Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:38203229-38474710

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pcdh1 18 38189454 to 38212048 22594 - protein coding gene protocadherin 1
Tssr153017 18 38203784 to 38203795 11 - TSS region transcription start site region 153017
Tssr153018 18 38203798 to 38203828 30 - TSS region transcription start site region 153018
Tssr153019 18 38203833 to 38203836 3 - TSS region transcription start site region 153019
Tssr153020 18 38203842 to 38203851 9 - TSS region transcription start site region 153020
Cpgi9969 18 38209604 to 38213013 3409 CpG island CpG island 9969
Tssr153021 18 38209642 to 38209670 28 - TSS region transcription start site region 153021
Tssr153022 18 38209676 to 38209728 52 - TSS region transcription start site region 153022
Tssr153023 18 38209733 to 38209747 14 - TSS region transcription start site region 153023
Tssr153024 18 38209767 to 38209786 19 - TSS region transcription start site region 153024
Tssr153025 18 38211957 to 38211995 38 - TSS region transcription start site region 153025
2010320O07Rik 18 38212112 to 38229163 17051 + lncRNA gene RIKEN cDNA 2010320O07 gene
Tssr150777 18 38228548 to 38228561 13 + TSS region transcription start site region 150777
1700086O06Rik 18 38238405 to 38250565 12160 - lincRNA gene RIKEN cDNA 1700086O06 gene
Cpgi9970 18 38239125 to 38239975 850 CpG island CpG island 9970
Tssr150778 18 38244789 to 38244798 9 + TSS region transcription start site region 150778
Gm10268 18 38244828 to 38245382 554 + pseudogene predicted gene 10268
Cpgi9971 18 38249945 to 38250617 672 CpG island CpG island 9971
Tssr153026 18 38250127 to 38250140 13 - TSS region transcription start site region 153026
Tssr153027 18 38250157 to 38250212 55 - TSS region transcription start site region 153027
Tssr150779 18 38250240 to 38250287 47 + TSS region transcription start site region 150779
Dele1 18 38250249 to 38262629 12380 + protein coding gene DAP3 binding cell death enhancer 1
Tssr150780 18 38250294 to 38250305 11 + TSS region transcription start site region 150780
Tssr150781 18 38250306 to 38250317 11 + TSS region transcription start site region 150781
Tssr153028 18 38250479 to 38250514 35 - TSS region transcription start site region 153028
Tssr153029 18 38250558 to 38250607 49 - TSS region transcription start site region 153029
Tssr150782 18 38251080 to 38251092 12 + TSS region transcription start site region 150782
Tssr150783 18 38262006 to 38262033 27 + TSS region transcription start site region 150783
Pcdh12 18 38267092 to 38284401 17309 - protein coding gene protocadherin 12
Cpgi9972 18 38268906 to 38269128 222 CpG island CpG island 9972
Tssr153030 18 38284322 to 38284328 6 - TSS region transcription start site region 153030
Tssr153031 18 38284339 to 38284346 7 - TSS region transcription start site region 153031
Tssr153032 18 38284391 to 38284408 17 - TSS region transcription start site region 153032
Cpgi9973 18 38296417 to 38297491 1074 CpG island CpG island 9973
Rnf14 18 38296635 to 38317847 21212 + protein coding gene ring finger protein 14
Tssr150784 18 38296640 to 38296719 79 + TSS region transcription start site region 150784
Tssr150785 18 38296724 to 38296734 10 + TSS region transcription start site region 150785
Tssr150786 18 38296739 to 38296750 11 + TSS region transcription start site region 150786
Tssr150787 18 38296808 to 38296819 11 + TSS region transcription start site region 150787
Tssr150788 18 38296826 to 38296837 11 + TSS region transcription start site region 150788
Tssr150789 18 38296961 to 38296987 26 + TSS region transcription start site region 150789
Tssr153033 18 38297040 to 38297055 15 - TSS region transcription start site region 153033
Tssr150790 18 38297210 to 38297231 21 + TSS region transcription start site region 150790
Tssr150791 18 38297247 to 38297266 19 + TSS region transcription start site region 150791
Tssr150792 18 38297486 to 38297507 21 + TSS region transcription start site region 150792
Gm23205 18 38297939 to 38298041 102 + snRNA gene predicted gene, 23205
1700074L02Rik 18 38299072 to 38299470 398 unclassified gene RIKEN cDNA 1700074L02 gene
Gnpda1 18 38327558 to 38339003 11445 - protein coding gene glucosamine-6-phosphate deaminase 1
Gm41702 18 38338229 to 38339710 1481 + lncRNA gene predicted gene, 41702
Cpgi9974 18 38338312 to 38339216 904 CpG island CpG island 9974
Tssr153034 18 38338934 to 38338985 51 - TSS region transcription start site region 153034
Tssr153035 18 38338991 to 38338994 3 - TSS region transcription start site region 153035
Tssr153036 18 38338997 to 38339007 10 - TSS region transcription start site region 153036
Tssr150793 18 38339071 to 38339101 30 + TSS region transcription start site region 150793
Tssr153037 18 38349939 to 38349946 7 - TSS region transcription start site region 153037
Tssr153038 18 38350100 to 38350133 33 - TSS region transcription start site region 153038
Gm24690 18 38356578 to 38356674 96 + rRNA gene predicted gene, 24690
Gm4949 18 38359444 to 38360538 1094 - pseudogene predicted gene 4949
Gm41703 18 38361361 to 38367990 6629 - lncRNA gene predicted gene, 41703
Cpgi9975 18 38367326 to 38367521 195 CpG island CpG island 9975
Tssr153039 18 38375547 to 38375557 10 - TSS region transcription start site region 153039
Tssr150794 18 38379339 to 38379350 11 + TSS region transcription start site region 150794
Tssr153040 18 38381173 to 38381176 3 - TSS region transcription start site region 153040
Tssr153041 18 38381181 to 38381191 10 - TSS region transcription start site region 153041
Tssr150795 18 38406457 to 38406467 10 + TSS region transcription start site region 150795
Cpgi9976 18 38418585 to 38419687 1102 CpG island CpG island 9976
Tssr150796 18 38418909 to 38418916 7 + TSS region transcription start site region 150796
Tssr150797 18 38418927 to 38418938 11 + TSS region transcription start site region 150797
Tssr150798 18 38418946 to 38418985 39 + TSS region transcription start site region 150798
Ndfip1 18 38418975 to 38464399 45424 + protein coding gene Nedd4 family interacting protein 1
Tssr150799 18 38419066 to 38419093 27 + TSS region transcription start site region 150799
Tssr153042 18 38419354 to 38419365 11 - TSS region transcription start site region 153042
Tssr150800 18 38419490 to 38419495 5 + TSS region transcription start site region 150800
Tssr150801 18 38428761 to 38428762 1 + TSS region transcription start site region 150801
Tssr150802 18 38457768 to 38457772 4 + TSS region transcription start site region 150802
D18Mit71 18 38459363 to 38459474 111 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 71
Tssr5291 18 38464593 to 38464607 14 + TSS region transcription start site region 5291