Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:39420540-41120549

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nr3c1 18 39410545 to 39491301 80756 - protein coding gene nuclear receptor subfamily 3, group C, member 1
Tssr153072 18 39466084 to 39466096 12 - TSS region transcription start site region 153072
Sluc41c 18 39486861 to 39487074 213 QTL susceptibility to lung cancer 41c
Obsty4 18 39486861 to 84620653 45133792 QTL obesity 4
Sluc41a 18 39486861 to 39487074 213 QTL susceptibility to lung cancer 41a
Sluc41b 18 39486861 to 39487074 213 QTL susceptibility to lung cancer 41b
Adip8 18 39486861 to 39487074 213 QTL adiposity 8
Sluc14 18 39486861 to 39487074 213 QTL susceptibility to lung cancer 14
D18Mit17 18 39486861 to 39487074 213 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 17
Tssr153073 18 39486999 to 39487011 12 - TSS region transcription start site region 153073
Tssr153074 18 39487026 to 39487045 19 - TSS region transcription start site region 153074
Tssr153075 18 39487063 to 39487094 31 - TSS region transcription start site region 153075
Tssr153076 18 39487096 to 39487119 23 - TSS region transcription start site region 153076
Tssr153077 18 39487777 to 39487780 3 - TSS region transcription start site region 153077
Tssr153078 18 39488724 to 39488752 28 - TSS region transcription start site region 153078
Cpgi9983 18 39488861 to 39491922 3061 CpG island CpG island 9983
Tssr153079 18 39489157 to 39489164 7 - TSS region transcription start site region 153079
Tssr153080 18 39489242 to 39489297 55 - TSS region transcription start site region 153080
Tssr153081 18 39489520 to 39489542 22 - TSS region transcription start site region 153081
Tssr153082 18 39489776 to 39489868 92 - TSS region transcription start site region 153082
Tssr153083 18 39489880 to 39489915 35 - TSS region transcription start site region 153083
Tssr153084 18 39490411 to 39490424 13 - TSS region transcription start site region 153084
Tssr153085 18 39490437 to 39490458 21 - TSS region transcription start site region 153085
Tssr153086 18 39490649 to 39490717 68 - TSS region transcription start site region 153086
Tssr153087 18 39490887 to 39490910 23 - TSS region transcription start site region 153087
Tssr153088 18 39491553 to 39491563 10 - TSS region transcription start site region 153088
Tssr153089 18 39496585 to 39496600 15 - TSS region transcription start site region 153089
Tssr150833 18 39496733 to 39496744 11 + TSS region transcription start site region 150833
Tssr150834 18 39496749 to 39496763 14 + TSS region transcription start site region 150834
Tssr153090 18 39514150 to 39514165 15 - TSS region transcription start site region 153090
Tssr153091 18 39519189 to 39519205 16 - TSS region transcription start site region 153091
Tssr153092 18 39519214 to 39519240 26 - TSS region transcription start site region 153092
Tssr153093 18 39519253 to 39519262 9 - TSS region transcription start site region 153093
Tssr153094 18 39519265 to 39519274 9 - TSS region transcription start site region 153094
Tssr153095 18 39519282 to 39519303 21 - TSS region transcription start site region 153095
Tssr153096 18 39519324 to 39519333 9 - TSS region transcription start site region 153096
Tssr153097 18 39519381 to 39519395 14 - TSS region transcription start site region 153097
Tssr153098 18 39519415 to 39519425 10 - TSS region transcription start site region 153098
Tssr153099 18 39519601 to 39519614 13 - TSS region transcription start site region 153099
Tssr150835 18 39519812 to 39519847 35 + TSS region transcription start site region 150835
Tssr150836 18 39539339 to 39539360 21 + TSS region transcription start site region 150836
Gm30909 18 39539369 to 39556103 16734 + lncRNA gene predicted gene, 30909
Gm30961 18 39636305 to 39656217 19912 + lncRNA gene predicted gene, 30961
D18Mit201 18 39646486 to 39646600 114 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 201
Tssr153100 18 39661208 to 39661214 6 - TSS region transcription start site region 153100
D18Mit89 18 39677426 to 39677568 142 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 89
Tssr5294 18 39701518 to 39701537 19 + TSS region transcription start site region 5294
Tssr153101 18 39734957 to 39734963 6 - TSS region transcription start site region 153101
Cpgi9984 18 39773426 to 39773955 529 CpG island CpG island 9984
Pabpc2 18 39773497 to 39776082 2585 + protein coding gene poly(A) binding protein, cytoplasmic 2
Tssr150837 18 39773505 to 39773576 71 + TSS region transcription start site region 150837
Tssr150838 18 39773578 to 39773594 16 + TSS region transcription start site region 150838
Tssr150839 18 39773600 to 39773605 5 + TSS region transcription start site region 150839
Tssr150840 18 39774833 to 39774870 37 + TSS region transcription start site region 150840
Tssr150841 18 39791921 to 39791925 4 + TSS region transcription start site region 150841
Gm41707 18 39804830 to 39871031 66201 + lncRNA gene predicted gene, 41707
Gm41708 18 39906454 to 39929433 22979 - lncRNA gene predicted gene, 41708
Yipf5 18 40204865 to 40219399 14534 - protein coding gene Yip1 domain family, member 5
Cpgi9985 18 40218867 to 40219700 833 CpG island CpG island 9985
Tssr153102 18 40219324 to 40219369 45 - TSS region transcription start site region 153102
Gm31087 18 40242893 to 40246936 4043 - lncRNA gene predicted gene, 31087
Tssr150842 18 40256289 to 40256309 20 + TSS region transcription start site region 150842
Cpgi9986 18 40256702 to 40257129 427 CpG island CpG island 9986
Tssr150843 18 40256870 to 40256882 12 + TSS region transcription start site region 150843
Tssr150844 18 40256947 to 40256951 4 + TSS region transcription start site region 150844
Tssr150845 18 40256960 to 40257018 58 + TSS region transcription start site region 150845
2900055J20Rik 18 40256962 to 40257684 722 + unclassified gene RIKEN cDNA 2900055J20 gene
Tssr150846 18 40257031 to 40257042 11 + TSS region transcription start site region 150846
Kctd16 18 40258361 to 40531168 272807 + protein coding gene potassium channel tetramerisation domain containing 16
Tssr150847 18 40265807 to 40265814 7 + TSS region transcription start site region 150847
Tssr150848 18 40270540 to 40270549 9 + TSS region transcription start site region 150848
Tssr150849 18 40271674 to 40271677 3 + TSS region transcription start site region 150849
Tssr150850 18 40306068 to 40306080 12 + TSS region transcription start site region 150850
Tssr150851 18 40306235 to 40306248 13 + TSS region transcription start site region 150851
Tssr150852 18 40308205 to 40308229 24 + TSS region transcription start site region 150852
Tssr150853 18 40332478 to 40332483 5 + TSS region transcription start site region 150853
Tssr150854 18 40333235 to 40333239 4 + TSS region transcription start site region 150854
D18Mit227 18 40427082 to 40427203 121 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 227
Tssr150855 18 40512986 to 40513003 17 + TSS region transcription start site region 150855
Tssr150856 18 40513024 to 40513027 3 + TSS region transcription start site region 150856
Tssr150857 18 40523096 to 40523107 11 + TSS region transcription start site region 150857
Tssr150858 18 40530749 to 40530770 21 + TSS region transcription start site region 150858
C030017B01Rik 18 40539785 to 40543017 3232 unclassified gene RIKEN cDNA C030017B01 gene
Tssr150859 18 40541397 to 40541408 11 + TSS region transcription start site region 150859
Tssr150860 18 40721507 to 40721516 9 + TSS region transcription start site region 150860
Gm31205 18 40721525 to 40778105 56580 + lncRNA gene predicted gene, 31205
Rps19-ps13 18 40726269 to 40726709 440 + pseudogene ribosomal protein S19, pseudogene 13
Gm41710 18 40780069 to 40811782 31713 + lncRNA gene predicted gene, 41710
Tssr150861 18 40792714 to 40792716 2 + TSS region transcription start site region 150861
Gm22515 18 40801161 to 40801465 304 - unclassified non-coding RNA gene predicted gene, 22515
Tssr153103 18 40923767 to 40923778 11 - TSS region transcription start site region 153103
Tssr153104 18 40923805 to 40923818 13 - TSS region transcription start site region 153104
Tssr153105 18 40923843 to 40923864 21 - TSS region transcription start site region 153105
Gm22483 18 40963279 to 40963552 273 + unclassified non-coding RNA gene predicted gene, 22483
Moen1 18 40982507 to 40982677 170 QTL modifier of engrailed QTL 1
D18Mit177 18 40982507 to 40982677 170 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 177