Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:37840887-38140945

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm38666 18 36967631 to 37841873 874242 + protein coding gene predicted gene, 38666
Gm38667 18 36973802 to 37841873 868071 + protein coding gene predicted gene, 38667
Pcdhga1 18 37661945 to 37841870 179925 + protein coding gene protocadherin gamma subfamily A, 1
Pcdhga2 18 37669105 to 37841870 172765 + protein coding gene protocadherin gamma subfamily A, 2
Pcdhga3 18 37674335 to 37841873 167538 + protein coding gene protocadherin gamma subfamily A, 3
Pcdhgb1 18 37680458 to 37841870 161412 + protein coding gene protocadherin gamma subfamily B, 1
Pcdhga4 18 37685400 to 37841870 156470 + protein coding gene protocadherin gamma subfamily A, 4
Pcdhgb2 18 37689859 to 37841872 152013 + protein coding gene protocadherin gamma subfamily B, 2
Pcdhga5 18 37694501 to 37841870 147369 + protein coding gene protocadherin gamma subfamily A, 5
Pcdhga6 18 37707229 to 37841870 134641 + protein coding gene protocadherin gamma subfamily A, 6
Pcdhga7 18 37714834 to 37841873 127039 + protein coding gene protocadherin gamma subfamily A, 7
Pcdhgb4 18 37720554 to 37841870 121316 + protein coding gene protocadherin gamma subfamily B, 4
Pcdhga8 18 37725706 to 37841873 116167 + protein coding gene protocadherin gamma subfamily A, 8
Pcdhgb5 18 37731154 to 37841870 110716 + protein coding gene protocadherin gamma subfamily B, 5
Pcdhga9 18 37736936 to 37841863 104927 + protein coding gene protocadherin gamma subfamily A, 9
Pcdhgb6 18 37742094 to 37841873 99779 + protein coding gene protocadherin gamma subfamily B, 6
Pcdhga10 18 37747188 to 37841870 94682 + protein coding gene protocadherin gamma subfamily A, 10
Pcdhgb7 18 37751779 to 37841870 90091 + protein coding gene protocadherin gamma subfamily B, 7
Pcdhga11 18 37755773 to 37841873 86100 + protein coding gene protocadherin gamma subfamily A, 11
Pcdhgb8 18 37761801 to 37841870 80069 + polymorphic pseudogene protocadherin gamma subfamily B, 8
Pcdhga12 18 37765580 to 37841873 76293 + protein coding gene protocadherin gamma subfamily A, 12
Pcdhgc3 18 37806410 to 37841873 35463 + protein coding gene protocadherin gamma subfamily C, 3
Pcdhgc4 18 37815079 to 37841873 26794 + protein coding gene protocadherin gamma subfamily C, 4
Pcdhgc5 18 37819546 to 37841873 22327 + protein coding gene protocadherin gamma subfamily C, 5
Cpgi9956 18 37841578 to 37841796 218 CpG island CpG island 9956
Diaph1 18 37843601 to 37935476 91875 - protein coding gene diaphanous related formin 1
Mir6979 18 37854605 to 37854660 55 - miRNA gene microRNA 6979
Tssr152992 18 37864511 to 37864517 6 - TSS region transcription start site region 152992
Tssr5290 18 37873254 to 37873255 1 + TSS region transcription start site region 5290
Tssr152993 18 37874347 to 37874380 33 - TSS region transcription start site region 152993
Tssr150766 18 37874547 to 37874550 3 + TSS region transcription start site region 150766
Tssr152994 18 37877760 to 37877772 12 - TSS region transcription start site region 152994
Tssr152995 18 37887954 to 37887956 2 - TSS region transcription start site region 152995
Tssr150767 18 37890899 to 37890923 24 + TSS region transcription start site region 150767
Tssr152996 18 37890983 to 37891000 17 - TSS region transcription start site region 152996
Tssr152997 18 37893373 to 37893411 38 - TSS region transcription start site region 152997
Tssr152998 18 37894201 to 37894214 13 - TSS region transcription start site region 152998
Tssr152999 18 37896141 to 37896155 14 - TSS region transcription start site region 152999
Tssr153000 18 37923382 to 37923386 4 - TSS region transcription start site region 153000
Cpgi9957 18 37934829 to 37935789 960 CpG island CpG island 9957
Tssr153001 18 37935378 to 37935393 15 - TSS region transcription start site region 153001
Tssr153002 18 37935403 to 37935428 25 - TSS region transcription start site region 153002
Tssr153003 18 37935429 to 37935450 21 - TSS region transcription start site region 153003
Hdac3 18 37936971 to 37954988 18017 - protein coding gene histone deacetylase 3
Tssr153004 18 37945048 to 37945064 16 - TSS region transcription start site region 153004
Cpgi9958 18 37954787 to 37956373 1586 CpG island CpG island 9958
Tssr153005 18 37954936 to 37954952 16 - TSS region transcription start site region 153005
Tssr153006 18 37954958 to 37955002 44 - TSS region transcription start site region 153006
Tssr153007 18 37955009 to 37955025 16 - TSS region transcription start site region 153007
Tssr150768 18 37955065 to 37955122 57 + TSS region transcription start site region 150768
Rell2 18 37955084 to 37959179 4095 + protein coding gene RELT-like 2
Tssr150769 18 37955126 to 37955135 9 + TSS region transcription start site region 150769
Tssr150770 18 37955528 to 37955537 9 + TSS region transcription start site region 150770
Tssr150771 18 37955544 to 37955623 79 + TSS region transcription start site region 150771
Tssr150772 18 37955635 to 37955645 10 + TSS region transcription start site region 150772
Tssr150773 18 37955648 to 37955672 24 + TSS region transcription start site region 150773
Tssr150774 18 37955685 to 37955694 9 + TSS region transcription start site region 150774
Fchsd1 18 37957431 to 37969774 12343 - protein coding gene FCH and double SH3 domains 1
Cpgi9959 18 37969404 to 37970198 794 CpG island CpG island 9959
Tssr153008 18 37969742 to 37969782 40 - TSS region transcription start site region 153008
Tssr153009 18 37969970 to 37969981 11 - TSS region transcription start site region 153009
Arap3 18 37972624 to 37997574 24950 - protein coding gene ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3
Mir6981 18 37974503 to 37974617 114 - miRNA gene microRNA 6981
Cpgi9960 18 37985265 to 37985477 212 CpG island CpG island 9960
Tssr153010 18 37987170 to 37987174 4 - TSS region transcription start site region 153010
Mir6980 18 37990887 to 37990945 58 - miRNA gene microRNA 6980
Tssr153011 18 37997528 to 37997540 12 - TSS region transcription start site region 153011
Tssr153012 18 37997543 to 37997569 26 - TSS region transcription start site region 153012
Tssr150775 18 37997673 to 37997706 33 + TSS region transcription start site region 150775
Cpgi9961 18 37998453 to 37998839 386 CpG island CpG island 9961
Tssr153013 18 37998714 to 37998771 57 - TSS region transcription start site region 153013
Tssr153014 18 37999517 to 37999540 23 - TSS region transcription start site region 153014
Gm30093 18 38025003 to 38104400 79397 + lncRNA gene predicted gene, 30093
Cpgi9962 18 38025110 to 38025779 669 CpG island CpG island 9962
Gm41701 18 38049789 to 38061485 11696 - lncRNA gene predicted gene, 41701
D18Mit94 18 38084527 to 38084674 147 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 94
Hctq8 18 38084527 to 38084674 147 QTL hematocrit QTL 8
Cpgi9963 18 38096292 to 38096540 248 CpG island CpG island 9963
Gm30188 18 38105757 to 38145025 39268 - lncRNA gene predicted gene, 30188