Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:42156258-42916270

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sh3rf2 18 42053667 to 42158960 105293 + protein coding gene SH3 domain containing ring finger 2
Tssr5298 18 42173317 to 42173323 6 + TSS region transcription start site region 5298
Cstdc7 18 42173370 to 42173663 293 + pseudogene cystatin domain containing 7
Plac8l1 18 42178675 to 42196709 18034 - protein coding gene PLAC8-like 1
Gm18086 18 42186175 to 42187772 1597 - pseudogene predicted gene, 18086
Tssr153111 18 42196680 to 42196698 18 - TSS region transcription start site region 153111
Tssr153112 18 42196699 to 42196739 40 - TSS region transcription start site region 153112
Tssr5299 18 42196743 to 42196747 4 - TSS region transcription start site region 5299
Gm5504 18 42200659 to 42201592 933 + pseudogene predicted gene 5504
Lars 18 42202350 to 42262122 59772 - protein coding gene leucyl-tRNA synthetase
Cpgi9990 18 42202441 to 42203007 566 CpG island CpG island 9990
Tssr153113 18 42216926 to 42216945 19 - TSS region transcription start site region 153113
Tssr153114 18 42229863 to 42229872 9 - TSS region transcription start site region 153114
Tssr153115 18 42249465 to 42249468 3 - TSS region transcription start site region 153115
Rps19-ps4 18 42252398 to 42252835 437 + pseudogene ribosomal protein S19, pseudogene 4
Tssr153116 18 42253761 to 42253768 7 - TSS region transcription start site region 153116
Cpgi9991 18 42261726 to 42262501 775 CpG island CpG island 9991
Tssr153117 18 42261978 to 42262013 35 - TSS region transcription start site region 153117
Tssr153118 18 42262053 to 42262140 87 - TSS region transcription start site region 153118
Tssr153119 18 42262142 to 42262153 11 - TSS region transcription start site region 153119
Gm4013 18 42274380 to 42275197 817 - lncRNA gene predicted gene 4013
Cpgi9992 18 42274931 to 42276042 1111 CpG island CpG island 9992
Tssr153120 18 42275121 to 42275135 14 - TSS region transcription start site region 153120
Tssr153121 18 42275169 to 42275212 43 - TSS region transcription start site region 153121
Rbm27 18 42275353 to 42341542 66189 + protein coding gene RNA binding motif protein 27
Tssr150870 18 42275369 to 42275392 23 + TSS region transcription start site region 150870
Tssr150871 18 42275397 to 42275411 14 + TSS region transcription start site region 150871
Gm22697 18 42301890 to 42301952 62 + miRNA gene predicted gene, 22697
D18Mit72 18 42319341 to 42319492 151 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 72
Tssr150872 18 42319883 to 42319919 36 + TSS region transcription start site region 150872
Tssr150873 18 42325976 to 42325987 11 + TSS region transcription start site region 150873
Tssr150874 18 42338962 to 42338966 4 + TSS region transcription start site region 150874
Cpgi9993 18 42379485 to 42379735 250 CpG island CpG island 9993
Cpgi9994 18 42386060 to 42386443 383 CpG island CpG island 9994
Cpgi9995 18 42394254 to 42396125 1871 CpG island CpG island 9995
Tssr150875 18 42394367 to 42394370 3 + TSS region transcription start site region 150875
Tssr150876 18 42394472 to 42394481 9 + TSS region transcription start site region 150876
Tssr150877 18 42394562 to 42394575 13 + TSS region transcription start site region 150877
Pou4f3 18 42394597 to 42396093 1496 + protein coding gene POU domain, class 4, transcription factor 3
Tssr150878 18 42398382 to 42398386 4 + TSS region transcription start site region 150878
Gm31438 18 42398400 to 42433822 35422 + lncRNA gene predicted gene, 31438
Cpgi9996 18 42398655 to 42398899 244 CpG island CpG island 9996
Cpgi9997 18 42401199 to 42401711 512 CpG island CpG island 9997
Cpgi9998 18 42429333 to 42429558 225 CpG island CpG island 9998
Tssr150879 18 42440975 to 42440985 10 + TSS region transcription start site region 150879
Gm16415 18 42441019 to 42441507 488 + pseudogene predicted pseudogene 16415
Gm31501 18 42449285 to 42456575 7290 + lncRNA gene predicted gene, 31501
D18Mit37 18 42469413 to 42469582 169 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 37
Gm3631 18 42487080 to 42487655 575 + pseudogene predicted gene 3631
Cpgi9999 18 42510985 to 42512382 1397 CpG island CpG island 9999
Tssr150880 18 42511496 to 42511521 25 + TSS region transcription start site region 150880
Tcerg1 18 42511510 to 42575551 64041 + protein coding gene transcription elongation regulator 1 (CA150)
Tssr150881 18 42516218 to 42516223 5 + TSS region transcription start site region 150881
Tssr150882 18 42519080 to 42519087 7 + TSS region transcription start site region 150882
Tssr150883 18 42524219 to 42524243 24 + TSS region transcription start site region 150883
Tssr150884 18 42536258 to 42536270 12 + TSS region transcription start site region 150884
Tssr150885 18 42553405 to 42553415 10 + TSS region transcription start site region 150885
Gm27457 18 42574209 to 42574364 155 + unclassified non-coding RNA gene predicted gene, 27457
Gpr151 18 42578020 to 42579652 1632 - protein coding gene G protein-coupled receptor 151
Tssr153122 18 42579761 to 42579790 29 - TSS region transcription start site region 153122
Tssr153123 18 42579793 to 42579805 12 - TSS region transcription start site region 153123
C030004G16Rik 18 42615618 to 42622739 7121 - lncRNA gene RIKEN cDNA C030004G16 gene
Ppp2r2b 18 42645221 to 43059471 414250 - protein coding gene protein phosphatase 2, regulatory subunit B, beta
D18Mit23 18 42658002 to 42658145 143 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 23
Gm41713 18 42665658 to 42675016 9358 + lncRNA gene predicted gene, 41713
D18Ertd613e 18 42691326 to 42691550 224 DNA segment DNA segment, Chr 18, ERATO Doi 613, expressed
D18Mit148 18 42746954 to 42747153 199 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 148
Tssr153124 18 42862635 to 42862639 4 - TSS region transcription start site region 153124
Tssr153125 18 42867975 to 42867979 4 - TSS region transcription start site region 153125
Tssr153126 18 42877933 to 42877938 5 - TSS region transcription start site region 153126
Cpgi10000 18 42898525 to 42899693 1168 CpG island CpG island 10000
Tssr153127 18 42898936 to 42898975 39 - TSS region transcription start site region 153127
Tssr153128 18 42899006 to 42899044 38 - TSS region transcription start site region 153128
Tssr153129 18 42899306 to 42899317 11 - TSS region transcription start site region 153129
Tssr153130 18 42899326 to 42899337 11 - TSS region transcription start site region 153130
Tssr153131 18 42899452 to 42899463 11 - TSS region transcription start site region 153131
Tssr153132 18 42899470 to 42899539 69 - TSS region transcription start site region 153132