Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:39643279-42283552

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107 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm30961 18 39636305 to 39656217 19912 + lncRNA gene predicted gene, 30961
D18Mit201 18 39646486 to 39646600 114 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 201
Tssr153100 18 39661208 to 39661214 6 - TSS region transcription start site region 153100
D18Mit89 18 39677426 to 39677568 142 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 89
Tssr5294 18 39701518 to 39701537 19 + TSS region transcription start site region 5294
Tssr153101 18 39734957 to 39734963 6 - TSS region transcription start site region 153101
Cpgi9984 18 39773426 to 39773955 529 CpG island CpG island 9984
Pabpc2 18 39773497 to 39776082 2585 + protein coding gene poly(A) binding protein, cytoplasmic 2
Tssr150837 18 39773505 to 39773576 71 + TSS region transcription start site region 150837
Tssr150838 18 39773578 to 39773594 16 + TSS region transcription start site region 150838
Tssr150839 18 39773600 to 39773605 5 + TSS region transcription start site region 150839
Tssr150840 18 39774833 to 39774870 37 + TSS region transcription start site region 150840
Tssr150841 18 39791921 to 39791925 4 + TSS region transcription start site region 150841
Gm41707 18 39804830 to 39871031 66201 + lncRNA gene predicted gene, 41707
Gm41708 18 39906454 to 39929433 22979 - lncRNA gene predicted gene, 41708
Yipf5 18 40204865 to 40219399 14534 - protein coding gene Yip1 domain family, member 5
Cpgi9985 18 40218867 to 40219700 833 CpG island CpG island 9985
Tssr153102 18 40219324 to 40219369 45 - TSS region transcription start site region 153102
Gm31087 18 40242893 to 40246936 4043 - lncRNA gene predicted gene, 31087
Tssr150842 18 40256289 to 40256309 20 + TSS region transcription start site region 150842
Cpgi9986 18 40256702 to 40257129 427 CpG island CpG island 9986
Tssr150843 18 40256870 to 40256882 12 + TSS region transcription start site region 150843
Tssr150844 18 40256947 to 40256951 4 + TSS region transcription start site region 150844
Tssr150845 18 40256960 to 40257018 58 + TSS region transcription start site region 150845
2900055J20Rik 18 40256962 to 40257684 722 + unclassified gene RIKEN cDNA 2900055J20 gene
Tssr150846 18 40257031 to 40257042 11 + TSS region transcription start site region 150846
Kctd16 18 40258361 to 40531168 272807 + protein coding gene potassium channel tetramerisation domain containing 16
Tssr150847 18 40265807 to 40265814 7 + TSS region transcription start site region 150847
Tssr150848 18 40270540 to 40270549 9 + TSS region transcription start site region 150848
Tssr150849 18 40271674 to 40271677 3 + TSS region transcription start site region 150849
Tssr150850 18 40306068 to 40306080 12 + TSS region transcription start site region 150850
Tssr150851 18 40306235 to 40306248 13 + TSS region transcription start site region 150851
Tssr150852 18 40308205 to 40308229 24 + TSS region transcription start site region 150852
Tssr150853 18 40332478 to 40332483 5 + TSS region transcription start site region 150853
Tssr150854 18 40333235 to 40333239 4 + TSS region transcription start site region 150854
D18Mit227 18 40427082 to 40427203 121 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 227
Tssr150855 18 40512986 to 40513003 17 + TSS region transcription start site region 150855
Tssr150856 18 40513024 to 40513027 3 + TSS region transcription start site region 150856
Tssr150857 18 40523096 to 40523107 11 + TSS region transcription start site region 150857
Tssr150858 18 40530749 to 40530770 21 + TSS region transcription start site region 150858
C030017B01Rik 18 40539785 to 40543017 3232 unclassified gene RIKEN cDNA C030017B01 gene
Tssr150859 18 40541397 to 40541408 11 + TSS region transcription start site region 150859
Tssr150860 18 40721507 to 40721516 9 + TSS region transcription start site region 150860
Gm31205 18 40721525 to 40778105 56580 + lncRNA gene predicted gene, 31205
Rps19-ps13 18 40726269 to 40726709 440 + pseudogene ribosomal protein S19, pseudogene 13
Gm41710 18 40780069 to 40811782 31713 + lncRNA gene predicted gene, 41710
Tssr150861 18 40792714 to 40792716 2 + TSS region transcription start site region 150861
Gm22515 18 40801161 to 40801465 304 - unclassified non-coding RNA gene predicted gene, 22515
Tssr153103 18 40923767 to 40923778 11 - TSS region transcription start site region 153103
Tssr153104 18 40923805 to 40923818 13 - TSS region transcription start site region 153104
Tssr153105 18 40923843 to 40923864 21 - TSS region transcription start site region 153105
Gm22483 18 40963279 to 40963552 273 + unclassified non-coding RNA gene predicted gene, 22483
Moen1 18 40982507 to 40982677 170 QTL modifier of engrailed QTL 1
D18Mit177 18 40982507 to 40982677 170 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 177
Gm44476 18 41342281 to 41342371 90 - miRNA gene predicted gene, 44476
Tssr5295 18 41573334 to 41573335 1 - TSS region transcription start site region 5295
Tssr150862 18 41579476 to 41579482 6 + TSS region transcription start site region 150862
Gm18530 18 41639787 to 41640823 1036 + pseudogene predicted gene, 18530
Prelid2 18 41875696 to 41951194 75498 - protein coding gene PRELI domain containing 2
Gm18371 18 41892994 to 41895410 2416 - pseudogene predicted gene, 18371
Tssr5296 18 41916564 to 41916569 5 + TSS region transcription start site region 5296
D18Mit104 18 41932519 to 41932667 148 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 104
Cpgi9988 18 41950730 to 41951439 709 CpG island CpG island 9988
Tssr153106 18 41951161 to 41951180 19 - TSS region transcription start site region 153106
Tssr153107 18 41951187 to 41951232 45 - TSS region transcription start site region 153107
Tssr153108 18 41982538 to 41982574 36 - TSS region transcription start site region 153108
Grxcr2 18 41986201 to 41999049 12848 - protein coding gene glutaredoxin, cysteine rich 2
Tssr153109 18 41998973 to 41998976 3 - TSS region transcription start site region 153109
Tssr153110 18 41999043 to 41999055 12 - TSS region transcription start site region 153110
Cpgi9989 18 42016566 to 42016827 261 CpG island CpG island 9989
Tssr5297 18 42052455 to 42052466 11 + TSS region transcription start site region 5297
Tssr150863 18 42052475 to 42052487 12 + TSS region transcription start site region 150863
D18Mit114 18 42052827 to 42052968 141 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 114
D18Mit113 18 42052827 to 42052945 118 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 113
Tssr150864 18 42053648 to 42053662 14 + TSS region transcription start site region 150864
Sh3rf2 18 42053667 to 42158960 105293 + protein coding gene SH3 domain containing ring finger 2
Tssr150865 18 42053675 to 42053689 14 + TSS region transcription start site region 150865
Tssr150866 18 42053692 to 42053724 32 + TSS region transcription start site region 150866
Tssr150867 18 42053727 to 42053738 11 + TSS region transcription start site region 150867
Tssr150868 18 42141902 to 42141919 17 + TSS region transcription start site region 150868
Tssr150869 18 42143027 to 42143039 12 + TSS region transcription start site region 150869
Tssr5298 18 42173317 to 42173323 6 + TSS region transcription start site region 5298
Cstdc7 18 42173370 to 42173663 293 + pseudogene cystatin domain containing 7
Plac8l1 18 42178675 to 42196709 18034 - protein coding gene PLAC8-like 1
Gm18086 18 42186175 to 42187772 1597 - pseudogene predicted gene, 18086
Tssr153111 18 42196680 to 42196698 18 - TSS region transcription start site region 153111
Tssr153112 18 42196699 to 42196739 40 - TSS region transcription start site region 153112
Tssr5299 18 42196743 to 42196747 4 - TSS region transcription start site region 5299
Gm5504 18 42200659 to 42201592 933 + pseudogene predicted gene 5504
Lars 18 42202350 to 42262122 59772 - protein coding gene leucyl-tRNA synthetase
Cpgi9990 18 42202441 to 42203007 566 CpG island CpG island 9990
Tssr153113 18 42216926 to 42216945 19 - TSS region transcription start site region 153113
Tssr153114 18 42229863 to 42229872 9 - TSS region transcription start site region 153114
Tssr153115 18 42249465 to 42249468 3 - TSS region transcription start site region 153115
Rps19-ps4 18 42252398 to 42252835 437 + pseudogene ribosomal protein S19, pseudogene 4
Tssr153116 18 42253761 to 42253768 7 - TSS region transcription start site region 153116
Cpgi9991 18 42261726 to 42262501 775 CpG island CpG island 9991
Tssr153117 18 42261978 to 42262013 35 - TSS region transcription start site region 153117
Tssr153118 18 42262053 to 42262140 87 - TSS region transcription start site region 153118
Tssr153119 18 42262142 to 42262153 11 - TSS region transcription start site region 153119
Gm4013 18 42274380 to 42275197 817 - lncRNA gene predicted gene 4013
Cpgi9992 18 42274931 to 42276042 1111 CpG island CpG island 9992
Tssr153120 18 42275121 to 42275135 14 - TSS region transcription start site region 153120
Tssr153121 18 42275169 to 42275212 43 - TSS region transcription start site region 153121
Rbm27 18 42275353 to 42341542 66189 + protein coding gene RNA binding motif protein 27
Tssr150870 18 42275369 to 42275392 23 + TSS region transcription start site region 150870
Tssr150871 18 42275397 to 42275411 14 + TSS region transcription start site region 150871