene predicted gene, 23894
Scgb3a2 18 43764289 to 43767399 3110 + protein coding gene secretoglobin, family 3A, member 2
Tssr150893 18 43764317 to 43764333 16 + TSS region transcription start site region 150893
Gm94 18 43777196 to 43792878 15682 - protein coding gene predicted gene 94
Tssr153180 18 43792873 to 43792881 8 - TSS region transcription start site region 153180
Gm41715 18 43844642 to 43870414 25772 + lncRNA gene predicted gene, 41715
Tssr150894 18 43963234 to 43963252 18 + TSS region transcription start site region 150894
Spink5 18 43963235 to 44022501 59266 + protein coding gene serine peptidase inhibitor, Kazal type 5
Spink14 18 44027869 to 44032208 4339 + protein coding gene serine peptidase inhibitor, Kazal type 14
Gm8390 18 44061598 to 44062204 606 + pseudogene predicted gene 8390
Tssr150895 18 44071390 to 44071402 12 + TSS region transcription start site region 150895
Spink6 18 44071393 to 44083610 12217 + protein coding gene serine peptidase inhibitor, Kazal type 6
Tssr5303 18 44073573 to 44073585 12 + TSS region transcription start site region 5303
Tssr153181 18 44088488 to 44088499 11 - TSS region transcription start site region 153181
Tssr150896 18 44101826 to 44101832 6 + TSS region transcription start site region 150896
Tssr150897 18 44104316 to 44104329 13 + TSS region transcription start site region 150897
Tssr150898 18 44104474 to 44104481 7 + TSS region transcription start site region 150898
Tssr150899 18 44104510 to 44104546 36 + TSS region transcription start site region 150899
Spink12 18 44104523 to 44108543 4020 + protein coding gene serine peptidase inhibitor, Kazal type 12
Tssr150900 18 44104548 to 44104559 11 + TSS region transcription start site region 150900
Tssr150901 18 44104649 to 44104666 17 + TSS region transcription start site region 150901
Tssr150902 18 44104684 to 44104698 14 + TSS region transcription start site region 150902
Tssr150903 18 44116189 to 44116196 7 + TSS region transcription start site region 150903
Gm37797 18 44116263 to 44119567 3304 + protein coding gene predicted gene, 37797
Gm10267 18 44156395 to 44159873 3478 - protein coding gene predicted gene 10267
Tssr153182 18 44159929 to 44159938 9 - TSS region transcription start site region 153182
Spinkl 18 44166358 to 44175073 8715 - protein coding gene serine protease inhibitor, Kazal type-like
Tssr153183 18 44173718 to 44173722 4 - TSS region transcription start site region 153183
Tssr5304 18 44174981 to 44175001 20 - TSS region transcription start site region 5304
Tssr153184 18 44175049 to 44175050 1 - TSS region transcription start site region 153184
Tssr153185 18 44175062 to 44175076 14 - TSS region transcription start site region 153185
Tssr153186 18 44175214 to 44175228 14 - TSS region transcription start site region 153186
Spink11 18 44190045 to 44196177 6132 - protein coding gene serine peptidase inhibitor, Kazal type 11
Tssr153187 18 44196167 to 44196179 12 - TSS region transcription start site region 153187
Tssr150904 18 44200806 to 44200810 4 + TSS region transcription start site region 150904
Tssr150905 18 44200845 to 44200849 4 + TSS region transcription start site region 150905
Gm10542 18 44201264 to 44206018 4754 + protein coding gene predicted gene 10542
Tssr153188 18 44253429 to 44253459 30 - TSS region transcription start site region 153188
Tssr153189 18 44253858 to 44253867 9 - TSS region transcription start site region 153189
Tssr153190 18 44255840 to 44255843 3 - TSS region transcription start site region 153190
Gm41716 18 44269161 to 44275331 6170 - lncRNA gene predicted gene, 41716
Tssr150906 18 44270078 to 44270083 5 + TSS region transcription start site region 150906
Tssr150907 18 44270102 to 44270135 33 + TSS region transcription start site region 150907
Npy6r 18 44270127 to 44277700 7573 + protein coding gene neuropeptide Y receptor Y6
Tssr150908 18 44270141 to 44270146 5 + TSS region transcription start site region 150908
Tssr5305 18 44315647 to 44315656 9 + TSS region transcription start site region 5305
Gm41717 18 44315658 to 44327459 11801 + lncRNA gene predicted gene, 41717
Tssr150909 18 44315709 to 44315717 8 + TSS region transcription start site region 150909
Tssr150910 18 44334062 to 44334081 19 + TSS region transcription start site region 150910
Myot 18 44334074 to 44355724 21650 + protein coding gene myotilin
Tssr150911 18 44334114 to 44334123 9 + TSS region transcription start site region 150911
Tssr150912 18 44337173 to 44337206 33 + TSS region transcription start site region 150912
Tssr150913 18 44344428 to 44344433 5 + TSS region transcription start site region 150913
Cpgi10009 18 44380108 to 44381204 1096 CpG island CpG island 10009
Tssr153191 18 44380323 to 44380336 13 - TSS region transcription start site region 153191
Tssr150914 18 44380479 to 44380554 75 + TSS region transcription start site region 150914
Dcp2 18 44380502 to 44424969 44467 + protein coding gene decapping mRNA 2
Tssr150915 18 44380559 to 44380577 18 + TSS region transcription start site region 150915
Tssr150916 18 44380767 to 44380810 43 + TSS region transcription start site region 150916
Tssr150917 18 44380812 to 44380825 13 + TSS region transcription start site region 150917
Tssr150918 18 44381351 to 44381366 15 + TSS region transcription start site region 150918
Tssr150919 18 44411238 to 44411250 12 + TSS region transcription start site region 150919
Tssr150920 18 44423529 to 44423561 32 + TSS region transcription start site region 150920
Mcc 18 44425060 to 44812182 387122 - protein coding gene mutated in colorectal cancers
Tssr153192 18 44429518 to 44429522 4 - TSS region transcription start site region 153192
Tssr150921 18 44539466 to 44539469 3 + TSS region transcription start site region 150921
Tssr153193 18 44555870 to 44555920 50 - TSS region transcription start site region 153193
Tssr153194 18 44555922 to 44555937 15 - TSS region transcription start site region 153194
Tssr150922 18 44556802 to 44556807 5 + TSS region transcription start site region 150922
Tssr150923 18 44571154 to 44571156 2 + TSS region transcription start site region 150923
Tssr153195 18 44574658 to 44574670 12 - TSS region transcription start site region 153195
Tssr153196 18 44601720 to 44601737 17 - TSS region transcription start site region 153196
Tssr153197 18 44633754 to 44633758 4 - TSS region transcription start site region 153197
Tssr150924 18 44634148 to 44634181 33 + TSS region transcription start site region 150924
Tssr153198 18 44641414 to 44641417 3 - TSS region transcription start site region 153198
D18Mit235 18 44651007 to 44651125 118 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 235
Tssr153199 18 44652165 to 44652169 4 - TSS region transcription start site region 153199
D18Mit237 18 44654073 to 44654159 86 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 237
Cpgi10010 18 44661515 to 44662589 1074 CpG island CpG island 10010
A930012L18Rik 18 44661665 to 44676271 14606 + antisense lncRNA gene RIKEN cDNA A930012L18 gene
Tssr150925 18 44662113 to 44662124 11 + TSS region transcription start site region 150925
Tssr153200 18 44662214 to 44662244 30 - TSS region transcription start site region 153200
Tssr153201 18 44662251 to 44662264 13 - TSS region transcription start site region 153201
Tssr153202 18 44662268 to 44662306 38 - TSS region transcription start site region 153202
Tssr153203 18 44662318 to 44662338 20 - TSS region transcription start site region 153203
Tssr150926 18 44811656 to 44811693 37 + TSS region transcription start site region 150926
Cpgi10011 18 44811826 to 44812509 683 CpG island CpG island 10011
Gm43425 18 44821769 to 44825059 3290 + lincRNA gene predicted gene 43425
Ythdc2 18 44827746 to 44889724 61978 + protein coding gene YTH domain containing 2
Cpgi10012 18 44828179 to 44829148 969 CpG island CpG island 10012
Tssr150927 18 44828452 to 44828470 18 + TSS region transcription start site region 150927
Tssr150928 18 44828471 to 44828536 65 + TSS region transcription start site region 150928
Tssr153204 18 44828883 to 44828894 11 - TSS region transcription start site region 153204
Tssr153205 18 44828897 to 44828933 36 - TSS region transcription start site region 153205
4833422B07Rik 18 44883072 to 44884428 1356 unclassified gene RIKEN cDNA 4833422B07 gene
D18Mit35 18 44976313 to 44976451 138 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 35
Lmr13 18 44976313 to 44976451 138 QTL leishmaniasis resistance 13
Mhysq5 18 44997537 to 44997672 135 QTL male hybrid sterility QTL 5
D18Mit149 18 44997537 to 44997672 135 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 149
Thcr 18 44997537 to 68645706 23648169 QTL T helper cell response
Gm31706 18 45044811 to 45141138 96327 + lncRNA gene predicted gene, 31706
Gm6663 18 45069664 to 45071371 1707 - pseudogene predicted gene 6663
Gm26928 18 45089326 to 45090314 988 - pseudogene predicted gene, 26928
Cpgi10013 18 45146468 to 45147168 700 CpG island CpG island 10013
Gm4839 18 45146511 to 45147126 615 - pseudogene predicted gene 4839
D18Mit180 18 45261817 to 45261926 109 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 180
Cpgi10014 18 45268283 to 45269166 883 CpG island CpG island 10014
Tssr150929 18 45268853 to 45268864 11 + TSS region transcription start site region 150929
Kcnn2 18 45268860 to 45685887 417027 + protein coding gene potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
Tssr150930 18 45268876 to 45268916 40 + TSS region transcription start site region 150930
Tssr5306 18 45268951 to 45268965 14 + TSS region transcription start site region 5306
Gm10540 18 45285833 to 45286108 275 - pseudogene predicted gene 10540
Gm18652 18 45418624 to 45419153 529 - pseudogene predicted gene, 18652
Gm31907 18 45430264 to 45510292 80028 - lncRNA gene predicted gene, 31907
Gm32139 18 45558058 to 45559285 1227 - lncRNA gene predicted gene, 32139
Cpgi10015 18 45558092 to 45561119 3027 CpG island CpG island 10015
Tssr5307 18 45559013 to 45559022 9 + TSS region transcription start site region 5307
Tssr153206 18 45559325 to 45559339 14 - TSS region transcription start site region 153206
Tssr150931 18 45559407 to 45559418 11 + TSS region transcription start site region 150931
Tssr150932 18 45559430 to 45559482 52 + TSS region transcription start site region 150932
Tssr150933 18 45559488 to 45559503 15 + TSS region transcription start site region 150933
Tssr150934 18 45559534 to 45559548 14 + TSS region transcription start site region 150934
Tssr150935 18 45559560 to 45559569 9 + TSS region transcription start site region 150935
Tssr150936 18 45559589 to 45559600 11 + TSS region transcription start site region 150936
Tssr150937 18 45559806 to 45559816 10 + TSS region transcription start site region 150937
Tssr150938 18 45559818 to 45559881 63 + TSS region transcription start site region 150938
Tssr150939 18 45559888 to 45559905 17 + TSS region transcription start site region 150939
Tssr150940 18 45559929 to 45559943 14 + TSS region transcription start site region 150940
Tssr150941 18 45593344 to 45593345 1 + TSS region transcription start site region 150941
Gm46623 18 45655355 to 45676947 21592 - lncRNA gene predicted gene, 46623
A330093E20Rik 18 45683487 to 45896509 213022 - antisense lncRNA gene RIKEN cDNA A330093E20 gene
Gm41718 18 45718472 to 45735438 16966 + lncRNA gene predicted gene, 41718
Tssr153207 18 45895586 to 45895590 4 - TSS region transcription start site region 153207
Tssr153208 18 45934312 to 45934317 5 - TSS region transcription start site region 153208
Gm26262 18 45941007 to 45941133 126 + snoRNA gene predicted gene, 26262
Tssr5308 18 46074939 to 46074942 3 + TSS region transcription start site region 5308
Gm38337 18 46112661 to 46113259 598 - unclassified gene predicted gene, 38337
Tssr153209 18 46141574 to 46141599 25 - TSS region transcription start site region 153209
Tssr153210 18 46141641 to 46141648 7 - TSS region transcription start site region 153210
Tssr153211 18 46161743 to 46161752 9 - TSS region transcription start site region 153211
Trim36 18 46165302 to 46212607 47305 - protein coding gene tripartite motif-containing 36
Tssr153212 18 46175997 to 46176015 18 - TSS region transcription start site region 153212
Tssr150942 18 46176591 to 46176594 3 + TSS region transcription start site region 150942
Tssr153213 18 46179920 to 46179968 48 - TSS region transcription start site region 153213
Cpgi10016 18 46198143 to 46199660 1517 CpG island CpG island 10016
Tssr153214 18 46198810 to 46198824 14 - TSS region transcription start site region 153214
Tssr153215 18 46198838 to 46198863 25 - TSS region transcription start site region 153215
1700018A14Rik 18 46199021 to 46199731 710 + unclassified gene RIKEN cDNA 1700018A14 gene
Cpgi10017 18 46211743 to 46212798 1055 CpG island CpG island 10017
Tssr153216 18 46212451 to 46212461 10 - TSS region transcription start site region 153216
Tssr153217 18 46212569 to 46212590 21 - TSS region transcription start site region 153217
Tssr153218 18 46212595 to 46212634 39 - TSS region transcription start site region 153218
Tssr153219 18 46212813 to 46212821 8 - TSS region transcription start site region 153219
Tssr150943 18 46226026 to 46226034 8 + TSS region transcription start site region 150943
Tssr150944 18 46227080 to 46227092 12 + TSS region transcription start site region 150944
Tssr153220 18 46237859 to 46237879 20 - TSS region transcription start site region 153220
Pggt1b 18 46239949 to 46280850 40901 - protein coding gene protein geranylgeranyltransferase type I, beta subunit
Cpgi10018 18 46280357 to 46280994 637 CpG island CpG island 10018
Tssr153221 18 46280820 to 46280841 21 - TSS region transcription start site region 153221
Ccdc112 18 46282151 to 46311928 29777 - protein coding gene coiled-coil domain containing 112
n-TTcgt1 18 46286429 to 46286500 71 - tRNA gene nuclear encoded tRNA threonine 1 (anticodon CGT)
Cpgi10019 18 46311347 to 46312161 814 CpG island CpG island 10019
Tssr153222 18 46311811 to 46311834 23 - TSS region transcription start site region 153222
Tssr153223 18 46311858 to 46311871 13 - TSS region transcription start site region 153223
Tssr153224 18 46311891 to 46311926 35 - TSS region transcription start site region 153224
Tssr150945 18 46337294 to 46337303 9 + TSS region transcription start site region 150945
4930415P13Rik 18 46339895 to 46340428 533 unclassified gene RIKEN cDNA 4930415P13 gene
Gm32288 18 46351446 to 46491048 139602 - lncRNA gene predicted gene, 32288
Gm4840 18 46355324 to 46356967 1643 - pseudogene predicted gene 4840
Cpgi10020 18 46356580 to 46357013 433 CpG island CpG island 10020
Tssr153225 18 46357132 to 46357144 12 - TSS region transcription start site region 153225
Gm4107 18 46357871 to 46427042 69171 unclassified gene predicted gene 4107
Gm32339 18 46358887 to 46380566 21679 + lncRNA gene predicted gene, 32339
Gm24617 18 46367365 to 46367485 120 + miRNA gene predicted gene, 24617
D18Mit58 18 46403749 to 46403932 183 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 58
Tssr150946 18 46404944 to 46404958 14 + TSS region transcription start site region 150946
D18Mit178 18 46408479 to 46408598 119 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 178
Sstapa1 18 46408479 to 57457636 11049157 QTL suseptibility to Staphylococcus aureus infection 1
Tssr153226 18 46447640 to 46447642 2 - TSS region transcription start site region 153226
Tssr153227 18 46447688 to 46447729 41 - TSS region transcription start site region 153227
Mospd4 18 46465215 to 46465790 575 - pseudogene motile sperm domain containing 4
Cpgi10021 18 46465248 to 46465920 672 CpG island CpG island 10021