Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:4209767-6459835

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173 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr152311 18 4239211 to 4239220 9 - TSS region transcription start site region 152311
Tssr152312 18 4239248 to 4239254 6 - TSS region transcription start site region 152312
Gm41657 18 4244121 to 4250779 6658 - lncRNA gene predicted gene, 41657
Gm7400 18 4293099 to 4294482 1383 - pseudogene predicted gene 7400
Tssr149903 18 4322668 to 4322671 3 + TSS region transcription start site region 149903
Map3k8 18 4331327 to 4353015 21688 - protein coding gene mitogen-activated protein kinase kinase kinase 8
Tssr152313 18 4336289 to 4336298 9 - TSS region transcription start site region 152313
Cpgi9666 18 4352815 to 4353669 854 CpG island CpG island 9666
Tssr152314 18 4352916 to 4352923 7 - TSS region transcription start site region 152314
Tssr152315 18 4352944 to 4352962 18 - TSS region transcription start site region 152315
Tssr149904 18 4353061 to 4353072 11 + TSS region transcription start site region 149904
Tssr152316 18 4353226 to 4353238 12 - TSS region transcription start site region 152316
Tssr152317 18 4353245 to 4353256 11 - TSS region transcription start site region 152317
Tssr152318 18 4353282 to 4353330 48 - TSS region transcription start site region 152318
Tssr152319 18 4353335 to 4353352 17 - TSS region transcription start site region 152319
Tssr152320 18 4353412 to 4353431 19 - TSS region transcription start site region 152320
Tssr149905 18 4353537 to 4353554 17 + TSS region transcription start site region 149905
4833419F23Rik 18 4353558 to 4368920 15362 + lncRNA gene RIKEN cDNA 4833419F23 gene
Tssr149906 18 4353581 to 4353592 11 + TSS region transcription start site region 149906
Tssr149907 18 4353608 to 4353631 23 + TSS region transcription start site region 149907
Gm50096 18 4353644 to 4380723 27079 + unclassified gene predicted gene, 50096
Tssr149908 18 4366923 to 4366934 11 + TSS region transcription start site region 149908
Gm26865 18 4373669 to 4379985 6316 - lincRNA gene predicted gene, 26865
Cpgi9667 18 4375471 to 4376173 702 CpG island CpG island 9667
Tssr149909 18 4375583 to 4375623 40 + TSS region transcription start site region 149909
Mtpap 18 4375592 to 4397330 21738 + protein coding gene mitochondrial poly(A) polymerase
Tssr149910 18 4396775 to 4396781 6 + TSS region transcription start site region 149910
Gm50023 18 4399328 to 4400910 1582 + lincRNA gene predicted gene, 50023
Gm7411 18 4484506 to 4485501 995 + pseudogene predicted gene 7411
Tssr149911 18 4484717 to 4484727 10 + TSS region transcription start site region 149911
Gm41658 18 4541612 to 4562599 20987 - lncRNA gene predicted gene, 41658
Tssr149912 18 4563123 to 4563130 7 + TSS region transcription start site region 149912
Tssr149913 18 4590731 to 4590759 28 + TSS region transcription start site region 149913
Gm50024 18 4590763 to 4616064 25301 + lincRNA gene predicted gene, 50024
Cpgi9668 18 4634414 to 4635768 1354 CpG island CpG island 9668
Jcad 18 4634878 to 4682869 47991 + protein coding gene junctional cadherin 5 associated
Tssr149914 18 4634912 to 4634974 62 + TSS region transcription start site region 149914
Tssr149915 18 4634977 to 4634990 13 + TSS region transcription start site region 149915
Tssr149916 18 4636532 to 4636553 21 + TSS region transcription start site region 149916
Tssr149917 18 4743053 to 4743061 8 + TSS region transcription start site region 149917
Gm5047 18 4743076 to 4743876 800 + pseudogene predicted gene 5047
Gm10556 18 4812486 to 4850959 38473 + lincRNA gene predicted gene 10556
Gm34269 18 4820303 to 4826659 6356 - lncRNA gene predicted gene, 34269
Gm41659 18 4869777 to 4912263 42486 + lncRNA gene predicted gene, 41659
Tssr149918 18 4908906 to 4908940 34 + TSS region transcription start site region 149918
Tssr149919 18 4908944 to 4908963 19 + TSS region transcription start site region 149919
Tssr149920 18 4908965 to 4908974 9 + TSS region transcription start site region 149920
Tssr5237 18 4909199 to 4909207 8 + TSS region transcription start site region 5237
D18Mit165 18 4919199 to 4919513 314 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 165
Cpgi9669 18 4920095 to 4922371 2276 CpG island CpG island 9669
Tssr149921 18 4920509 to 4920586 77 + TSS region transcription start site region 149921
Svil 18 4920540 to 5119299 198759 + protein coding gene supervillin
Tssr149922 18 4920623 to 4920642 19 + TSS region transcription start site region 149922
Tssr149923 18 4920690 to 4920706 16 + TSS region transcription start site region 149923
Tssr149924 18 4920721 to 4920733 12 + TSS region transcription start site region 149924
Tssr149925 18 4921542 to 4921570 28 + TSS region transcription start site region 149925
Tssr149926 18 4921662 to 4921690 28 + TSS region transcription start site region 149926
Tssr149927 18 4928783 to 4928800 17 + TSS region transcription start site region 149927
BC025933 18 4959635 to 4960299 664 protein coding gene cDNA sequence BC025933
Tssr149928 18 4980587 to 4980598 11 + TSS region transcription start site region 149928
Tssr149929 18 4980600 to 4980627 27 + TSS region transcription start site region 149929
Tssr149930 18 4993777 to 4993789 12 + TSS region transcription start site region 149930
Tssr149931 18 4993795 to 4993819 24 + TSS region transcription start site region 149931
Tssr149932 18 4993837 to 4993854 17 + TSS region transcription start site region 149932
Tssr149933 18 4993870 to 4993880 10 + TSS region transcription start site region 149933
Tssr149934 18 4994600 to 4994623 23 + TSS region transcription start site region 149934
Tssr149935 18 4994640 to 4994669 29 + TSS region transcription start site region 149935
Tssr149936 18 4994670 to 4994706 36 + TSS region transcription start site region 149936
Tssr149937 18 4994710 to 4994717 7 + TSS region transcription start site region 149937
Tssr149938 18 4994890 to 4994901 11 + TSS region transcription start site region 149938
Tssr149939 18 4994903 to 4994943 40 + TSS region transcription start site region 149939
Tssr149940 18 4994972 to 4994983 11 + TSS region transcription start site region 149940
Tssr149941 18 4995009 to 4995014 5 + TSS region transcription start site region 149941
Tssr149942 18 5035071 to 5035114 43 + TSS region transcription start site region 149942
W3q15 18 5041119 to 61139571 56098452 QTL weight 3 weeks QTL 15
D18Mit19 18 5041119 to 5041269 150 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 19
Gm34326 18 5042818 to 5048867 6049 - lncRNA gene predicted gene, 34326
Tssr149943 18 5125610 to 5125615 5 + TSS region transcription start site region 149943
Gm34541 18 5139349 to 5142068 2719 + lncRNA gene predicted gene, 34541
Gm26682 18 5141762 to 5142801 1039 - lincRNA gene predicted gene, 26682
Cpgi9670 18 5162226 to 5162716 490 CpG island CpG island 9670
Cpgi9671 18 5162989 to 5163731 742 CpG island CpG island 9671
Zfp438 18 5210029 to 5334807 124778 - protein coding gene zinc finger protein 438
Tssr152321 18 5273257 to 5273276 19 - TSS region transcription start site region 152321
Tssr152322 18 5273278 to 5273299 21 - TSS region transcription start site region 152322
Tssr5238 18 5273312 to 5273318 6 - TSS region transcription start site region 5238
Tssr152323 18 5273321 to 5273325 4 - TSS region transcription start site region 152323
Cpgi9672 18 5333852 to 5334977 1125 CpG island CpG island 9672
Tssr152324 18 5334309 to 5334331 22 - TSS region transcription start site region 152324
Tssr152325 18 5334364 to 5334410 46 - TSS region transcription start site region 152325
Tssr152326 18 5334739 to 5334751 12 - TSS region transcription start site region 152326
Tssr152327 18 5334767 to 5334835 68 - TSS region transcription start site region 152327
D18Mit109 18 5336017 to 5336186 169 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 109
Gm50064 18 5348258 to 5361861 13603 - lincRNA gene predicted gene, 50064
Gm50065 18 5368541 to 5370482 1941 - lincRNA gene predicted gene, 50065
Gm34630 18 5389802 to 5402870 13068 - lncRNA gene predicted gene, 34630
Tssr152328 18 5404430 to 5404437 7 - TSS region transcription start site region 152328
Tssr152329 18 5404498 to 5404502 4 - TSS region transcription start site region 152329
Tssr152330 18 5404575 to 5404589 14 - TSS region transcription start site region 152330
Gm10125 18 5491501 to 5592437 100936 - lncRNA gene predicted gene 10125
Gm26575 18 5572824 to 5575055 2231 - sense intronic lncRNA gene predicted gene, 26575
Gm2238 18 5588043 to 5591711 3668 - unclassified gene predicted gene 2238
Cpgi9673 18 5591170 to 5593432 2262 CpG island CpG island 9673
Tssr149944 18 5591391 to 5591408 17 + TSS region transcription start site region 149944
Tssr149945 18 5591426 to 5591446 20 + TSS region transcription start site region 149945
Zeb1 18 5591860 to 5775467 183607 + protein coding gene zinc finger E-box binding homeobox 1
Tssr149946 18 5591868 to 5591902 34 + TSS region transcription start site region 149946
Tssr149947 18 5591910 to 5591919 9 + TSS region transcription start site region 149947
Tssr152331 18 5592431 to 5592469 38 - TSS region transcription start site region 152331
Tssr149948 18 5593347 to 5593351 4 + TSS region transcription start site region 149948
Tssr152332 18 5593377 to 5593388 11 - TSS region transcription start site region 152332
Tssr152333 18 5593429 to 5593455 26 - TSS region transcription start site region 152333
Tssr149949 18 5593566 to 5593586 20 + TSS region transcription start site region 149949
Tssr152334 18 5593795 to 5593814 19 - TSS region transcription start site region 152334
Tssr149950 18 5593882 to 5593900 18 + TSS region transcription start site region 149950
Tssr152335 18 5593909 to 5593917 8 - TSS region transcription start site region 152335
Tssr152336 18 5593927 to 5593942 15 - TSS region transcription start site region 152336
Tssr149951 18 5594199 to 5594230 31 + TSS region transcription start site region 149951
Tssr149952 18 5603739 to 5603761 22 + TSS region transcription start site region 149952
Tssr149953 18 5603762 to 5603776 14 + TSS region transcription start site region 149953
Gm16147 18 5611558 to 5611930 372 - pseudogene predicted gene 16147
Gm22709 18 5614473 to 5614583 110 + miRNA gene predicted gene, 22709
Tssr149954 18 5625968 to 5625972 4 + TSS region transcription start site region 149954
Tssr149955 18 5669262 to 5669269 7 + TSS region transcription start site region 149955
Tssr5239 18 5671156 to 5671159 3 + TSS region transcription start site region 5239
Tssr149956 18 5688820 to 5688823 3 + TSS region transcription start site region 149956
Tssr5240 18 5721377 to 5721384 7 + TSS region transcription start site region 5240
Tssr149957 18 5772694 to 5772707 13 + TSS region transcription start site region 149957
Cpgi9674 18 5819722 to 5820132 410 CpG island CpG island 9674
Gm34740 18 5885791 to 5889876 4085 - lncRNA gene predicted gene, 34740
Gm34804 18 5956746 to 5966908 10162 + lncRNA gene predicted gene, 34804
D18Mit219 18 5976166 to 5976329 163 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 219
Cpgi9675 18 5989558 to 5990320 762 CpG island CpG island 9675
Gm41663 18 6004578 to 6015278 10700 + lncRNA gene predicted gene, 41663
Gm41662 18 6014254 to 6015021 767 - lncRNA gene predicted gene, 41662
Arhgap12 18 6024448 to 6136098 111650 - protein coding gene Rho GTPase activating protein 12
Gm19240 18 6029179 to 6030456 1277 - pseudogene predicted gene, 19240
Tssr152337 18 6039401 to 6039413 12 - TSS region transcription start site region 152337
Gm18278 18 6095387 to 6096116 729 pseudogene predicted gene, 18278
Tssr149958 18 6101642 to 6101644 2 + TSS region transcription start site region 149958
D18Mit64 18 6108404 to 6108555 151 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 64
Rafaril 18 6108404 to 6108555 151 QTL Rafar interacting locus
Tssr152338 18 6135227 to 6135230 3 - TSS region transcription start site region 152338
Cpgi9676 18 6135286 to 6136815 1529 CpG island CpG island 9676
Tssr152339 18 6135859 to 6135870 11 - TSS region transcription start site region 152339
Tssr152340 18 6135896 to 6135999 103 - TSS region transcription start site region 152340
Tssr152341 18 6136057 to 6136068 11 - TSS region transcription start site region 152341
Tssr149959 18 6136420 to 6136427 7 + TSS region transcription start site region 149959
Kif5b 18 6201005 to 6241524 40519 - protein coding gene kinesin family member 5B
Gm17036 18 6213913 to 6227324 13411 + antisense lncRNA gene predicted gene 17036
Tssr152342 18 6214604 to 6214617 13 - TSS region transcription start site region 152342
Tssr152343 18 6216899 to 6216931 32 - TSS region transcription start site region 152343
Tssr152344 18 6220869 to 6220881 12 - TSS region transcription start site region 152344
Tssr152345 18 6220924 to 6220933 9 - TSS region transcription start site region 152345
Tssr152346 18 6220985 to 6220999 14 - TSS region transcription start site region 152346
Tssr152347 18 6222827 to 6222866 39 - TSS region transcription start site region 152347
Tssr152348 18 6223687 to 6223698 11 - TSS region transcription start site region 152348
Tssr152349 18 6224045 to 6224065 20 - TSS region transcription start site region 152349
Tssr152350 18 6224070 to 6224083 13 - TSS region transcription start site region 152350
Tssr152351 18 6225344 to 6225362 18 - TSS region transcription start site region 152351
Tssr152352 18 6226960 to 6226971 11 - TSS region transcription start site region 152352
Cpgi9677 18 6240682 to 6241714 1032 CpG island CpG island 9677
Gm41664 18 6240814 to 6268387 27573 + lncRNA gene predicted gene, 41664
Tssr152353 18 6241164 to 6241214 50 - TSS region transcription start site region 152353
Tssr152354 18 6241238 to 6241307 69 - TSS region transcription start site region 152354
Tssr152355 18 6241471 to 6241482 11 - TSS region transcription start site region 152355
Tssr152356 18 6241486 to 6241550 64 - TSS region transcription start site region 152356
Tssr149960 18 6332587 to 6332609 22 + TSS region transcription start site region 149960
Rpl27-ps3 18 6332632 to 6333042 410 + pseudogene ribosomal protein L27, pseudogene 3
Gm49986 18 6368360 to 6368797 437 + pseudogene predicted gene, 49986
Gm6291 18 6371352 to 6371660 308 - pseudogene predicted gene 6291
Epc1 18 6435951 to 6516108 80157 - protein coding gene enhancer of polycomb homolog 1
Idd21.3 18 21513420 to 6108404 -15405016 QTL insulin dependent diabetes susceptibility 21.3