Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:42365221-43339471

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi9993 18 42379485 to 42379735 250 CpG island CpG island 9993
Cpgi9994 18 42386060 to 42386443 383 CpG island CpG island 9994
Cpgi9995 18 42394254 to 42396125 1871 CpG island CpG island 9995
Tssr150875 18 42394367 to 42394370 3 + TSS region transcription start site region 150875
Tssr150876 18 42394472 to 42394481 9 + TSS region transcription start site region 150876
Tssr150877 18 42394562 to 42394575 13 + TSS region transcription start site region 150877
Pou4f3 18 42394597 to 42396093 1496 + protein coding gene POU domain, class 4, transcription factor 3
Tssr150878 18 42398382 to 42398386 4 + TSS region transcription start site region 150878
Gm31438 18 42398400 to 42433822 35422 + lncRNA gene predicted gene, 31438
Cpgi9996 18 42398655 to 42398899 244 CpG island CpG island 9996
Cpgi9997 18 42401199 to 42401711 512 CpG island CpG island 9997
Cpgi9998 18 42429333 to 42429558 225 CpG island CpG island 9998
Tssr150879 18 42440975 to 42440985 10 + TSS region transcription start site region 150879
Gm16415 18 42441019 to 42441507 488 + pseudogene predicted pseudogene 16415
Gm31501 18 42449285 to 42456575 7290 + lncRNA gene predicted gene, 31501
D18Mit37 18 42469413 to 42469582 169 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 37
Gm3631 18 42487080 to 42487655 575 + pseudogene predicted gene 3631
Cpgi9999 18 42510985 to 42512382 1397 CpG island CpG island 9999
Tssr150880 18 42511496 to 42511521 25 + TSS region transcription start site region 150880
Tcerg1 18 42511510 to 42575551 64041 + protein coding gene transcription elongation regulator 1 (CA150)
Tssr150881 18 42516218 to 42516223 5 + TSS region transcription start site region 150881
Tssr150882 18 42519080 to 42519087 7 + TSS region transcription start site region 150882
Tssr150883 18 42524219 to 42524243 24 + TSS region transcription start site region 150883
Tssr150884 18 42536258 to 42536270 12 + TSS region transcription start site region 150884
Tssr150885 18 42553405 to 42553415 10 + TSS region transcription start site region 150885
Gm27457 18 42574209 to 42574364 155 + unclassified non-coding RNA gene predicted gene, 27457
Gpr151 18 42578020 to 42579652 1632 - protein coding gene G protein-coupled receptor 151
Tssr153122 18 42579761 to 42579790 29 - TSS region transcription start site region 153122
Tssr153123 18 42579793 to 42579805 12 - TSS region transcription start site region 153123
C030004G16Rik 18 42615618 to 42622739 7121 - lncRNA gene RIKEN cDNA C030004G16 gene
Ppp2r2b 18 42645221 to 43059471 414250 - protein coding gene protein phosphatase 2, regulatory subunit B, beta
D18Mit23 18 42658002 to 42658145 143 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 23
Gm41713 18 42665658 to 42675016 9358 + lncRNA gene predicted gene, 41713
D18Ertd613e 18 42691326 to 42691550 224 DNA segment DNA segment, Chr 18, ERATO Doi 613, expressed
D18Mit148 18 42746954 to 42747153 199 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 148
Tssr153124 18 42862635 to 42862639 4 - TSS region transcription start site region 153124
Tssr153125 18 42867975 to 42867979 4 - TSS region transcription start site region 153125
Tssr153126 18 42877933 to 42877938 5 - TSS region transcription start site region 153126
Cpgi10000 18 42898525 to 42899693 1168 CpG island CpG island 10000
Tssr153127 18 42898936 to 42898975 39 - TSS region transcription start site region 153127
Tssr153128 18 42899006 to 42899044 38 - TSS region transcription start site region 153128
Tssr153129 18 42899306 to 42899317 11 - TSS region transcription start site region 153129
Tssr153130 18 42899326 to 42899337 11 - TSS region transcription start site region 153130
Tssr153131 18 42899452 to 42899463 11 - TSS region transcription start site region 153131
Tssr153132 18 42899470 to 42899539 69 - TSS region transcription start site region 153132
Smmq3 18 42923810 to 42923810 0 QTL soleus muscle mass QTL 3
4933407I08Rik 18 42935470 to 42938887 3417 + antisense lncRNA gene RIKEN cDNA 4933407I08 gene
Tssr153133 18 42938238 to 42938258 20 - TSS region transcription start site region 153133
Tssr5300 18 42952479 to 42952480 1 + TSS region transcription start site region 5300
4930572J10Rik 18 43038550 to 43171273 132723 lncRNA gene RIKEN cDNA 4930572J10 gene
Gm41712 18 43059417 to 43067590 8173 + lncRNA gene predicted gene, 41712
Tssr153134 18 43059418 to 43059466 48 - TSS region transcription start site region 153134
Tssr153135 18 43059527 to 43059538 11 - TSS region transcription start site region 153135
Tssr5301 18 43059564 to 43059569 5 - TSS region transcription start site region 5301
Tssr153136 18 43059617 to 43059642 25 - TSS region transcription start site region 153136
Gm22264 18 43070300 to 43070406 106 - snRNA gene predicted gene, 22264
Gm46622 18 43154736 to 43161986 7250 - lncRNA gene predicted gene, 46622
Gm8181 18 43171159 to 43171827 668 + pseudogene predicted gene 8181
Cpgi10001 18 43176235 to 43176471 236 CpG island CpG island 10001
Cpgi10002 18 43207444 to 43207906 462 CpG island CpG island 10002
Tssr150886 18 43207525 to 43207538 13 + TSS region transcription start site region 150886
Tssr150887 18 43207551 to 43207563 12 + TSS region transcription start site region 150887
Tssr150888 18 43207622 to 43207678 56 + TSS region transcription start site region 150888
Tssr150889 18 43207679 to 43207700 21 + TSS region transcription start site region 150889
Stk32a 18 43207697 to 43317481 109784 + protein coding gene serine/threonine kinase 32A
Tssr150890 18 43207710 to 43207721 11 + TSS region transcription start site region 150890
Tssr150891 18 43207724 to 43207737 13 + TSS region transcription start site region 150891
Gm31647 18 43246613 to 43250551 3938 - lncRNA gene predicted gene, 31647
Tssr150892 18 43265788 to 43265796 8 + TSS region transcription start site region 150892
Cpgi10003 18 43316688 to 43317154 466 CpG island CpG island 10003
Dpysl3 18 43320979 to 43438286 117307 - protein coding gene dihydropyrimidinase-like 3
Tssr153137 18 43321701 to 43321713 12 - TSS region transcription start site region 153137
Tssr153138 18 43322261 to 43322291 30 - TSS region transcription start site region 153138
Tssr153139 18 43322462 to 43322471 9 - TSS region transcription start site region 153139
Tssr153140 18 43322667 to 43322670 3 - TSS region transcription start site region 153140
Tssr153141 18 43323856 to 43323871 15 - TSS region transcription start site region 153141
Tssr153142 18 43324347 to 43324364 17 - TSS region transcription start site region 153142
Tssr153143 18 43325805 to 43325817 12 - TSS region transcription start site region 153143
Tssr153144 18 43328663 to 43328667 4 - TSS region transcription start site region 153144