Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:43439317-44089333

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38 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm41714 18 43443776 to 43465462 21686 - lncRNA gene predicted gene, 41714
Gm3650 18 43472816 to 43475169 2353 + pseudogene predicted gene 3650
Eif3j2 18 43475418 to 43477796 2378 - protein coding gene eukaryotic translation initiation factor 3, subunit J2
Cpgi10006 18 43477528 to 43477892 364 CpG island CpG island 10006
Gm27325 18 43477704 to 43477777 73 - miRNA gene predicted gene, 27325
Tssr153167 18 43477764 to 43477801 37 - TSS region transcription start site region 153167
Jakmip2 18 43531408 to 43687773 156365 - protein coding gene janus kinase and microtubule interacting protein 2
Tssr153168 18 43546837 to 43546882 45 - TSS region transcription start site region 153168
Cpgi10007 18 43546876 to 43547085 209 CpG island CpG island 10007
Cpgi10008 18 43582006 to 43582266 260 CpG island CpG island 10008
Tssr153169 18 43634788 to 43634792 4 - TSS region transcription start site region 153169
D18Mit194 18 43660827 to 43660951 124 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 194
Tssr153170 18 43687555 to 43687582 27 - TSS region transcription start site region 153170
Tssr153171 18 43687630 to 43687655 25 - TSS region transcription start site region 153171
Tssr153172 18 43687659 to 43687671 12 - TSS region transcription start site region 153172
Tssr5302 18 43687672 to 43687683 11 - TSS region transcription start site region 5302
Tssr153173 18 43687695 to 43687759 64 - TSS region transcription start site region 153173
Spink1 18 43728069 to 43737237 9168 - protein coding gene serine peptidase inhibitor, Kazal type 1
Tssr153174 18 43737167 to 43737180 13 - TSS region transcription start site region 153174
Tssr153175 18 43737186 to 43737214 28 - TSS region transcription start site region 153175
Tssr153176 18 43737306 to 43737333 27 - TSS region transcription start site region 153176
Tssr153177 18 43737503 to 43737511 8 - TSS region transcription start site region 153177
Tssr153178 18 43737525 to 43737532 7 - TSS region transcription start site region 153178
Tssr153179 18 43737557 to 43737565 8 - TSS region transcription start site region 153179
Gm23894 18 43761151 to 43761463 312 + unclassified non-coding RNA gene predicted gene, 23894
Scgb3a2 18 43764289 to 43767399 3110 + protein coding gene secretoglobin, family 3A, member 2
Tssr150893 18 43764317 to 43764333 16 + TSS region transcription start site region 150893
Gm94 18 43777196 to 43792878 15682 - protein coding gene predicted gene 94
Tssr153180 18 43792873 to 43792881 8 - TSS region transcription start site region 153180
Gm41715 18 43844642 to 43870414 25772 + lncRNA gene predicted gene, 41715
Tssr150894 18 43963234 to 43963252 18 + TSS region transcription start site region 150894
Spink5 18 43963235 to 44022501 59266 + protein coding gene serine peptidase inhibitor, Kazal type 5
Spink14 18 44027869 to 44032208 4339 + protein coding gene serine peptidase inhibitor, Kazal type 14
Gm8390 18 44061598 to 44062204 606 + pseudogene predicted gene 8390
Tssr150895 18 44071390 to 44071402 12 + TSS region transcription start site region 150895
Spink6 18 44071393 to 44083610 12217 + protein coding gene serine peptidase inhibitor, Kazal type 6
Tssr5303 18 44073573 to 44073585 12 + TSS region transcription start site region 5303
Tssr153181 18 44088488 to 44088499 11 - TSS region transcription start site region 153181