Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:38204490-38634495

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97 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pcdh1 18 38189454 to 38212048 22594 - protein coding gene protocadherin 1
Cpgi9969 18 38209604 to 38213013 3409 CpG island CpG island 9969
Tssr153021 18 38209642 to 38209670 28 - TSS region transcription start site region 153021
Tssr153022 18 38209676 to 38209728 52 - TSS region transcription start site region 153022
Tssr153023 18 38209733 to 38209747 14 - TSS region transcription start site region 153023
Tssr153024 18 38209767 to 38209786 19 - TSS region transcription start site region 153024
Tssr153025 18 38211957 to 38211995 38 - TSS region transcription start site region 153025
2010320O07Rik 18 38212112 to 38229163 17051 + lncRNA gene RIKEN cDNA 2010320O07 gene
Tssr150777 18 38228548 to 38228561 13 + TSS region transcription start site region 150777
1700086O06Rik 18 38238405 to 38250565 12160 - lincRNA gene RIKEN cDNA 1700086O06 gene
Cpgi9970 18 38239125 to 38239975 850 CpG island CpG island 9970
Tssr150778 18 38244789 to 38244798 9 + TSS region transcription start site region 150778
Gm10268 18 38244828 to 38245382 554 + pseudogene predicted gene 10268
Cpgi9971 18 38249945 to 38250617 672 CpG island CpG island 9971
Tssr153026 18 38250127 to 38250140 13 - TSS region transcription start site region 153026
Tssr153027 18 38250157 to 38250212 55 - TSS region transcription start site region 153027
Tssr150779 18 38250240 to 38250287 47 + TSS region transcription start site region 150779
Dele1 18 38250249 to 38262629 12380 + protein coding gene DAP3 binding cell death enhancer 1
Tssr150780 18 38250294 to 38250305 11 + TSS region transcription start site region 150780
Tssr150781 18 38250306 to 38250317 11 + TSS region transcription start site region 150781
Tssr153028 18 38250479 to 38250514 35 - TSS region transcription start site region 153028
Tssr153029 18 38250558 to 38250607 49 - TSS region transcription start site region 153029
Tssr150782 18 38251080 to 38251092 12 + TSS region transcription start site region 150782
Tssr150783 18 38262006 to 38262033 27 + TSS region transcription start site region 150783
Pcdh12 18 38267092 to 38284401 17309 - protein coding gene protocadherin 12
Cpgi9972 18 38268906 to 38269128 222 CpG island CpG island 9972
Tssr153030 18 38284322 to 38284328 6 - TSS region transcription start site region 153030
Tssr153031 18 38284339 to 38284346 7 - TSS region transcription start site region 153031
Tssr153032 18 38284391 to 38284408 17 - TSS region transcription start site region 153032
Cpgi9973 18 38296417 to 38297491 1074 CpG island CpG island 9973
Rnf14 18 38296635 to 38317847 21212 + protein coding gene ring finger protein 14
Tssr150784 18 38296640 to 38296719 79 + TSS region transcription start site region 150784
Tssr150785 18 38296724 to 38296734 10 + TSS region transcription start site region 150785
Tssr150786 18 38296739 to 38296750 11 + TSS region transcription start site region 150786
Tssr150787 18 38296808 to 38296819 11 + TSS region transcription start site region 150787
Tssr150788 18 38296826 to 38296837 11 + TSS region transcription start site region 150788
Tssr150789 18 38296961 to 38296987 26 + TSS region transcription start site region 150789
Tssr153033 18 38297040 to 38297055 15 - TSS region transcription start site region 153033
Tssr150790 18 38297210 to 38297231 21 + TSS region transcription start site region 150790
Tssr150791 18 38297247 to 38297266 19 + TSS region transcription start site region 150791
Tssr150792 18 38297486 to 38297507 21 + TSS region transcription start site region 150792
Gm23205 18 38297939 to 38298041 102 + snRNA gene predicted gene, 23205
1700074L02Rik 18 38299072 to 38299470 398 unclassified gene RIKEN cDNA 1700074L02 gene
Gnpda1 18 38327558 to 38339003 11445 - protein coding gene glucosamine-6-phosphate deaminase 1
Gm41702 18 38338229 to 38339710 1481 + lncRNA gene predicted gene, 41702
Cpgi9974 18 38338312 to 38339216 904 CpG island CpG island 9974
Tssr153034 18 38338934 to 38338985 51 - TSS region transcription start site region 153034
Tssr153035 18 38338991 to 38338994 3 - TSS region transcription start site region 153035
Tssr153036 18 38338997 to 38339007 10 - TSS region transcription start site region 153036
Tssr150793 18 38339071 to 38339101 30 + TSS region transcription start site region 150793
Tssr153037 18 38349939 to 38349946 7 - TSS region transcription start site region 153037
Tssr153038 18 38350100 to 38350133 33 - TSS region transcription start site region 153038
Gm24690 18 38356578 to 38356674 96 + rRNA gene predicted gene, 24690
Gm4949 18 38359444 to 38360538 1094 - pseudogene predicted gene 4949
Gm41703 18 38361361 to 38367990 6629 - lncRNA gene predicted gene, 41703
Cpgi9975 18 38367326 to 38367521 195 CpG island CpG island 9975
Tssr153039 18 38375547 to 38375557 10 - TSS region transcription start site region 153039
Tssr150794 18 38379339 to 38379350 11 + TSS region transcription start site region 150794
Tssr153040 18 38381173 to 38381176 3 - TSS region transcription start site region 153040
Tssr153041 18 38381181 to 38381191 10 - TSS region transcription start site region 153041
Tssr150795 18 38406457 to 38406467 10 + TSS region transcription start site region 150795
Cpgi9976 18 38418585 to 38419687 1102 CpG island CpG island 9976
Tssr150796 18 38418909 to 38418916 7 + TSS region transcription start site region 150796
Tssr150797 18 38418927 to 38418938 11 + TSS region transcription start site region 150797
Tssr150798 18 38418946 to 38418985 39 + TSS region transcription start site region 150798
Ndfip1 18 38418975 to 38464399 45424 + protein coding gene Nedd4 family interacting protein 1
Tssr150799 18 38419066 to 38419093 27 + TSS region transcription start site region 150799
Tssr153042 18 38419354 to 38419365 11 - TSS region transcription start site region 153042
Tssr150800 18 38419490 to 38419495 5 + TSS region transcription start site region 150800
Tssr150801 18 38428761 to 38428762 1 + TSS region transcription start site region 150801
Tssr150802 18 38457768 to 38457772 4 + TSS region transcription start site region 150802
D18Mit71 18 38459363 to 38459474 111 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 71
Tssr5291 18 38464593 to 38464607 14 + TSS region transcription start site region 5291
Gm41704 18 38482099 to 38488778 6679 + lncRNA gene predicted gene, 41704
Cpgi9977 18 38483368 to 38483822 454 CpG island CpG island 9977
D18Mit135 18 38524548 to 38524677 129 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 135
Tssr150803 18 38542878 to 38542906 28 + TSS region transcription start site region 150803
Cpgi9978 18 38574315 to 38574503 188 CpG island CpG island 9978
Gm19100 18 38582858 to 38583455 597 + pseudogene predicted gene, 19100
Tssr153043 18 38585007 to 38585008 1 - TSS region transcription start site region 153043
Spry4 18 38586268 to 38601268 15000 - protein coding gene sprouty RTK signaling antagonist 4
Gm27369 18 38594158 to 38594228 70 + unclassified non-coding RNA gene predicted gene, 27369
Gm27804 18 38594365 to 38594483 118 + unclassified non-coding RNA gene predicted gene, 27804
Tssr153044 18 38598973 to 38598976 3 - TSS region transcription start site region 153044
Cpgi9979 18 38600222 to 38601873 1651 CpG island CpG island 9979
Tssr153045 18 38601336 to 38601355 19 - TSS region transcription start site region 153045
Tssr150804 18 38601498 to 38601525 27 + TSS region transcription start site region 150804
Tssr150805 18 38601605 to 38601619 14 + TSS region transcription start site region 150805
Tssr150806 18 38602239 to 38602260 21 + TSS region transcription start site region 150806
Tssr153046 18 38603093 to 38603113 20 - TSS region transcription start site region 153046
Arhgap26 18 38617646 to 39376285 758639 + protein coding gene Rho GTPase activating protein 26
Cpgi9980 18 38631452 to 38632235 783 CpG island CpG island 9980
Tssr153047 18 38631537 to 38631548 11 - TSS region transcription start site region 153047
Tssr153048 18 38631560 to 38631580 20 - TSS region transcription start site region 153048
Tssr153049 18 38631610 to 38631619 9 - TSS region transcription start site region 153049
Tssr150807 18 38631667 to 38631716 49 + TSS region transcription start site region 150807
Tssr150808 18 38632444 to 38632462 18 + TSS region transcription start site region 150808