Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:39626289-40886309

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm30961 18 39636305 to 39656217 19912 + lncRNA gene predicted gene, 30961
D18Mit201 18 39646486 to 39646600 114 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 201
Tssr153100 18 39661208 to 39661214 6 - TSS region transcription start site region 153100
D18Mit89 18 39677426 to 39677568 142 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 89
Tssr5294 18 39701518 to 39701537 19 + TSS region transcription start site region 5294
Tssr153101 18 39734957 to 39734963 6 - TSS region transcription start site region 153101
Cpgi9984 18 39773426 to 39773955 529 CpG island CpG island 9984
Pabpc2 18 39773497 to 39776082 2585 + protein coding gene poly(A) binding protein, cytoplasmic 2
Tssr150837 18 39773505 to 39773576 71 + TSS region transcription start site region 150837
Tssr150838 18 39773578 to 39773594 16 + TSS region transcription start site region 150838
Tssr150839 18 39773600 to 39773605 5 + TSS region transcription start site region 150839
Tssr150840 18 39774833 to 39774870 37 + TSS region transcription start site region 150840
Tssr150841 18 39791921 to 39791925 4 + TSS region transcription start site region 150841
Gm41707 18 39804830 to 39871031 66201 + lncRNA gene predicted gene, 41707
Gm41708 18 39906454 to 39929433 22979 - lncRNA gene predicted gene, 41708
Yipf5 18 40204865 to 40219399 14534 - protein coding gene Yip1 domain family, member 5
Cpgi9985 18 40218867 to 40219700 833 CpG island CpG island 9985
Tssr153102 18 40219324 to 40219369 45 - TSS region transcription start site region 153102
Gm31087 18 40242893 to 40246936 4043 - lncRNA gene predicted gene, 31087
Tssr150842 18 40256289 to 40256309 20 + TSS region transcription start site region 150842
Cpgi9986 18 40256702 to 40257129 427 CpG island CpG island 9986
Tssr150843 18 40256870 to 40256882 12 + TSS region transcription start site region 150843
Tssr150844 18 40256947 to 40256951 4 + TSS region transcription start site region 150844
Tssr150845 18 40256960 to 40257018 58 + TSS region transcription start site region 150845
2900055J20Rik 18 40256962 to 40257684 722 + unclassified gene RIKEN cDNA 2900055J20 gene
Tssr150846 18 40257031 to 40257042 11 + TSS region transcription start site region 150846
Kctd16 18 40258361 to 40531168 272807 + protein coding gene potassium channel tetramerisation domain containing 16
Tssr150847 18 40265807 to 40265814 7 + TSS region transcription start site region 150847
Tssr150848 18 40270540 to 40270549 9 + TSS region transcription start site region 150848
Tssr150849 18 40271674 to 40271677 3 + TSS region transcription start site region 150849
Tssr150850 18 40306068 to 40306080 12 + TSS region transcription start site region 150850
Tssr150851 18 40306235 to 40306248 13 + TSS region transcription start site region 150851
Tssr150852 18 40308205 to 40308229 24 + TSS region transcription start site region 150852
Tssr150853 18 40332478 to 40332483 5 + TSS region transcription start site region 150853
Tssr150854 18 40333235 to 40333239 4 + TSS region transcription start site region 150854
D18Mit227 18 40427082 to 40427203 121 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 227
Tssr150855 18 40512986 to 40513003 17 + TSS region transcription start site region 150855
Tssr150856 18 40513024 to 40513027 3 + TSS region transcription start site region 150856
Tssr150857 18 40523096 to 40523107 11 + TSS region transcription start site region 150857
Tssr150858 18 40530749 to 40530770 21 + TSS region transcription start site region 150858
C030017B01Rik 18 40539785 to 40543017 3232 unclassified gene RIKEN cDNA C030017B01 gene
Tssr150859 18 40541397 to 40541408 11 + TSS region transcription start site region 150859
Tssr150860 18 40721507 to 40721516 9 + TSS region transcription start site region 150860
Gm31205 18 40721525 to 40778105 56580 + lncRNA gene predicted gene, 31205
Rps19-ps13 18 40726269 to 40726709 440 + pseudogene ribosomal protein S19, pseudogene 13
Gm41710 18 40780069 to 40811782 31713 + lncRNA gene predicted gene, 41710
Tssr150861 18 40792714 to 40792716 2 + TSS region transcription start site region 150861
Gm22515 18 40801161 to 40801465 304 - unclassified non-coding RNA gene predicted gene, 22515