Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:37896292-38296540

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Diaph1 18 37843601 to 37935476 91875 - protein coding gene diaphanous related formin 1
Tssr153000 18 37923382 to 37923386 4 - TSS region transcription start site region 153000
Cpgi9957 18 37934829 to 37935789 960 CpG island CpG island 9957
Tssr153001 18 37935378 to 37935393 15 - TSS region transcription start site region 153001
Tssr153002 18 37935403 to 37935428 25 - TSS region transcription start site region 153002
Tssr153003 18 37935429 to 37935450 21 - TSS region transcription start site region 153003
Hdac3 18 37936971 to 37954988 18017 - protein coding gene histone deacetylase 3
Tssr153004 18 37945048 to 37945064 16 - TSS region transcription start site region 153004
Cpgi9958 18 37954787 to 37956373 1586 CpG island CpG island 9958
Tssr153005 18 37954936 to 37954952 16 - TSS region transcription start site region 153005
Tssr153006 18 37954958 to 37955002 44 - TSS region transcription start site region 153006
Tssr153007 18 37955009 to 37955025 16 - TSS region transcription start site region 153007
Tssr150768 18 37955065 to 37955122 57 + TSS region transcription start site region 150768
Rell2 18 37955084 to 37959179 4095 + protein coding gene RELT-like 2
Tssr150769 18 37955126 to 37955135 9 + TSS region transcription start site region 150769
Tssr150770 18 37955528 to 37955537 9 + TSS region transcription start site region 150770
Tssr150771 18 37955544 to 37955623 79 + TSS region transcription start site region 150771
Tssr150772 18 37955635 to 37955645 10 + TSS region transcription start site region 150772
Tssr150773 18 37955648 to 37955672 24 + TSS region transcription start site region 150773
Tssr150774 18 37955685 to 37955694 9 + TSS region transcription start site region 150774
Fchsd1 18 37957431 to 37969774 12343 - protein coding gene FCH and double SH3 domains 1
Cpgi9959 18 37969404 to 37970198 794 CpG island CpG island 9959
Tssr153008 18 37969742 to 37969782 40 - TSS region transcription start site region 153008
Tssr153009 18 37969970 to 37969981 11 - TSS region transcription start site region 153009
Arap3 18 37972624 to 37997574 24950 - protein coding gene ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3
Mir6981 18 37974503 to 37974617 114 - miRNA gene microRNA 6981
Cpgi9960 18 37985265 to 37985477 212 CpG island CpG island 9960
Tssr153010 18 37987170 to 37987174 4 - TSS region transcription start site region 153010
Mir6980 18 37990887 to 37990945 58 - miRNA gene microRNA 6980
Tssr153011 18 37997528 to 37997540 12 - TSS region transcription start site region 153011
Tssr153012 18 37997543 to 37997569 26 - TSS region transcription start site region 153012
Tssr150775 18 37997673 to 37997706 33 + TSS region transcription start site region 150775
Cpgi9961 18 37998453 to 37998839 386 CpG island CpG island 9961
Tssr153013 18 37998714 to 37998771 57 - TSS region transcription start site region 153013
Tssr153014 18 37999517 to 37999540 23 - TSS region transcription start site region 153014
Gm30093 18 38025003 to 38104400 79397 + lncRNA gene predicted gene, 30093
Cpgi9962 18 38025110 to 38025779 669 CpG island CpG island 9962
Gm41701 18 38049789 to 38061485 11696 - lncRNA gene predicted gene, 41701
Hctq8 18 38084527 to 38084674 147 QTL hematocrit QTL 8
D18Mit94 18 38084527 to 38084674 147 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 94
Cpgi9963 18 38096292 to 38096540 248 CpG island CpG island 9963
Gm30188 18 38105757 to 38145025 39268 - lncRNA gene predicted gene, 30188
Cpgi9964 18 38144961 to 38145341 380 CpG island CpG island 9964
Gm30142 18 38146242 to 38147998 1756 + lncRNA gene predicted gene, 30142
Tssr153015 18 38150799 to 38150810 11 - TSS region transcription start site region 153015
Gm30259 18 38162664 to 38168039 5375 - lncRNA gene predicted gene, 30259
Gm38566 18 38168484 to 38173421 4937 - lncRNA gene predicted gene, 38566
Cpgi9965 18 38185132 to 38185549 417 CpG island CpG island 9965
Cpgi9966 18 38185608 to 38186244 636 CpG island CpG island 9966
Cpgi9967 18 38189429 to 38189930 501 CpG island CpG island 9967
Pcdh1 18 38189454 to 38212048 22594 - protein coding gene protocadherin 1
Tssr150776 18 38190793 to 38190804 11 + TSS region transcription start site region 150776
Tssr153016 18 38192121 to 38192128 7 - TSS region transcription start site region 153016
Cpgi9968 18 38197802 to 38198103 301 CpG island CpG island 9968
Tssr153017 18 38203784 to 38203795 11 - TSS region transcription start site region 153017
Tssr153018 18 38203798 to 38203828 30 - TSS region transcription start site region 153018
Tssr153019 18 38203833 to 38203836 3 - TSS region transcription start site region 153019
Tssr153020 18 38203842 to 38203851 9 - TSS region transcription start site region 153020
Cpgi9969 18 38209604 to 38213013 3409 CpG island CpG island 9969
Tssr153021 18 38209642 to 38209670 28 - TSS region transcription start site region 153021
Tssr153022 18 38209676 to 38209728 52 - TSS region transcription start site region 153022
Tssr153023 18 38209733 to 38209747 14 - TSS region transcription start site region 153023
Tssr153024 18 38209767 to 38209786 19 - TSS region transcription start site region 153024
Tssr153025 18 38211957 to 38211995 38 - TSS region transcription start site region 153025
2010320O07Rik 18 38212112 to 38229163 17051 + lncRNA gene RIKEN cDNA 2010320O07 gene
Tssr150777 18 38228548 to 38228561 13 + TSS region transcription start site region 150777
1700086O06Rik 18 38238405 to 38250565 12160 - lincRNA gene RIKEN cDNA 1700086O06 gene
Cpgi9970 18 38239125 to 38239975 850 CpG island CpG island 9970
Tssr150778 18 38244789 to 38244798 9 + TSS region transcription start site region 150778
Gm10268 18 38244828 to 38245382 554 + pseudogene predicted gene 10268
Cpgi9971 18 38249945 to 38250617 672 CpG island CpG island 9971
Tssr153026 18 38250127 to 38250140 13 - TSS region transcription start site region 153026
Tssr153027 18 38250157 to 38250212 55 - TSS region transcription start site region 153027
Tssr150779 18 38250240 to 38250287 47 + TSS region transcription start site region 150779
Dele1 18 38250249 to 38262629 12380 + protein coding gene DAP3 binding cell death enhancer 1
Tssr150780 18 38250294 to 38250305 11 + TSS region transcription start site region 150780
Tssr150781 18 38250306 to 38250317 11 + TSS region transcription start site region 150781
Tssr153028 18 38250479 to 38250514 35 - TSS region transcription start site region 153028
Tssr153029 18 38250558 to 38250607 49 - TSS region transcription start site region 153029
Tssr150782 18 38251080 to 38251092 12 + TSS region transcription start site region 150782
Tssr150783 18 38262006 to 38262033 27 + TSS region transcription start site region 150783
Pcdh12 18 38267092 to 38284401 17309 - protein coding gene protocadherin 12
Cpgi9972 18 38268906 to 38269128 222 CpG island CpG island 9972
Tssr153030 18 38284322 to 38284328 6 - TSS region transcription start site region 153030
Tssr153031 18 38284339 to 38284346 7 - TSS region transcription start site region 153031
Tssr153032 18 38284391 to 38284408 17 - TSS region transcription start site region 153032
Cpgi9973 18 38296417 to 38297491 1074 CpG island CpG island 9973