Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:4350095-5492371

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94 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Map3k8 18 4331327 to 4353015 21688 - protein coding gene mitogen-activated protein kinase kinase kinase 8
Cpgi9666 18 4352815 to 4353669 854 CpG island CpG island 9666
Tssr152314 18 4352916 to 4352923 7 - TSS region transcription start site region 152314
Tssr152315 18 4352944 to 4352962 18 - TSS region transcription start site region 152315
Tssr149904 18 4353061 to 4353072 11 + TSS region transcription start site region 149904
Tssr152316 18 4353226 to 4353238 12 - TSS region transcription start site region 152316
Tssr152317 18 4353245 to 4353256 11 - TSS region transcription start site region 152317
Tssr152318 18 4353282 to 4353330 48 - TSS region transcription start site region 152318
Tssr152319 18 4353335 to 4353352 17 - TSS region transcription start site region 152319
Tssr152320 18 4353412 to 4353431 19 - TSS region transcription start site region 152320
Tssr149905 18 4353537 to 4353554 17 + TSS region transcription start site region 149905
4833419F23Rik 18 4353558 to 4368920 15362 + lncRNA gene RIKEN cDNA 4833419F23 gene
Tssr149906 18 4353581 to 4353592 11 + TSS region transcription start site region 149906
Tssr149907 18 4353608 to 4353631 23 + TSS region transcription start site region 149907
Gm50096 18 4353644 to 4380723 27079 + unclassified gene predicted gene, 50096
Tssr149908 18 4366923 to 4366934 11 + TSS region transcription start site region 149908
Gm26865 18 4373669 to 4379985 6316 - lincRNA gene predicted gene, 26865
Cpgi9667 18 4375471 to 4376173 702 CpG island CpG island 9667
Tssr149909 18 4375583 to 4375623 40 + TSS region transcription start site region 149909
Mtpap 18 4375592 to 4397330 21738 + protein coding gene mitochondrial poly(A) polymerase
Tssr149910 18 4396775 to 4396781 6 + TSS region transcription start site region 149910
Gm50023 18 4399328 to 4400910 1582 + lincRNA gene predicted gene, 50023
Gm7411 18 4484506 to 4485501 995 + pseudogene predicted gene 7411
Tssr149911 18 4484717 to 4484727 10 + TSS region transcription start site region 149911
Gm41658 18 4541612 to 4562599 20987 - lncRNA gene predicted gene, 41658
Tssr149912 18 4563123 to 4563130 7 + TSS region transcription start site region 149912
Tssr149913 18 4590731 to 4590759 28 + TSS region transcription start site region 149913
Gm50024 18 4590763 to 4616064 25301 + lincRNA gene predicted gene, 50024
Cpgi9668 18 4634414 to 4635768 1354 CpG island CpG island 9668
Jcad 18 4634878 to 4682869 47991 + protein coding gene junctional cadherin 5 associated
Tssr149914 18 4634912 to 4634974 62 + TSS region transcription start site region 149914
Tssr149915 18 4634977 to 4634990 13 + TSS region transcription start site region 149915
Tssr149916 18 4636532 to 4636553 21 + TSS region transcription start site region 149916
Tssr149917 18 4743053 to 4743061 8 + TSS region transcription start site region 149917
Gm5047 18 4743076 to 4743876 800 + pseudogene predicted gene 5047
Gm10556 18 4812486 to 4850959 38473 + lincRNA gene predicted gene 10556
Gm34269 18 4820303 to 4826659 6356 - lncRNA gene predicted gene, 34269
Gm41659 18 4869777 to 4912263 42486 + lncRNA gene predicted gene, 41659
Tssr149918 18 4908906 to 4908940 34 + TSS region transcription start site region 149918
Tssr149919 18 4908944 to 4908963 19 + TSS region transcription start site region 149919
Tssr149920 18 4908965 to 4908974 9 + TSS region transcription start site region 149920
Tssr5237 18 4909199 to 4909207 8 + TSS region transcription start site region 5237
D18Mit165 18 4919199 to 4919513 314 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 165
Cpgi9669 18 4920095 to 4922371 2276 CpG island CpG island 9669
Tssr149921 18 4920509 to 4920586 77 + TSS region transcription start site region 149921
Svil 18 4920540 to 5119299 198759 + protein coding gene supervillin
Tssr149922 18 4920623 to 4920642 19 + TSS region transcription start site region 149922
Tssr149923 18 4920690 to 4920706 16 + TSS region transcription start site region 149923
Tssr149924 18 4920721 to 4920733 12 + TSS region transcription start site region 149924
Tssr149925 18 4921542 to 4921570 28 + TSS region transcription start site region 149925
Tssr149926 18 4921662 to 4921690 28 + TSS region transcription start site region 149926
Tssr149927 18 4928783 to 4928800 17 + TSS region transcription start site region 149927
BC025933 18 4959635 to 4960299 664 protein coding gene cDNA sequence BC025933
Tssr149928 18 4980587 to 4980598 11 + TSS region transcription start site region 149928
Tssr149929 18 4980600 to 4980627 27 + TSS region transcription start site region 149929
Tssr149930 18 4993777 to 4993789 12 + TSS region transcription start site region 149930
Tssr149931 18 4993795 to 4993819 24 + TSS region transcription start site region 149931
Tssr149932 18 4993837 to 4993854 17 + TSS region transcription start site region 149932
Tssr149933 18 4993870 to 4993880 10 + TSS region transcription start site region 149933
Tssr149934 18 4994600 to 4994623 23 + TSS region transcription start site region 149934
Tssr149935 18 4994640 to 4994669 29 + TSS region transcription start site region 149935
Tssr149936 18 4994670 to 4994706 36 + TSS region transcription start site region 149936
Tssr149937 18 4994710 to 4994717 7 + TSS region transcription start site region 149937
Tssr149938 18 4994890 to 4994901 11 + TSS region transcription start site region 149938
Tssr149939 18 4994903 to 4994943 40 + TSS region transcription start site region 149939
Tssr149940 18 4994972 to 4994983 11 + TSS region transcription start site region 149940
Tssr149941 18 4995009 to 4995014 5 + TSS region transcription start site region 149941
Tssr149942 18 5035071 to 5035114 43 + TSS region transcription start site region 149942
W3q15 18 5041119 to 61139571 56098452 QTL weight 3 weeks QTL 15
D18Mit19 18 5041119 to 5041269 150 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 19
Gm34326 18 5042818 to 5048867 6049 - lncRNA gene predicted gene, 34326
Tssr149943 18 5125610 to 5125615 5 + TSS region transcription start site region 149943
Gm34541 18 5139349 to 5142068 2719 + lncRNA gene predicted gene, 34541
Gm26682 18 5141762 to 5142801 1039 - lincRNA gene predicted gene, 26682
Cpgi9670 18 5162226 to 5162716 490 CpG island CpG island 9670
Cpgi9671 18 5162989 to 5163731 742 CpG island CpG island 9671
Zfp438 18 5210029 to 5334807 124778 - protein coding gene zinc finger protein 438
Tssr152321 18 5273257 to 5273276 19 - TSS region transcription start site region 152321
Tssr152322 18 5273278 to 5273299 21 - TSS region transcription start site region 152322
Tssr5238 18 5273312 to 5273318 6 - TSS region transcription start site region 5238
Tssr152323 18 5273321 to 5273325 4 - TSS region transcription start site region 152323
Cpgi9672 18 5333852 to 5334977 1125 CpG island CpG island 9672
Tssr152324 18 5334309 to 5334331 22 - TSS region transcription start site region 152324
Tssr152325 18 5334364 to 5334410 46 - TSS region transcription start site region 152325
Tssr152326 18 5334739 to 5334751 12 - TSS region transcription start site region 152326
Tssr152327 18 5334767 to 5334835 68 - TSS region transcription start site region 152327
D18Mit109 18 5336017 to 5336186 169 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 109
Gm50064 18 5348258 to 5361861 13603 - lincRNA gene predicted gene, 50064
Gm50065 18 5368541 to 5370482 1941 - lincRNA gene predicted gene, 50065
Gm34630 18 5389802 to 5402870 13068 - lncRNA gene predicted gene, 34630
Tssr152328 18 5404430 to 5404437 7 - TSS region transcription start site region 152328
Tssr152329 18 5404498 to 5404502 4 - TSS region transcription start site region 152329
Tssr152330 18 5404575 to 5404589 14 - TSS region transcription start site region 152330
Gm10125 18 5491501 to 5592437 100936 - lncRNA gene predicted gene 10125