Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:38426496-39117347

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ndfip1 18 38418975 to 38464399 45424 + protein coding gene Nedd4 family interacting protein 1
Tssr150801 18 38428761 to 38428762 1 + TSS region transcription start site region 150801
Tssr150802 18 38457768 to 38457772 4 + TSS region transcription start site region 150802
D18Mit71 18 38459363 to 38459474 111 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 71
Tssr5291 18 38464593 to 38464607 14 + TSS region transcription start site region 5291
Gm41704 18 38482099 to 38488778 6679 + lncRNA gene predicted gene, 41704
Cpgi9977 18 38483368 to 38483822 454 CpG island CpG island 9977
D18Mit135 18 38524548 to 38524677 129 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 135
Tssr150803 18 38542878 to 38542906 28 + TSS region transcription start site region 150803
Cpgi9978 18 38574315 to 38574503 188 CpG island CpG island 9978
Gm19100 18 38582858 to 38583455 597 + pseudogene predicted gene, 19100
Tssr153043 18 38585007 to 38585008 1 - TSS region transcription start site region 153043
Spry4 18 38586268 to 38601268 15000 - protein coding gene sprouty RTK signaling antagonist 4
Gm27369 18 38594158 to 38594228 70 + unclassified non-coding RNA gene predicted gene, 27369
Gm27804 18 38594365 to 38594483 118 + unclassified non-coding RNA gene predicted gene, 27804
Tssr153044 18 38598973 to 38598976 3 - TSS region transcription start site region 153044
Cpgi9979 18 38600222 to 38601873 1651 CpG island CpG island 9979
Tssr153045 18 38601336 to 38601355 19 - TSS region transcription start site region 153045
Tssr150804 18 38601498 to 38601525 27 + TSS region transcription start site region 150804
Tssr150805 18 38601605 to 38601619 14 + TSS region transcription start site region 150805
Tssr150806 18 38602239 to 38602260 21 + TSS region transcription start site region 150806
Tssr153046 18 38603093 to 38603113 20 - TSS region transcription start site region 153046
Arhgap26 18 38617646 to 39376285 758639 + protein coding gene Rho GTPase activating protein 26
Cpgi9980 18 38631452 to 38632235 783 CpG island CpG island 9980
Tssr153047 18 38631537 to 38631548 11 - TSS region transcription start site region 153047
Tssr153048 18 38631560 to 38631580 20 - TSS region transcription start site region 153048
Tssr153049 18 38631610 to 38631619 9 - TSS region transcription start site region 153049
Tssr150807 18 38631667 to 38631716 49 + TSS region transcription start site region 150807
Tssr150808 18 38632444 to 38632462 18 + TSS region transcription start site region 150808
Tssr153050 18 38634542 to 38634554 12 - TSS region transcription start site region 153050
Tssr153051 18 38635827 to 38635848 21 - TSS region transcription start site region 153051
Tssr153052 18 38635905 to 38635916 11 - TSS region transcription start site region 153052
Tssr150809 18 38637181 to 38637189 8 + TSS region transcription start site region 150809
Tssr153053 18 38642581 to 38642583 2 - TSS region transcription start site region 153053
D18Mit14 18 38669671 to 38669772 101 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 14
Tssr153054 18 38671746 to 38671748 2 - TSS region transcription start site region 153054
Tssr150810 18 38714315 to 38714334 19 + TSS region transcription start site region 150810
Tssr150811 18 38714360 to 38714384 24 + TSS region transcription start site region 150811
Gm19774 18 38714400 to 38714513 113 + pseudogene predicted gene, 19774
Tssr150812 18 38714514 to 38714533 19 + TSS region transcription start site region 150812
Gm15335 18 38717528 to 38718128 600 - pseudogene predicted gene 15335
Gm46642 18 38769590 to 38781337 11747 + lncRNA gene predicted gene, 46642
Gm8302 18 38771496 to 38772347 851 - pseudogene predicted gene 8302
Gm38447 18 38787164 to 38789045 1881 + lncRNA gene predicted gene, 38447
Fgf1 18 38838673 to 38929404 90731 - protein coding gene fibroblast growth factor 1
Tssr153055 18 38866702 to 38866748 46 - TSS region transcription start site region 153055
Tssr153056 18 38867007 to 38867016 9 - TSS region transcription start site region 153056
Tssr153057 18 38867058 to 38867074 16 - TSS region transcription start site region 153057
Tssr153058 18 38867081 to 38867092 11 - TSS region transcription start site region 153058
Tssr150813 18 38869580 to 38869590 10 + TSS region transcription start site region 150813
Tssr153059 18 38881427 to 38881455 28 - TSS region transcription start site region 153059
Tssr153060 18 38881512 to 38881519 7 - TSS region transcription start site region 153060
Gm5820 18 38892456 to 38981623 89167 + protein coding gene predicted gene 5820
Tssr153061 18 38918642 to 38918710 68 - TSS region transcription start site region 153061
Tssr153062 18 38929133 to 38929145 12 - TSS region transcription start site region 153062
Tssr153063 18 38929148 to 38929168 20 - TSS region transcription start site region 153063
Tssr153064 18 38929173 to 38929199 26 - TSS region transcription start site region 153064
Tssr153065 18 38929378 to 38929396 18 - TSS region transcription start site region 153065
Tssr153066 18 38929401 to 38929410 9 - TSS region transcription start site region 153066
Tssr153067 18 38929462 to 38929480 18 - TSS region transcription start site region 153067
Tssr5292 18 38961375 to 38961378 3 + TSS region transcription start site region 5292
Cpgi9981 18 38992579 to 38994338 1759 CpG island CpG island 9981
Tssr150814 18 38993093 to 38993107 14 + TSS region transcription start site region 150814
Tssr150815 18 38993126 to 38993186 60 + TSS region transcription start site region 150815
Tssr150816 18 38993193 to 38993205 12 + TSS region transcription start site region 150816
Tssr150817 18 38993256 to 38993263 7 + TSS region transcription start site region 150817
Tssr150818 18 38993273 to 38993286 13 + TSS region transcription start site region 150818
Gm15334 18 38993635 to 38994192 557 - antisense lncRNA gene predicted gene 15334
Gm41705 18 38996913 to 39012464 15551 + lncRNA gene predicted gene, 41705
D18Mit193 18 39016654 to 39016771 117 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 193
Tssr150819 18 39024142 to 39024181 39 + TSS region transcription start site region 150819
Tssr5293 18 39026683 to 39026686 3 + TSS region transcription start site region 5293
Tssr150820 18 39031543 to 39031544 1 + TSS region transcription start site region 150820
Tssr150821 18 39072539 to 39072542 3 + TSS region transcription start site region 150821