Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:42787816-44160169

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123 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ppp2r2b 18 42645221 to 43059471 414250 - protein coding gene protein phosphatase 2, regulatory subunit B, beta
Tssr153124 18 42862635 to 42862639 4 - TSS region transcription start site region 153124
Tssr153125 18 42867975 to 42867979 4 - TSS region transcription start site region 153125
Tssr153126 18 42877933 to 42877938 5 - TSS region transcription start site region 153126
Cpgi10000 18 42898525 to 42899693 1168 CpG island CpG island 10000
Tssr153127 18 42898936 to 42898975 39 - TSS region transcription start site region 153127
Tssr153128 18 42899006 to 42899044 38 - TSS region transcription start site region 153128
Tssr153129 18 42899306 to 42899317 11 - TSS region transcription start site region 153129
Tssr153130 18 42899326 to 42899337 11 - TSS region transcription start site region 153130
Tssr153131 18 42899452 to 42899463 11 - TSS region transcription start site region 153131
Tssr153132 18 42899470 to 42899539 69 - TSS region transcription start site region 153132
Smmq3 18 42923810 to 42923810 0 QTL soleus muscle mass QTL 3
4933407I08Rik 18 42935470 to 42938887 3417 + antisense lncRNA gene RIKEN cDNA 4933407I08 gene
Tssr153133 18 42938238 to 42938258 20 - TSS region transcription start site region 153133
Tssr5300 18 42952479 to 42952480 1 + TSS region transcription start site region 5300
4930572J10Rik 18 43038550 to 43171273 132723 lncRNA gene RIKEN cDNA 4930572J10 gene
Gm41712 18 43059417 to 43067590 8173 + lncRNA gene predicted gene, 41712
Tssr153134 18 43059418 to 43059466 48 - TSS region transcription start site region 153134
Tssr153135 18 43059527 to 43059538 11 - TSS region transcription start site region 153135
Tssr5301 18 43059564 to 43059569 5 - TSS region transcription start site region 5301
Tssr153136 18 43059617 to 43059642 25 - TSS region transcription start site region 153136
Gm22264 18 43070300 to 43070406 106 - snRNA gene predicted gene, 22264
Gm46622 18 43154736 to 43161986 7250 - lncRNA gene predicted gene, 46622
Gm8181 18 43171159 to 43171827 668 + pseudogene predicted gene 8181
Cpgi10001 18 43176235 to 43176471 236 CpG island CpG island 10001
Cpgi10002 18 43207444 to 43207906 462 CpG island CpG island 10002
Tssr150886 18 43207525 to 43207538 13 + TSS region transcription start site region 150886
Tssr150887 18 43207551 to 43207563 12 + TSS region transcription start site region 150887
Tssr150888 18 43207622 to 43207678 56 + TSS region transcription start site region 150888
Tssr150889 18 43207679 to 43207700 21 + TSS region transcription start site region 150889
Stk32a 18 43207697 to 43317481 109784 + protein coding gene serine/threonine kinase 32A
Tssr150890 18 43207710 to 43207721 11 + TSS region transcription start site region 150890
Tssr150891 18 43207724 to 43207737 13 + TSS region transcription start site region 150891
Gm31647 18 43246613 to 43250551 3938 - lncRNA gene predicted gene, 31647
Tssr150892 18 43265788 to 43265796 8 + TSS region transcription start site region 150892
Cpgi10003 18 43316688 to 43317154 466 CpG island CpG island 10003
Dpysl3 18 43320979 to 43438286 117307 - protein coding gene dihydropyrimidinase-like 3
Tssr153137 18 43321701 to 43321713 12 - TSS region transcription start site region 153137
Tssr153138 18 43322261 to 43322291 30 - TSS region transcription start site region 153138
Tssr153139 18 43322462 to 43322471 9 - TSS region transcription start site region 153139
Tssr153140 18 43322667 to 43322670 3 - TSS region transcription start site region 153140
Tssr153141 18 43323856 to 43323871 15 - TSS region transcription start site region 153141
Tssr153142 18 43324347 to 43324364 17 - TSS region transcription start site region 153142
Tssr153143 18 43325805 to 43325817 12 - TSS region transcription start site region 153143
Tssr153144 18 43328663 to 43328667 4 - TSS region transcription start site region 153144
Tssr153145 18 43345144 to 43345156 12 - TSS region transcription start site region 153145
Tssr153146 18 43354781 to 43354803 22 - TSS region transcription start site region 153146
C330024E10Rik 18 43359985 to 43360847 862 unclassified gene RIKEN cDNA C330024E10 gene
Tssr153147 18 43360995 to 43360999 4 - TSS region transcription start site region 153147
Tssr153148 18 43361063 to 43361072 9 - TSS region transcription start site region 153148
Tssr153149 18 43373193 to 43373204 11 - TSS region transcription start site region 153149
Tssr153150 18 43373217 to 43373245 28 - TSS region transcription start site region 153150
Tssr153151 18 43373248 to 43373267 19 - TSS region transcription start site region 153151
Tssr153152 18 43373292 to 43373293 1 - TSS region transcription start site region 153152
D18Mit202 18 43391935 to 43392045 110 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 202
Cpgi10004 18 43392496 to 43393779 1283 CpG island CpG island 10004
Tssr153153 18 43393051 to 43393137 86 - TSS region transcription start site region 153153
Tssr153154 18 43393138 to 43393150 12 - TSS region transcription start site region 153154
Tssr153155 18 43393151 to 43393170 19 - TSS region transcription start site region 153155
Tssr153156 18 43393186 to 43393218 32 - TSS region transcription start site region 153156
Tssr153157 18 43393261 to 43393275 14 - TSS region transcription start site region 153157
Tssr153158 18 43393278 to 43393298 20 - TSS region transcription start site region 153158
Tssr153159 18 43393346 to 43393381 35 - TSS region transcription start site region 153159
Gre1 18 43408013 to 46403932 2995919 QTL Glucocorticoid receptor expression 1
D18Mit163 18 43408013 to 43408159 146 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 163
Cpgi10005 18 43437733 to 43438558 825 CpG island CpG island 10005
Tssr153160 18 43438215 to 43438222 7 - TSS region transcription start site region 153160
Tssr153161 18 43438236 to 43438239 3 - TSS region transcription start site region 153161
Tssr153162 18 43438244 to 43438267 23 - TSS region transcription start site region 153162
Tssr153163 18 43438280 to 43438297 17 - TSS region transcription start site region 153163
Tssr153164 18 43438300 to 43438303 3 - TSS region transcription start site region 153164
Tssr153165 18 43438371 to 43438382 11 - TSS region transcription start site region 153165
Tssr153166 18 43438460 to 43438467 7 - TSS region transcription start site region 153166
Gm41714 18 43443776 to 43465462 21686 - lncRNA gene predicted gene, 41714
Gm3650 18 43472816 to 43475169 2353 + pseudogene predicted gene 3650
Eif3j2 18 43475418 to 43477796 2378 - protein coding gene eukaryotic translation initiation factor 3, subunit J2
Cpgi10006 18 43477528 to 43477892 364 CpG island CpG island 10006
Gm27325 18 43477704 to 43477777 73 - miRNA gene predicted gene, 27325
Tssr153167 18 43477764 to 43477801 37 - TSS region transcription start site region 153167
Jakmip2 18 43531408 to 43687773 156365 - protein coding gene janus kinase and microtubule interacting protein 2
Tssr153168 18 43546837 to 43546882 45 - TSS region transcription start site region 153168
Cpgi10007 18 43546876 to 43547085 209 CpG island CpG island 10007
Cpgi10008 18 43582006 to 43582266 260 CpG island CpG island 10008
Tssr153169 18 43634788 to 43634792 4 - TSS region transcription start site region 153169
D18Mit194 18 43660827 to 43660951 124 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 194
Tssr153170 18 43687555 to 43687582 27 - TSS region transcription start site region 153170
Tssr153171 18 43687630 to 43687655 25 - TSS region transcription start site region 153171
Tssr153172 18 43687659 to 43687671 12 - TSS region transcription start site region 153172
Tssr5302 18 43687672 to 43687683 11 - TSS region transcription start site region 5302
Tssr153173 18 43687695 to 43687759 64 - TSS region transcription start site region 153173
Spink1 18 43728069 to 43737237 9168 - protein coding gene serine peptidase inhibitor, Kazal type 1
Tssr153174 18 43737167 to 43737180 13 - TSS region transcription start site region 153174
Tssr153175 18 43737186 to 43737214 28 - TSS region transcription start site region 153175
Tssr153176 18 43737306 to 43737333 27 - TSS region transcription start site region 153176
Tssr153177 18 43737503 to 43737511 8 - TSS region transcription start site region 153177
Tssr153178 18 43737525 to 43737532 7 - TSS region transcription start site region 153178
Tssr153179 18 43737557 to 43737565 8 - TSS region transcription start site region 153179
Gm23894 18 43761151 to 43761463 312 + unclassified non-coding RNA gene predicted gene, 23894
Scgb3a2 18 43764289 to 43767399 3110 + protein coding gene secretoglobin, family 3A, member 2
Tssr150893 18 43764317 to 43764333 16 + TSS region transcription start site region 150893
Gm94 18 43777196 to 43792878 15682 - protein coding gene predicted gene 94
Tssr153180 18 43792873 to 43792881 8 - TSS region transcription start site region 153180
Gm41715 18 43844642 to 43870414 25772 + lncRNA gene predicted gene, 41715
Tssr150894 18 43963234 to 43963252 18 + TSS region transcription start site region 150894
Spink5 18 43963235 to 44022501 59266 + protein coding gene serine peptidase inhibitor, Kazal type 5
Spink14 18 44027869 to 44032208 4339 + protein coding gene serine peptidase inhibitor, Kazal type 14
Gm8390 18 44061598 to 44062204 606 + pseudogene predicted gene 8390
Tssr150895 18 44071390 to 44071402 12 + TSS region transcription start site region 150895
Spink6 18 44071393 to 44083610 12217 + protein coding gene serine peptidase inhibitor, Kazal type 6
Tssr5303 18 44073573 to 44073585 12 + TSS region transcription start site region 5303
Tssr153181 18 44088488 to 44088499 11 - TSS region transcription start site region 153181
Tssr150896 18 44101826 to 44101832 6 + TSS region transcription start site region 150896
Tssr150897 18 44104316 to 44104329 13 + TSS region transcription start site region 150897
Tssr150898 18 44104474 to 44104481 7 + TSS region transcription start site region 150898
Tssr150899 18 44104510 to 44104546 36 + TSS region transcription start site region 150899
Spink12 18 44104523 to 44108543 4020 + protein coding gene serine peptidase inhibitor, Kazal type 12
Tssr150900 18 44104548 to 44104559 11 + TSS region transcription start site region 150900
Tssr150901 18 44104649 to 44104666 17 + TSS region transcription start site region 150901
Tssr150902 18 44104684 to 44104698 14 + TSS region transcription start site region 150902
Tssr150903 18 44116189 to 44116196 7 + TSS region transcription start site region 150903
Gm37797 18 44116263 to 44119567 3304 + protein coding gene predicted gene, 37797
Gm10267 18 44156395 to 44159873 3478 - protein coding gene predicted gene 10267
Tssr153182 18 44159929 to 44159938 9 - TSS region transcription start site region 153182